Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 02:00:57 (19240): vboxwrapper version 26210
2025-10-11 02:00:57 (19240): BOINC client version: 8.2.5
2025-10-11 02:00:57 (19240): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-11 02:00:58 (19240): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 02:00:58 (19240): Create VM. (boinc_f67878bcf728c8a6, slot#1)
2025-10-11 02:00:58 (19240): Setting Memory Size for VM. (4300MB)
2025-10-11 02:00:59 (19240): Setting CPU Count for VM. (3)
2025-10-11 02:00:59 (19240): Setting Chipset Options for VM.
2025-10-11 02:00:59 (19240): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 02:00:59 (19240): Setting Boot Options for VM.
2025-10-11 02:01:00 (19240): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 02:01:00 (19240): Enabling VM Network Access.
2025-10-11 02:01:00 (19240): Disabling USB Support for VM.
2025-10-11 02:01:01 (19240): Disabling COM Port Support for VM.
2025-10-11 02:01:01 (19240): Disabling LPT Port Support for VM.
2025-10-11 02:01:01 (19240): Disabling Audio Support for VM.
2025-10-11 02:01:02 (19240): Disabling Clipboard Support for VM.
2025-10-11 02:01:02 (19240): Disabling Drag and Drop Support for VM.
2025-10-11 02:01:02 (19240): Adding storage controller(s) to VM.
2025-10-11 02:01:02 (19240): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 02:01:03 (19240): Adding VirtualBox Guest Additions to VM.
2025-10-11 02:01:03 (19240): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 02:01:03 (19240): forwarding host port 56347 to guest port 80
2025-10-11 02:01:04 (19240): Enabling remote desktop for VM.
2025-10-11 02:01:04 (19240): Enabling shared directory for VM.
2025-10-11 02:01:05 (19240): Starting VM using VBoxManage interface. (boinc_f67878bcf728c8a6, slot#1)
2025-10-11 02:01:09 (19240): Successfully started VM. (PID = '15504')
2025-10-11 02:01:09 (19240): Reporting VM Process ID to BOINC.
2025-10-11 02:01:09 (19240): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-11 02:01:09 (19240): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 02:01:09 (19240): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 02:01:09 (19240): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 02:01:09 (19240): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 02:01:09 (19240): Detected: Web Application Enabled (http://localhost:56347)
2025-10-11 02:01:09 (19240): Detected: Remote Desktop Enabled (localhost:56348)
2025-10-11 02:01:09 (19240): Preference change detected
2025-10-11 02:01:09 (19240): Setting CPU throttle for VM. (100%)
2025-10-11 02:01:09 (19240): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 02:01:11 (19240): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 02:01:11 (19240): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 02:01:13 (19240): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 02:01:13 (19240): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 02:01:13 (19240): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 02:01:17 (19240): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 02:01:17 (19240): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 02:01:20 (19240): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000099 main     Log opened 2025-10-11T02:01:18.244032000Z
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000194 main     OS Product: Linux
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000208 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000220 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000231 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000231 main     Process ID: 1287
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000232 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 02:01:20 (19240): Guest Log: 00:00:00.000592 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 02:01:20 (19240): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 02:01:20 (19240): Guest Log: [INFO] Mounting shared directory
2025-10-11 02:01:20 (19240): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 02:01:24 (19240): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 02:01:24 (19240): Guest Log: [INFO] Detected branch: prod
2025-10-11 02:01:24 (19240): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 02:01:24 (19240): Guest Log: Copying input files
2025-10-11 02:01:25 (19240): Guest Log: Copied input files into RunAtlas.
