Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 14:51:17 (14804): vboxwrapper version 26210
2025-10-11 14:51:17 (14804): BOINC client version: 8.2.4
2025-10-11 14:51:18 (14804): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-11 14:51:18 (14804): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 14:51:18 (14804): Create VM. (boinc_8e427b66bec79650, slot#0)
2025-10-11 14:51:19 (14804): Setting Memory Size for VM. (4800MB)
2025-10-11 14:51:19 (14804): Setting CPU Count for VM. (8)
2025-10-11 14:51:20 (14804): Setting Chipset Options for VM.
2025-10-11 14:51:20 (14804): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 14:51:20 (14804): Setting Boot Options for VM.
2025-10-11 14:51:21 (14804): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 14:51:21 (14804): Enabling VM Network Access.
2025-10-11 14:51:21 (14804): Disabling USB Support for VM.
2025-10-11 14:51:21 (14804): Disabling COM Port Support for VM.
2025-10-11 14:51:22 (14804): Disabling LPT Port Support for VM.
2025-10-11 14:51:22 (14804): Disabling Audio Support for VM.
2025-10-11 14:51:22 (14804): Disabling Clipboard Support for VM.
2025-10-11 14:51:22 (14804): Disabling Drag and Drop Support for VM.
2025-10-11 14:51:23 (14804): Adding storage controller(s) to VM.
2025-10-11 14:51:23 (14804): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 14:51:25 (14804): Adding VirtualBox Guest Additions to VM.
2025-10-11 14:51:25 (14804): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 14:51:26 (14804): forwarding host port 63181 to guest port 80
2025-10-11 14:51:26 (14804): Enabling remote desktop for VM.
2025-10-11 14:51:26 (14804): Required extension pack not installed, remote desktop not enabled.
2025-10-11 14:51:26 (14804): Enabling shared directory for VM.
2025-10-11 14:51:27 (14804): Starting VM using VBoxManage interface. (boinc_8e427b66bec79650, slot#0)
2025-10-11 14:51:34 (14804): Successfully started VM. (PID = '8848')
2025-10-11 14:51:34 (14804): Reporting VM Process ID to BOINC.
2025-10-11 14:51:34 (14804): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-11 14:51:34 (14804): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 14:51:34 (14804): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 14:51:34 (14804): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 14:51:34 (14804): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 14:51:34 (14804): Detected: Web Application Enabled (http://localhost:63181)
2025-10-11 14:51:34 (14804): Preference change detected
2025-10-11 14:51:34 (14804): Setting CPU throttle for VM. (100%)
2025-10-11 14:51:34 (14804): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 14:51:36 (14804): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 14:51:36 (14804): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 14:51:39 (14804): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 14:51:39 (14804): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 14:51:39 (14804): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 14:51:44 (14804): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 14:51:44 (14804): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 14:51:49 (14804): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000128 main     Log opened 2025-10-11T14:51:47.142193000Z
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000242 main     OS Product: Linux
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000284 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000320 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000356 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000357 main     Process ID: 1371
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.000358 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 14:51:49 (14804): Guest Log: 00:00:00.002686 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 14:51:49 (14804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 14:51:49 (14804): Guest Log: [INFO] Mounting shared directory
2025-10-11 14:51:49 (14804): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 14:51:59 (14804): Guest Log: 00:00:10.025912 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 509 247 000ns (GuestNow=1 760 208 718 656 098 000 ns GuestLast=1 760 194 307 146 851 000 ns fSetTimeLastLoop=true )
2025-10-11 14:52:58 (14804): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 14:52:58 (14804): Guest Log: [INFO] Detected branch: prod
2025-10-11 14:53:01 (14804): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 14:53:01 (14804): Guest Log: Copying input files
2025-10-11 14:53:02 (14804): Guest Log: Copied input files into RunAtlas.
