Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:26:23 (590067): wrapper (7.7.26015): starting
20:26:23 (590067): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 20:26:23] Arguments: --nthreads 12
[2025-10-10 20:26:23] Threads: 12
[2025-10-10 20:26:23] Checking for CVMFS
[2025-10-10 20:26:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 20:26:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 20:26:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 20:26:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 20:26:25] 2.11.5.0 2579 29513 228776 151571 0 613 35228732 45568001 19327 130560 0 297635557 99.864 130324945 26924 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-10 20:26:25] CVMFS is ok
[2025-10-10 20:26:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 20:26:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 20:26:25] Further information can be found at the LHC@home message board.
[2025-10-10 20:26:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 20:26:25] Checking for apptainer binary...
[2025-10-10 20:26:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 20:26:25] Running /usr/bin/apptainer --version
[2025-10-10 20:26:25] apptainer version 1.4.1-1.el9
[2025-10-10 20:26:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 20:26:26] wns0061.triumf.lcg
[2025-10-10 20:26:26] apptainer works
[2025-10-10 20:26:26] Set ATHENA_PROC_NUMBER=12
[2025-10-10 20:26:26] Set ATHENA_CORE_NUMBER=12
[2025-10-10 20:26:26] Starting ATLAS job with PandaID=6837876109
[2025-10-10 20:26:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 20:31:22]  *** The last 200 lines of the pilot log: ***
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | WARNING  | wrong length of table data, x=[1760153285.0], y=[1863.0] (must be same and length>=4)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | could have reported an average CPU frequency of 2588 MHz (4 samples)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . Timing measurements:
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . get job = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . initial setup = 3 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload setup = 17 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . stage-in = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload execution = 40 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . stage-out = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . log creation = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837876109/pilotlog.txt
[2025-10-10 20:31:22] 2025-10-11 03:30:48,959 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 20:31:22] - Log from pilotlog.txt -
[2025-10-10 20:31:22] 2025-10-11 03:30:48,940 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837876109/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,943 | INFO     | extracted standard info from prmon json
[2025-10-10 20:31:22] 2025-10-11 03:30:48,943 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | WARNING  | wrong length of table data, x=[1760153285.0], y=[1863.0] (must be same and length>=4)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | could have reported an average CPU frequency of 2588 MHz (4 samples)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . Timing measurements:
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . get job = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . initial setup = 3 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload setup = 17 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . stage-in = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload execution = 40 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . stage-out = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . log creation = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837876109/pilotlog.txt
[2025-10-10 20:31:22] 2025-10-11 03:30:48,960 | WARNING  | 
[2025-10-10 20:31:22] [begin log extracts]
[2025-10-10 20:31:22] - Log from pilotlog.txt -
[2025-10-10 20:31:22] 2025-10-11 03:30:48,940 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837876109/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,943 | INFO     | extracted standard info from prmon json
[2025-10-10 20:31:22] 2025-10-11 03:30:48,943 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 20:31:22] 2025-10-11 03:30:48,944 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | WARNING  | wrong length of table data, x=[1760153285.0], y=[1863.0] (must be same and length>=4)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | could have reported an average CPU frequency of 2588 MHz (4 samples)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . Timing measurements:
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . get job = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . initial setup = 3 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload setup = 17 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . stage-in = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,945 | INFO     | . payload execution = 40 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . stage-out = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | . log creation = 0 s
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | ..............................
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 20:31:22] 2025-10-11 03:30:48,946 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837876109/pilotlog.txt
[2025-10-10 20:31:22] [end log extracts]
[2025-10-10 20:31:22] 2025-10-11 03:30:48,960 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 20:31:22] 2025-10-11 03:30:48,960 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | 
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | job summary report
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | --------------------------------------------------
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | PanDA job id: 6837876109
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | task id: 46676269
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 20:28:24,653 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | pilot state: failed 