2025-10-11 02:01:25 (19240): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 02:01:25 (19240): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 02:01:25 (19240): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 02:01:25 (19240): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 02:01:30 (19240): Guest Log: 00:00:10.001992 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 699 110 000ns (GuestNow=1 760 162 489 944 498 000 ns GuestLast=1 760 148 078 245 388 000 ns fSetTimeLastLoop=true )
2025-10-11 02:01:33 (19240): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 02:01:33 (19240): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 02:01:33 (19240): Guest Log: 2.6.3.0 1565 0 30184 151573 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 02:01:33 (19240): Guest Log: copied the webapp to /var/www
2025-10-11 02:01:33 (19240): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-11 02:01:33 (19240): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-11 02:01:34 (19240): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 02:01:34 (19240): Guest Log:  *** Starting ATLAS job. (PandaID=6837828200 taskID=46676269) ***
2025-10-11 03:41:11 (19240): Status Report: Elapsed Time: '6000.000000'
2025-10-11 03:41:11 (19240): Status Report: CPU Time: '17161.640625'
2025-10-11 04:55:38 (19240): Guest Log:  *** Job finished ***
2025-10-11 04:55:38 (19240): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:09,314 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:09,314 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:26,894 | INFO     | [monitor] cgroup control has ended
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:28,409 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140142722561856)>', '<ExcThread(monitor, started 140142140442368)>']
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:28,538 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:28,538 | INFO     | [monitor] control thread has ended
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,414 | INFO     | all workflow threads have been joined
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,414 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,414 | INFO     | traces error code: 0
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,414 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,502 [wrapper] ==== pilot stdout END ====
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,504 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,507 [wrapper] pilotpid: 5949
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,509 [wrapper] Pilot exit status: 0
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,576 [wrapper] pandaids: 6837828200
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,594 [wrapper] cleanup supervisor_pilot 10434 5950
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,598 [wrapper] Test setup, not cleaning
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,601 [wrapper] apfmon messages muted
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,603 [wrapper] ==== wrapper stdout END ====
2025-10-11 04:55:38 (19240): Guest Log: 2025-10-11 08:55:33,606 [wrapper] ==== wrapper stderr END ====
2025-10-11 04:55:38 (19240): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 04:55:38 (19240): Guest Log:     "exeErrorCode": 0,
2025-10-11 04:55:38 (19240): Guest Log:     "exeErrorDiag": "",
2025-10-11 04:55:38 (19240): Guest Log:     "pilotErrorCode": 0,
2025-10-11 04:55:38 (19240): Guest Log:     "pilotErrorDiag": "",
2025-10-11 04:55:38 (19240): Guest Log:  *** Listing of results directory ***
2025-10-11 04:55:38 (19240): Guest Log: total 198192
2025-10-11 04:55:38 (19240): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 21:48 queuedata.json
2025-10-11 04:55:38 (19240): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 21:48 pilot3.tar.gz
2025-10-11 04:55:38 (19240): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 21:50 runpilot2-wrapper.sh
2025-10-11 04:55:38 (19240): Guest Log: -rwxr-xr-x. 1 atlas atlas     10503 Oct 11 06:01 init_data.xml
2025-10-11 04:55:38 (19240): Guest Log: -rwxr-xr-x. 1 atlas atlas    569676 Oct 11 06:01 input.tar.gz
2025-10-11 04:55:38 (19240): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 06:01 start_atlas.sh
2025-10-11 04:55:38 (19240): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 06:01 EVNT.46676267._001854.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 04:55:38 (19240): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 06:01 pandaJob.out
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas    975533 Oct 11 06:02 agis_schedconf.cvmfs.json
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 06:02 agis_ddmendpoints.agis.ALL.json
2025-10-11 04:55:38 (19240): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 06:02 pilot3
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas 195603331 Oct 11 08:54 HITS.46676269._045874.pool.root.1
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas      1033 Oct 11 08:54 memory_monitor_summary.json
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas    332515 Oct 11 08:54 log.46676269._045874.job.log.tgz.1
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 08:54 pilot_heartbeat.json
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas      7838 Oct 11 08:54 heartbeat.json
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas      5063 Oct 11 08:55 pilotlog.txt
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas   1422813 Oct 11 08:55 log.46676269._045874.job.log.1
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 08:55 output.list
2025-10-11 04:55:38 (19240): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 08:55 runtime_log
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas   1771520 Oct 11 08:55 result.tar.gz
2025-10-11 04:55:38 (19240): Guest Log: -rw-r--r--. 1 atlas atlas      8631 Oct 11 08:55 runtime_log.err
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas       654 Oct 11 08:55 QvoMDmhBaR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmafQMDmNXnKNo.diag
2025-10-11 04:55:38 (19240): Guest Log: Looking for outputfile HITS.46676269._045874.pool.root.1
2025-10-11 04:55:38 (19240): Guest Log: HITS file was successfully produced
2025-10-11 04:55:38 (19240): Guest Log: -rw-------. 1 atlas atlas 195603331 Oct 11 08:54 /home/atlas/RunAtlas/HITS.46676269._045874.pool.root.1
2025-10-11 04:55:39 (19240): Guest Log: Successfully finished the ATLAS job!
2025-10-11 04:55:39 (19240): Guest Log: Copying the results back to the shared directory!
2025-10-11 04:55:39 (19240): Guest Log:  *** Contents of shared directory: ***
2025-10-11 04:55:39 (19240): Guest Log: total 407872
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root 219680515 Oct 11 06:00 ATLAS.root_0
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root 195603331 Oct 11  2025 HITS.pool.root.1
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root     10503 Oct 11 06:00 init_data.xml
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root    569676 Oct 11 03:43 input.tar.gz
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root   1771520 Oct 11  2025 result.tar.gz
2025-10-11 04:55:39 (19240): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 03:43 start_atlas.sh
2025-10-11 04:55:39 (19240): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 04:55:39 (19240): VM Completion File Detected.
2025-10-11 04:55:39 (19240): Powering off VM.
2025-10-11 04:55:40 (19240): Successfully stopped VM.
2025-10-11 04:55:40 (19240): Deregistering VM. (boinc_f67878bcf728c8a6, slot#1)
2025-10-11 04:55:40 (19240): Removing network bandwidth throttle group from VM.
2025-10-11 04:55:40 (19240): Removing VM from VirtualBox.
2025-10-11 04:55:45 (19240): called boinc_finish(0)

</stderr_txt>
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