Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:04:31 (38723): wrapper (7.7.26015): starting
20:04:31 (38723): wrapper: running run_atlas (--nthreads 6)
[2025-10-11 20:04:31] Arguments: --nthreads 6
[2025-10-11 20:04:31] Threads: 6
[2025-10-11 20:04:31] Checking for CVMFS
[2025-10-11 20:04:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 20:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 20:04:34] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 20:04:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 20:04:34] 2.13.2.0 38923 0 30992 151592 4 1 16129624 81920000 0 130560 0 0 0.000 1291 3842 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://147.213.204.101:3128 1
[2025-10-11 20:04:34] CVMFS is ok
[2025-10-11 20:04:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:04:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:04:34] Further information can be found at the LHC@home message board.
[2025-10-11 20:04:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:04:34] Checking for apptainer binary...
[2025-10-11 20:04:34] which: no apptainer in (/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/var/lib/snapd/snap/bin)
[2025-10-11 20:04:34] apptainer is not installed, using version from CVMFS
[2025-10-11 20:04:34] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:04:35] monitor-atlas.iep
[2025-10-11 20:04:35] apptainer works
[2025-10-11 20:04:35] Set ATHENA_PROC_NUMBER=6
[2025-10-11 20:04:35] Set ATHENA_CORE_NUMBER=6
[2025-10-11 20:04:35] Starting ATLAS job with PandaID=6837828475
[2025-10-11 20:04:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 20:53:52]  *** The last 200 lines of the pilot log: ***
[2025-10-11 20:53:52]  mtime=0
[2025-10-11 20:53:52]  protocol_id=None
[2025-10-11 20:53:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 20:53:52]  replicas=None
[2025-10-11 20:53:52]  scope=mc23_13p6TeV
[2025-10-11 20:53:52]  status=None
[2025-10-11 20:53:52]  status_code=0
[2025-10-11 20:53:52]  storage_token=
[2025-10-11 20:53:52]  surl=/var/lib/boinc/slots/6/PanDA_Pilot-6837828475/log.46676269._045936.job.log.tgz.1
[2025-10-11 20:53:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/3e/log.46676269._045936.job.log.tgz.1
[2025-10-11 20:53:52]  workdir=None
[2025-10-11 20:53:52] ]
[2025-10-11 20:53:52] 2025-10-11 18:52:50,242 | INFO     | transferring file log.46676269._045936.job.log.tgz.1 from /var/lib/boinc/slots/6/PanDA_Pilot-6837828475/log.46676269._045936.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 20:53:52] 2025-10-11 18:52:50,242 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/6/PanDA_Pilot-6837828475/log.46676269._045936.job.log.tgz.1 /var/lib/boinc/slots/6/log.46676269._045936.job
[2025-10-11 20:53:52] 2025-10-11 18:52:50,248 | INFO     | adding to output.list: log.46676269._045936.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e0/3e/log.46676269._045936.job.log.tg
[2025-10-11 20:53:52] 2025-10-11 18:52:50,249 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 20:53:52] 2025-10-11 18:52:50,249 | INFO     | summary of transferred files:
[2025-10-11 20:53:52] 2025-10-11 18:52:50,249 | INFO     |  -- lfn=log.46676269._045936.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 20:53:52] 2025-10-11 18:52:50,249 | INFO     | stage-out finished correctly
[2025-10-11 20:53:52] 2025-10-11 18:52:50,279 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | job 6837828475 has state=finished
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | preparing for final server update for job 6837828475 in state='finished'
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | this job has now completed (state=finished)
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | log transfer has been attempted: DONE
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | job 6837828475 has finished - writing final server update
[2025-10-11 20:53:52] 2025-10-11 18:52:51,404 | INFO     | total number of processed events: 400 (read)
[2025-10-11 20:53:52] 2025-10-11 18:52:51,405 | INFO     | executing command: lscpu
[2025-10-11 20:53:52] 2025-10-11 18:52:51,412 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 20:53:52] 2025-10-11 18:52:51,614 | INFO     | time since job start (2890s) is within the limit (172800.0s)
[2025-10-11 20:53:52] 2025-10-11 18:52:53,020 | WARNING  | process 49507 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 20:53:52] 2025-10-11 18:52:53,020 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837828475/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 20:53:52] 2025-10-11 18:52:53,052 | INFO     | number of running child processes to parent process 49507: 1
[2025-10-11 20:53:52] 2025-10-11 18:52:53,053 | INFO     | maximum number of monitored processes: 6
[2025-10-11 20:53:52] 2025-10-11 18:52:53,619 | INFO     | time since job start (2892s) is within the limit (172800.0s)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,191 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 20:53:52] 2025-10-11 18:52:54,191 | INFO     | found 6 cores (6 cores per socket, 1 socket) , CPU MHz: 4300.209
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-6837828475/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | INFO     | extracted standard info from prmon json
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 20:53:52] 2025-10-11 18:52:54,192 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | fitting pss+swap vs Time
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | sum of square deviations: 21358540.0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | sum of deviations: -1074369698.0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | mean x: 1760207423.0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | mean y: 2510288.56097561
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | -- intersect: 88543839305.70673
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | intersect: 88543839305.70673
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | chi2: 0.05721142603930063
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | -- intersect: 88543839305.70673
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | current memory leak: -50.30 B/s (using 41 data points, chi2=0.06)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | could have reported an average CPU frequency of 4300 MHz (5 samples)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | ..............................