2025-10-11 14:53:02 (14804): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 14:53:02 (14804): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 14:53:02 (14804): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 14:53:02 (14804): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 14:54:14 (14804): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 14:54:14 (14804): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 14:54:14 (14804): Guest Log: 2.6.3.0 1679 1 32044 151593 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 14:54:14 (14804): Guest Log: copied the webapp to /var/www
2025-10-11 14:54:14 (14804): Guest Log: ATHENA_PROC_NUMBER=8
2025-10-11 14:54:14 (14804): Guest Log: ATHENA_CORE_NUMBER=8
2025-10-11 14:54:15 (14804): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 14:54:15 (14804): Guest Log:  *** Starting ATLAS job. (PandaID=6837707176 taskID=46676269) ***
2025-10-11 16:31:38 (14804): Status Report: Elapsed Time: '6000.000000'
2025-10-11 16:31:38 (14804): Status Report: CPU Time: '40592.328125'
2025-10-11 17:20:29 (14804): Guest Log:  *** Job finished ***
2025-10-11 17:20:29 (14804): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:19:56,843 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:19:56,843 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:20,632 | INFO     | [monitor] cgroup control has ended
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:21,111 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108077086528)>', '<ExcThread(monitor, started 140107109615360)>']
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:21,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:21,180 | INFO     | [monitor] control thread has ended
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,168 | INFO     | all workflow threads have been joined
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,168 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,168 | INFO     | traces error code: 0
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,169 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,241 [wrapper] ==== pilot stdout END ====
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,247 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,258 [wrapper] pilotpid: 6130
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,263 [wrapper] Pilot exit status: 0
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,399 [wrapper] pandaids: 6837707176
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,442 [wrapper] cleanup supervisor_pilot  5557 6131
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,448 [wrapper] Test setup, not cleaning
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,454 [wrapper] apfmon messages muted
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,460 [wrapper] ==== wrapper stdout END ====
2025-10-11 17:20:29 (14804): Guest Log: 2025-10-11 21:20:26,467 [wrapper] ==== wrapper stderr END ====
2025-10-11 17:20:29 (14804): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 17:20:29 (14804): Guest Log:     "exeErrorCode": 0,
2025-10-11 17:20:29 (14804): Guest Log:     "exeErrorDiag": "",
2025-10-11 17:20:29 (14804): Guest Log:     "pilotErrorCode": 0,
2025-10-11 17:20:29 (14804): Guest Log:     "pilotErrorDiag": "",
2025-10-11 17:20:29 (14804): Guest Log:  *** Listing of results directory ***
2025-10-11 17:20:29 (14804): Guest Log: total 192024
2025-10-11 17:20:29 (14804): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 18:53 pilot3.tar.gz
2025-10-11 17:20:29 (14804): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 19:00 queuedata.json
2025-10-11 17:20:29 (14804): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 19:02 runpilot2-wrapper.sh
2025-10-11 17:20:29 (14804): Guest Log: -rwxr-xr-x. 1 atlas atlas     11292 Oct 11 18:53 init_data.xml
2025-10-11 17:20:29 (14804): Guest Log: -rwxr-xr-x. 1 atlas atlas    569684 Oct 11 18:53 input.tar.gz
2025-10-11 17:20:29 (14804): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 18:53 start_atlas.sh
2025-10-11 17:20:29 (14804): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 18:53 EVNT.46676267._001759.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 17:20:29 (14804): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 18:54 pandaJob.out
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas    975520 Oct 11 18:55 agis_schedconf.cvmfs.json
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 18:55 agis_ddmendpoints.agis.ALL.json
2025-10-11 17:20:29 (14804): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 18:56 pilot3
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas 189802066 Oct 11 21:18 HITS.46676269._043441.pool.root.1
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas      1031 Oct 11 21:19 memory_monitor_summary.json
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas    366385 Oct 11 21:19 log.46676269._043441.job.log.tgz.1
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 21:19 pilot_heartbeat.json
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas      7829 Oct 11 21:19 heartbeat.json
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 11 21:20 pilotlog.txt
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas   1134456 Oct 11 21:20 log.46676269._043441.job.log.1
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 21:20 output.list
2025-10-11 17:20:29 (14804): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 21:20 runtime_log
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas   1515520 Oct 11 21:20 result.tar.gz
2025-10-11 17:20:29 (14804): Guest Log: -rw-r--r--. 1 atlas atlas      8657 Oct 11 21:20 runtime_log.err
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas       661 Oct 11 21:20 MFAODmpYXR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmJ9dNDmRHlghm.diag
2025-10-11 17:20:29 (14804): Guest Log: Looking for outputfile HITS.46676269._043441.pool.root.1
2025-10-11 17:20:29 (14804): Guest Log: HITS file was successfully produced
2025-10-11 17:20:29 (14804): Guest Log: -rw-------. 1 atlas atlas 189802066 Oct 11 21:18 /home/atlas/RunAtlas/HITS.46676269._043441.pool.root.1
2025-10-11 17:20:31 (14804): Guest Log: Successfully finished the ATLAS job!
2025-10-11 17:20:31 (14804): Guest Log: Copying the results back to the shared directory!
2025-10-11 17:20:31 (14804): Guest Log:  *** Contents of shared directory: ***
2025-10-11 17:20:31 (14804): Guest Log: total 402612
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root 220351298 Oct 11 18:51 ATLAS.root_0
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root 189802066 Oct 11 21:20 HITS.pool.root.1
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root     11292 Oct 11 18:51 init_data.xml
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root    569684 Oct 11 03:16 input.tar.gz
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root   1515520 Oct 11 21:20 result.tar.gz
2025-10-11 17:20:31 (14804): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 03:16 start_atlas.sh
2025-10-11 17:20:31 (14804): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 17:20:31 (14804): VM Completion File Detected.
2025-10-11 17:20:31 (14804): Powering off VM.
2025-10-11 17:20:31 (14804): Successfully stopped VM.
2025-10-11 17:20:31 (14804): Deregistering VM. (boinc_8e427b66bec79650, slot#0)
2025-10-11 17:20:31 (14804): Removing network bandwidth throttle group from VM.
2025-10-11 17:20:31 (14804): Removing VM from VirtualBox.
2025-10-11 17:20:37 (14804): called boinc_finish(0)

</stderr_txt>
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