Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
03:27:55 (4041306): wrapper (7.7.26015): starting
03:27:55 (4041306): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 03:27:55] Arguments: --nthreads 12
[2025-10-11 03:27:55] Threads: 12
[2025-10-11 03:27:55] Checking for CVMFS
[2025-10-11 03:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 03:27:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 03:27:55] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 03:27:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 03:27:55] 2.11.0.0 3299214 1081 84956 151571 2 188 5026587 6144001 14650 130560 0 21283490 100.000 43147 211 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-11 03:27:55] CVMFS is ok
[2025-10-11 03:27:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 03:27:55] Checking for apptainer binary...
[2025-10-11 03:27:55] apptainer is not installed, using version from CVMFS
[2025-10-11 03:27:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 03:27:56] radiat0r
[2025-10-11 03:27:56] apptainer works
[2025-10-11 03:27:56] Set ATHENA_PROC_NUMBER=12
[2025-10-11 03:27:56] Set ATHENA_CORE_NUMBER=12
[2025-10-11 03:27:56] Starting ATLAS job with PandaID=6827325781
[2025-10-11 03:27:56] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 04:15:21]  *** The last 200 lines of the pilot log: ***
[2025-10-11 04:15:21] ]
[2025-10-11 04:15:21] 2025-10-11 04:14:22,807 | INFO     | transferring file log.46376905._028726.job.log.tgz.1 from /var/lib/boinc/slots/16/PanDA_Pilot-6827325781/log.46376905._028726.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-11 04:15:21] 2025-10-11 04:14:22,807 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/16/PanDA_Pilot-6827325781/log.46376905._028726.job.log.tgz.1 /var/lib/boinc/slots/16/log.46376905._028726.j
[2025-10-11 04:15:21] 2025-10-11 04:14:22,835 | INFO     | adding to output.list: log.46376905._028726.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/87/fb/log.46376905._028726.job.log.tg
[2025-10-11 04:15:21] 2025-10-11 04:14:22,836 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 04:15:21] 2025-10-11 04:14:22,837 | INFO     | summary of transferred files:
[2025-10-11 04:15:21] 2025-10-11 04:14:22,837 | INFO     |  -- lfn=log.46376905._028726.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 04:15:21] 2025-10-11 04:14:22,837 | INFO     | stage-out finished correctly
[2025-10-11 04:15:21] 2025-10-11 04:14:22,933 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 04:15:21] 2025-10-11 04:14:23,782 | INFO     | time since job start (2773s) is within the limit (172800.0s)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,380 | WARNING  | process 4054184 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 04:15:21] 2025-10-11 04:14:24,380 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6827325781/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,381 | INFO     | reaping zombies for max 20 seconds
[2025-10-11 04:15:21] 2025-10-11 04:14:24,401 | INFO     | checking for looping job (in state=finished)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,401 | INFO     | using looping job limit: 7200 s
[2025-10-11 04:15:21] 2025-10-11 04:14:24,451 | INFO     | job 6827325781 has state=finished
[2025-10-11 04:15:21] 2025-10-11 04:14:24,451 | INFO     | preparing for final server update for job 6827325781 in state='finished'
[2025-10-11 04:15:21] 2025-10-11 04:14:24,452 | INFO     | this job has now completed (state=finished)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,452 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,452 | INFO     | log transfer has been attempted: DONE
[2025-10-11 04:15:21] 2025-10-11 04:14:24,452 | INFO     | job 6827325781 has finished - writing final server update
[2025-10-11 04:15:21] 2025-10-11 04:14:24,453 | INFO     | total number of processed events: 400 (read)
[2025-10-11 04:15:21] 2025-10-11 04:14:24,454 | INFO     | executing command: lscpu
[2025-10-11 04:15:21] 2025-10-11 04:14:24,623 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 04:15:21] 2025-10-11 04:14:25,141 | INFO     | number of running child processes to parent process 4054184: 1
[2025-10-11 04:15:21] 2025-10-11 04:14:25,141 | INFO     | maximum number of monitored processes: 6
[2025-10-11 04:15:21] 2025-10-11 04:14:25,787 | INFO     | time since job start (2775s) is within the limit (172800.0s)
[2025-10-11 04:15:21] 2025-10-11 04:14:27,642 | INFO     | monitor loop #194: job 0:6827325781 is in state 'finished'
[2025-10-11 04:15:21] 2025-10-11 04:14:27,643 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:15:21] 2025-10-11 04:14:27,790 | INFO     | time since job start (2777s) is within the limit (172800.0s)
[2025-10-11 04:15:21] 2025-10-11 04:14:29,795 | INFO     | time since job start (2779s) is within the limit (172800.0s)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,086 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 04:15:21] 2025-10-11 04:14:30,146 | INFO     | monitor loop #195: job 0:6827325781 is in state 'finished'
[2025-10-11 04:15:21] 2025-10-11 04:14:30,146 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,153 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2288.360718749999
[2025-10-11 04:15:21] 2025-10-11 04:14:30,223 | INFO     | using path: /var/lib/boinc/slots/16/PanDA_Pilot-6827325781/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,224 | INFO     | extracted standard info from prmon json
[2025-10-11 04:15:21] 2025-10-11 04:14:30,224 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 04:15:21] 2025-10-11 04:14:30,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 04:15:21] 2025-10-11 04:14:30,224 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 04:15:21] 2025-10-11 04:14:30,224 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 04:15:21] 2025-10-11 04:14:30,226 | INFO     | fitting pss+swap vs Time
[2025-10-11 04:15:21] 2025-10-11 04:14:30,226 | INFO     | sum of square deviations: 17003109.5
[2025-10-11 04:15:21] 2025-10-11 04:14:30,226 | INFO     | sum of deviations: 298247696.5
[2025-10-11 04:15:21] 2025-10-11 04:14:30,226 | INFO     | mean x: 1760154758.5
[2025-10-11 04:15:21] 2025-10-11 04:14:30,226 | INFO     | mean y: 2672639.8157894737
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | -- intersect: -30871803714.414524
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | intersect: -30871803714.414524
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | chi2: 0.0007859003691707159
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | -- intersect: -30871803714.414524
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | current memory leak: 17.54 B/s (using 38 data points, chi2=0.00)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,227 | INFO     | could have reported an average CPU frequency of 2313 MHz (5 samples)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | ..............................