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | . Timing measurements:
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | . get job = 0 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,193 | INFO     | . initial setup = 1 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | . payload setup = 2 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | . stage-in = 0 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | . payload execution = 2869 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | . stage-out = 0 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | . log creation = 0 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,194 | INFO     | ..............................
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | 
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | job summary report
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | --------------------------------------------------
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | PanDA job id: 6837828475
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | task id: 46676269
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | errors: (none)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | pilot state: finished 
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | transexitcode: 0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | exeerrorcode: 0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | exeerrordiag: 
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | exitcode: 0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,620 | INFO     | exitmsg: OK
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | cpuconsumptiontime: 16217 s
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | nevents: 400
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | neventsw: 0
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | pid: 49507
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | pgrp: 49507
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | corecount: 6
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | event service: False
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | sizes: {0: 2348857, 2: 2349119, 11: 2349147, 2875: 2374543, 2877: 2383597, 2881: 2383767}
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | --------------------------------------------------
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | 
[2025-10-11 20:53:52] 2025-10-11 18:52:54,621 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,629 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | job 6837828475 has completed (purged errors)
[2025-10-11 20:53:52] 2025-10-11 18:52:54,630 | INFO     | overall cleanup function is called
[2025-10-11 20:53:52] 2025-10-11 18:52:55,636 | INFO     | --- collectZombieJob: --- 10, [49507]
[2025-10-11 20:53:52] 2025-10-11 18:52:55,636 | INFO     | zombie collector waiting for pid 49507
[2025-10-11 20:53:52] 2025-10-11 18:52:55,636 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 20:53:52] 2025-10-11 18:52:55,636 | INFO     | collected zombie processes
[2025-10-11 20:53:52] 2025-10-11 18:52:55,636 | INFO     | will attempt to kill all subprocesses of pid=49507
[2025-10-11 20:53:52] 2025-10-11 18:52:55,669 | INFO     | process IDs to be killed: [49507] (in reverse order)
[2025-10-11 20:53:52] 2025-10-11 18:52:55,686 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 20:53:52] 2025-10-11 18:52:55,686 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 20:53:52] 2025-10-11 18:52:55,687 | INFO     | did not find any defunct processes belonging to 49507
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | did not find any defunct processes belonging to 49507
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | ready for new job
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | ***************************************
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | ***************************************
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | 
[2025-10-11 20:53:52] 2025-10-11 18:52:55,688 | INFO     | architecture information:
[2025-10-11 20:53:52] 2025-10-11 18:52:55,689 | INFO     | executing command: cat /etc/os-release
[2025-10-11 20:53:52] 2025-10-11 18:52:55,694 | INFO     | cat /etc/os-release:
[2025-10-11 20:53:52] NAME="CentOS Linux"
[2025-10-11 20:53:52] VERSION="7 (Core)"
[2025-10-11 20:53:52] ID="centos"
[2025-10-11 20:53:52] ID_LIKE="rhel fedora"
[2025-10-11 20:53:52] VERSION_ID="7"
[2025-10-11 20:53:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 20:53:52] ANSI_COLOR="0;31"