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | transexitcode: 65
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | exeerrorcode: 65
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | exitcode: 65
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | cpuconsumptiontime: 18 s
[2025-10-10 20:31:22] 2025-10-11 03:30:49,301 | INFO     | nevents: 0
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | neventsw: 0
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | pid: 600530
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | pgrp: 600530
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | corecount: 12
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | event service: False
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | sizes: {0: 2348803, 11: 2348803, 13: 2349093, 22: 2349149, 61: 2372418, 63: 2376710, 65: 2376866, 197: 2377032}
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | --------------------------------------------------
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | 
[2025-10-10 20:31:22] 2025-10-11 03:30:49,302 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,424 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | job 6837876109 has completed (purged errors)
[2025-10-10 20:31:22] 2025-10-11 03:30:49,425 | INFO     | overall cleanup function is called
[2025-10-10 20:31:22] 2025-10-11 03:30:50,432 | INFO     | --- collectZombieJob: --- 10, [600530]
[2025-10-10 20:31:22] 2025-10-11 03:30:50,433 | INFO     | zombie collector waiting for pid 600530
[2025-10-10 20:31:22] 2025-10-11 03:30:50,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 20:31:22] 2025-10-11 03:30:50,433 | INFO     | collected zombie processes
[2025-10-10 20:31:22] 2025-10-11 03:30:50,433 | INFO     | will attempt to kill all subprocesses of pid=600530
[2025-10-10 20:31:22] 2025-10-11 03:30:50,743 | INFO     | process IDs to be killed: [600530] (in reverse order)
[2025-10-10 20:31:22] 2025-10-11 03:30:51,084 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 20:31:22] 2025-10-11 03:30:51,084 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 20:31:22] 2025-10-11 03:30:51,121 | INFO     | did not find any defunct processes belonging to 600530
[2025-10-10 20:31:22] 2025-10-11 03:30:51,139 | INFO     | did not find any defunct processes belonging to 600530
[2025-10-10 20:31:22] 2025-10-11 03:30:51,139 | INFO     | ready for new job
[2025-10-10 20:31:22] 2025-10-11 03:30:51,139 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 20:31:22] 2025-10-11 03:30:51,141 | INFO     | ***************************************
[2025-10-10 20:31:22] 2025-10-11 03:30:51,141 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 20:31:22] 2025-10-11 03:30:51,141 | INFO     | ***************************************
[2025-10-10 20:31:22] 2025-10-11 03:30:51,141 | INFO     | 
[2025-10-10 20:31:22] 2025-10-11 03:30:51,143 | INFO     | architecture information:
[2025-10-10 20:31:22] 2025-10-11 03:30:51,144 | INFO     | executing command: cat /etc/os-release
[2025-10-10 20:31:22] 2025-10-11 03:30:51,193 | INFO     | cat /etc/os-release:
[2025-10-10 20:31:22] NAME="CentOS Linux"
[2025-10-10 20:31:22] VERSION="7 (Core)"
[2025-10-10 20:31:22] ID="centos"
[2025-10-10 20:31:22] ID_LIKE="rhel fedora"
[2025-10-10 20:31:22] VERSION_ID="7"
[2025-10-10 20:31:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 20:31:22] ANSI_COLOR="0;31"
[2025-10-10 20:31:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 20:31:22] HOME_URL="https://www.centos.org/"
[2025-10-10 20:31:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 20:31:22] 
[2025-10-10 20:31:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 20:31:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 20:31:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 20:31:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 20:31:22] 
[2025-10-10 20:31:22] 2025-10-11 03:30:51,193 | INFO     | ***************************************
[2025-10-10 20:31:22] 2025-10-11 03:30:51,697 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-10 20:31:22] 2025-10-11 03:30:51,749 | INFO     | sufficient remaining disk space (1928927903744 B)
[2025-10-10 20:31:22] 2025-10-11 03:30:51,749 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | INFO     | update_server=False
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:31:22] 2025-10-11 03:30:51,750 | INFO     | aborting loop
[2025-10-10 20:31:22] 2025-10-11 03:30:52,214 | INFO     | all payload control threads have been joined
[2025-10-10 20:31:22] 2025-10-11 03:30:52,619 | INFO     | all data control threads have been joined
[2025-10-10 20:31:22] 2025-10-11 03:30:52,757 | INFO     | [job] retrieve thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:52,768 | INFO     | [job] job monitor thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:52,865 | INFO     | all job control threads have been joined
[2025-10-10 20:31:22] 2025-10-11 03:30:53,221 | INFO     | [payload] control thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,433 | INFO     | [job] validate thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,517 | INFO     | [data] copytool_in thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,626 | INFO     | [data] control thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,641 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 20:31:22] 2025-10-11 03:30:53,756 | INFO     | [data] copytool_out thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,760 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,872 | INFO     | [job] control thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,934 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,942 | INFO     | [payload] failed_post thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:53,944 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:54,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:31:22] 2025-10-11 03:30:54,164 | INFO     | [payload] validate_post thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:54,192 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:55,043 | INFO     | [job] queue monitor thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:55,284 | INFO     | [monitor] cgroup control has ended