[2025-10-11 20:53:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 20:53:52] HOME_URL="https://www.centos.org/"
[2025-10-11 20:53:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 20:53:52] 
[2025-10-11 20:53:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 20:53:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 20:53:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 20:53:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 20:53:52] 
[2025-10-11 20:53:52] 2025-10-11 18:52:55,694 | INFO     | ***************************************
[2025-10-11 20:53:52] 2025-10-11 18:52:56,197 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2025-10-11 20:53:52] 2025-10-11 18:52:56,202 | INFO     | sufficient remaining disk space (871597342720 B)
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | INFO     | update_server=False
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:53:52] 2025-10-11 18:52:56,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 20:53:52] 2025-10-11 18:52:56,227 | INFO     | all job control threads have been joined
[2025-10-11 20:53:52] 2025-10-11 18:52:56,312 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 20:53:52] 2025-10-11 18:52:56,561 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 20:53:52] 2025-10-11 18:52:56,561 | INFO     | aborting loop
[2025-10-11 20:53:52] 2025-10-11 18:52:56,941 | INFO     | all payload control threads have been joined
[2025-10-11 20:53:52] 2025-10-11 18:52:56,975 | INFO     | all data control threads have been joined
[2025-10-11 20:53:52] 2025-10-11 18:52:57,208 | INFO     | [job] retrieve thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,208 | INFO     | [job] queue monitor thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,211 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,232 | INFO     | [job] control thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,283 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,327 | INFO     | [data] copytool_in thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,566 | INFO     | [job] job monitor thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,703 | INFO     | [payload] validate_post thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,946 | INFO     | [payload] control thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:57,981 | INFO     | [data] control thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:58,208 | INFO     | [data] copytool_out thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:58,395 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:58,631 | INFO     | [job] validate thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:52:58,723 | INFO     | [payload] failed_post thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:53:00,318 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:53:07,085 | INFO     | job.realtimelogging is not enabled
[2025-10-11 20:53:52] 2025-10-11 18:53:08,090 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 20:53:52] 2025-10-11 18:53:25,708 | INFO     | 2895s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 20:53:52] 2025-10-11 18:53:26,754 | INFO     | PID=42951 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 20:53:52] 2025-10-11 18:53:26,754 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 20:53:52] 2025-10-11 18:53:26,754 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 20:53:52] 2025-10-11 18:53:26,754 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 20:53:52] 2025-10-11 18:53:45,878 | INFO     | [monitor] cgroup control has ended
[2025-10-11 20:53:52] 2025-10-11 18:53:47,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140331861702464)>', '<ExcThread(monitor, started 140331177719552)>']
[2025-10-11 20:53:52] 2025-10-11 18:53:47,839 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 20:53:52] 2025-10-11 18:53:47,839 | INFO     | [monitor] control thread has ended
[2025-10-11 20:53:52] 2025-10-11 18:53:52,634 | INFO     | all workflow threads have been joined
[2025-10-11 20:53:52] 2025-10-11 18:53:52,634 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 20:53:52] 2025-10-11 18:53:52,634 | INFO     | traces error code: 0
[2025-10-11 20:53:52] 2025-10-11 18:53:52,634 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 20:53:52] 2025-10-11 18:53:52,678 [wrapper] ==== pilot stdout END ====
[2025-10-11 20:53:52] 2025-10-11 18:53:52,679 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 20:53:52] 2025-10-11 18:53:52,681 [wrapper] pilotpid: 42951
[2025-10-11 20:53:52] 2025-10-11 18:53:52,682 [wrapper] Pilot exit status: 0
[2025-10-11 20:53:52] 2025-10-11 18:53:52,685 [wrapper] pandaids: 6837828475
[2025-10-11 20:53:52] 2025-10-11 18:53:52,694 [wrapper] cleanup supervisor_pilot   58632 42952
[2025-10-11 20:53:52] 2025-10-11 18:53:52,695 [wrapper] Test setup, not cleaning
[2025-10-11 20:53:52] 2025-10-11 18:53:52,697 [wrapper] apfmon messages muted
[2025-10-11 20:53:52] 2025-10-11 18:53:52,698 [wrapper] ==== wrapper stdout END ====
[2025-10-11 20:53:52] 2025-10-11 18:53:52,699 [wrapper] ==== wrapper stderr END ====
[2025-10-11 20:53:52]  *** Error codes and diagnostics ***
[2025-10-11 20:53:52]     "exeErrorCode": 0,
[2025-10-11 20:53:52]     "exeErrorDiag": "",
[2025-10-11 20:53:52]     "pilotErrorCode": 0,
[2025-10-11 20:53:52]     "pilotErrorDiag": "",
[2025-10-11 20:53:52]  *** Listing of results directory ***
[2025-10-11 20:53:52] total 409492
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc      5112 Oct 10 23:48 queuedata.json
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc    557409 Oct 10 23:48 pilot3.tar.gz
[2025-10-11 20:53:52] -rwx------ 1 boinc boinc     36292 Oct 10 23:54 runpilot2-wrapper.sh
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 20:53:52] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:04 run_atlas
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:04 job.xml
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc 221452173 Oct 11 20:04 EVNT.46676267._001857.pool.root.1
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:04 start_atlas.sh
[2025-10-11 20:53:52] drwxrwx--x 2 boinc boinc        68 Oct 11 20:04 shared
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc    569685 Oct 11 20:04 input.tar.gz
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc      6549 Oct 11 20:04 init_data.xml
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:04 boinc_lockfile
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc      2550 Oct 11 20:04 pandaJob.out
[2025-10-11 20:53:52] -rw------- 1 boinc boinc    975520 Oct 11 20:04 agis_schedconf.cvmfs.json
[2025-10-11 20:53:52] -rw------- 1 boinc boinc   1560580 Oct 11 20:04 agis_ddmendpoints.agis.ALL.json
[2025-10-11 20:53:52] drwx------ 5 boinc boinc      4096 Oct 11 20:04 pilot3
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc       529 Oct 11 20:52 boinc_task_state.xml
[2025-10-11 20:53:52] -rw------- 1 boinc boinc 192561485 Oct 11 20:52 HITS.46676269._045936.pool.root.1
[2025-10-11 20:53:52] -rw------- 1 boinc boinc      1008 Oct 11 20:52 memory_monitor_summary.json
[2025-10-11 20:53:52] -rw------- 1 boinc boinc    260427 Oct 11 20:52 log.46676269._045936.job.log.tgz.1
[2025-10-11 20:53:52] -rw------- 1 boinc boinc      7779 Oct 11 20:52 heartbeat.json
[2025-10-11 20:53:52] -rw------- 1 boinc boinc        95 Oct 11 20:52 pilot_heartbeat.json
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc        27 Oct 11 20:53 wrapper_checkpoint.txt
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc      8192 Oct 11 20:53 boinc_mmap_file
[2025-10-11 20:53:52] -rw------- 1 boinc boinc      4934 Oct 11 20:53 pilotlog.txt
[2025-10-11 20:53:52] -rw------- 1 boinc boinc    444132 Oct 11 20:53 log.46676269._045936.job.log.1
[2025-10-11 20:53:52] -rw------- 1 boinc boinc       357 Oct 11 20:53 output.list
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc       620 Oct 11 20:53 runtime_log
[2025-10-11 20:53:52] -rw------- 1 boinc boinc    727040 Oct 11 20:53 result.tar.gz
[2025-10-11 20:53:52] -rw------- 1 boinc boinc       655 Oct 11 20:53 zZOODmeFaR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmMgQMDmL2MLtn.diag
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc      8716 Oct 11 20:53 runtime_log.err
[2025-10-11 20:53:52] -rw-r--r-- 1 boinc boinc     21759 Oct 11 20:53 stderr.txt
[2025-10-11 20:53:52] HITS file was successfully produced:
[2025-10-11 20:53:52] -rw------- 1 boinc boinc 192561485 Oct 11 20:52 shared/HITS.pool.root.1
[2025-10-11 20:53:52]  *** Contents of shared directory: ***
[2025-10-11 20:53:52] total 405604
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc 221452173 Oct 11 20:04 ATLAS.root_0
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:04 start_atlas.sh
[2025-10-11 20:53:52] -rw-r--r-- 2 boinc boinc    569685 Oct 11 20:04 input.tar.gz
[2025-10-11 20:53:52] -rw------- 1 boinc boinc 192561485 Oct 11 20:52 HITS.pool.root.1
[2025-10-11 20:53:52] -rw------- 1 boinc boinc    727040 Oct 11 20:53 result.tar.gz
20:53:54 (38723): run_atlas exited; CPU time 16231.155550
20:53:54 (38723): called boinc_finish(0)

</stderr_txt>
]]>

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