[2025-10-10 20:31:22] 2025-10-11 03:30:57,649 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 20:31:22] 2025-10-11 03:30:58,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140286193108800)>', '<ExcThread(monitor, started 140285803734784)>']
[2025-10-10 20:31:22] 2025-10-11 03:31:03,228 | INFO     | all workflow threads have been joined
[2025-10-10 20:31:22] 2025-10-11 03:31:03,229 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 20:31:22] 2025-10-11 03:31:03,229 | INFO     | traces error code: 0
[2025-10-10 20:31:22] 2025-10-11 03:31:03,229 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 20:31:22] 2025-10-11 03:31:21,722 | INFO     | PID=593808 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 20:31:22] 2025-10-11 03:31:21,722 | INFO     | .. there are 35 such processes running
[2025-10-10 20:31:22] 2025-10-11 03:31:21,723 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 20:31:22] 2025-10-11 03:31:21,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 20:31:22] 2025-10-11 03:31:21,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 20:31:22] 2025-10-11 03:31:21,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 20:31:22] 2025-10-11 03:31:21,723 | INFO     | [monitor] control thread has ended
[2025-10-10 20:31:22] 2025-10-11 03:31:21,837 [wrapper] ==== pilot stdout END ====
[2025-10-10 20:31:22] 2025-10-11 03:31:21,840 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 20:31:22] 2025-10-11 03:31:21,842 [wrapper] pilotpid: 593808
[2025-10-10 20:31:22] 2025-10-11 03:31:21,844 [wrapper] Pilot exit status: 0
[2025-10-10 20:31:22] 2025-10-11 03:31:21,852 [wrapper] pandaids: 6837876109
[2025-10-10 20:31:22] 2025-10-11 03:31:21,901 [wrapper] cleanup supervisor_pilot  593814 593809
[2025-10-10 20:31:22] 2025-10-11 03:31:21,903 [wrapper] Test setup, not cleaning
[2025-10-10 20:31:22] 2025-10-11 03:31:21,905 [wrapper] apfmon messages muted
[2025-10-10 20:31:22] 2025-10-11 03:31:21,907 [wrapper] ==== wrapper stdout END ====
[2025-10-10 20:31:22] 2025-10-11 03:31:21,909 [wrapper] ==== wrapper stderr END ====
[2025-10-10 20:31:22]  *** Error codes and diagnostics ***
[2025-10-10 20:31:22]     "exeErrorCode": 65,
[2025-10-10 20:31:22]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 20:31:22]     "pilotErrorCode": 1305,
[2025-10-10 20:31:22]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 20:31:22]  *** Listing of results directory ***
[2025-10-10 20:31:22] total 223540
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc    557409 Oct 10 17:33 pilot3.tar.gz
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc      5112 Oct 10 17:38 queuedata.json
[2025-10-10 20:31:22] -rwx------. 1 boinc boinc     36292 Oct 10 17:39 runpilot2-wrapper.sh
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc       100 Oct 10 20:26 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 20:31:22] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 20:26 run_atlas
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc       105 Oct 10 20:26 job.xml
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc 224777428 Oct 10 20:26 EVNT.46676267._001938.pool.root.1
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc      6594 Oct 10 20:26 init_data.xml
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc     15120 Oct 10 20:26 start_atlas.sh
[2025-10-10 20:31:22] drwxrwx--x. 2 boinc boinc      4096 Oct 10 20:26 shared
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc    569678 Oct 10 20:26 input.tar.gz
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc         0 Oct 10 20:26 boinc_lockfile
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc      2549 Oct 10 20:26 pandaJob.out
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc    975509 Oct 10 20:26 agis_schedconf.cvmfs.json
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc   1560580 Oct 10 20:26 agis_ddmendpoints.agis.ALL.json
[2025-10-10 20:31:22] drwx------. 5 boinc boinc      4096 Oct 10 20:26 pilot3
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc       962 Oct 10 20:28 memory_monitor_summary.json
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc       523 Oct 10 20:28 boinc_task_state.xml
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc     21748 Oct 10 20:28 log.46676269._047998.job.log.tgz.1
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc      8401 Oct 10 20:30 heartbeat.json
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc      8192 Oct 10 20:31 boinc_mmap_file
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc        22 Oct 10 20:31 wrapper_checkpoint.txt
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc       822 Oct 10 20:31 pilotlog.txt
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc        95 Oct 10 20:31 pilot_heartbeat.json
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc     91283 Oct 10 20:31 log.46676269._047998.job.log.1
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc       188 Oct 10 20:31 output.list
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc       620 Oct 10 20:31 runtime_log
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc    133120 Oct 10 20:31 result.tar.gz
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc       644 Oct 10 20:31 UrdLDmqocR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzueNDmkzWwXn.diag
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc      8528 Oct 10 20:31 runtime_log.err
[2025-10-10 20:31:22] -rw-r--r--. 1 boinc boinc     21779 Oct 10 20:31 stderr.txt
[2025-10-10 20:31:22] No HITS result produced
[2025-10-10 20:31:22]  *** Contents of shared directory: ***
[2025-10-10 20:31:22] total 220220
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc 224777428 Oct 10 20:26 ATLAS.root_0
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc     15120 Oct 10 20:26 start_atlas.sh
[2025-10-10 20:31:22] -rw-r--r--. 2 boinc boinc    569678 Oct 10 20:26 input.tar.gz
[2025-10-10 20:31:22] -rw-------. 1 boinc boinc    133120 Oct 10 20:31 result.tar.gz
20:31:23 (590067): run_atlas exited; CPU time 26.338833
20:31:23 (590067): called boinc_finish(0)

</stderr_txt>
]]>

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