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . Timing measurements:
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . get job = 0 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . initial setup = 1 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . payload setup = 8 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . stage-in = 0 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . payload execution = 2739 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . stage-out = 0 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | . log creation = 0 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,228 | INFO     | ..............................
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | 
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | job summary report
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | --------------------------------------------------
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | PanDA job id: 6827325781
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | task id: 46376905
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | errors: (none)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,368 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | pilot state: finished 
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | transexitcode: 0
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | exeerrorcode: 0
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | exeerrordiag: 
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | exitcode: 0
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | exitmsg: OK
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | cpuconsumptiontime: 28807 s
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | nevents: 400
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | neventsw: 0
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | pid: 4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:30,369 | INFO     | pgrp: 4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | corecount: 12
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | event service: False
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | sizes: {0: 2348638, 1: 2348837, 8: 2349099, 12: 2349127, 2751: 2374425, 2753: 2383609, 2761: 2383779}
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | --------------------------------------------------
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | 
[2025-10-11 04:15:21] 2025-10-11 04:14:30,370 | INFO     | executing command: ls -lF /var/lib/boinc/slots/16
[2025-10-11 04:15:21] 2025-10-11 04:14:30,393 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,394 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,395 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 04:15:21] 2025-10-11 04:14:30,396 | INFO     | job 6827325781 has completed (purged errors)
[2025-10-11 04:15:21] 2025-10-11 04:14:30,396 | INFO     | overall cleanup function is called
[2025-10-11 04:15:21] 2025-10-11 04:14:31,403 | INFO     | --- collectZombieJob: --- 10, [4054184]
[2025-10-11 04:15:21] 2025-10-11 04:14:31,403 | INFO     | zombie collector waiting for pid 4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:31,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 04:15:21] 2025-10-11 04:14:31,403 | INFO     | collected zombie processes
[2025-10-11 04:15:21] 2025-10-11 04:14:31,403 | INFO     | will attempt to kill all subprocesses of pid=4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:32,252 | INFO     | PID=4046037 has CPU usage=26.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 04:15:21] 2025-10-11 04:14:32,252 | INFO     | .. there are 17 such processes running
[2025-10-11 04:15:21] 2025-10-11 04:14:32,508 | INFO     | process IDs to be killed: [4054184] (in reverse order)
[2025-10-11 04:15:21] 2025-10-11 04:14:32,742 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 04:15:21] 2025-10-11 04:14:32,742 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 04:15:21] 2025-10-11 04:14:32,771 | INFO     | did not find any defunct processes belonging to 4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:32,792 | INFO     | did not find any defunct processes belonging to 4054184
[2025-10-11 04:15:21] 2025-10-11 04:14:32,792 | INFO     | ready for new job
[2025-10-11 04:15:21] 2025-10-11 04:14:32,792 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 04:15:21] 2025-10-11 04:14:32,794 | INFO     | ***************************************
[2025-10-11 04:15:21] 2025-10-11 04:14:32,794 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 04:15:21] 2025-10-11 04:14:32,794 | INFO     | ***************************************
[2025-10-11 04:15:21] 2025-10-11 04:14:32,794 | INFO     | 
[2025-10-11 04:15:21] 2025-10-11 04:14:32,828 | INFO     | architecture information:
[2025-10-11 04:15:21] 2025-10-11 04:14:32,829 | INFO     | executing command: cat /etc/os-release
[2025-10-11 04:15:21] 2025-10-11 04:14:32,845 | INFO     | cat /etc/os-release:
[2025-10-11 04:15:21] NAME="CentOS Linux"
[2025-10-11 04:15:21] VERSION="7 (Core)"
[2025-10-11 04:15:21] ID="centos"
[2025-10-11 04:15:21] ID_LIKE="rhel fedora"
[2025-10-11 04:15:21] VERSION_ID="7"
[2025-10-11 04:15:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 04:15:21] ANSI_COLOR="0;31"
[2025-10-11 04:15:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 04:15:21] HOME_URL="https://www.centos.org/"
[2025-10-11 04:15:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 04:15:21] 
[2025-10-11 04:15:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 04:15:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 04:15:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 04:15:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 04:15:21] 
[2025-10-11 04:15:21] 2025-10-11 04:14:32,845 | INFO     | ***************************************
[2025-10-11 04:15:21] 2025-10-11 04:14:33,347 | INFO     | executing command: df -mP /var/lib/boinc/slots/16
[2025-10-11 04:15:21] 2025-10-11 04:14:33,367 | INFO     | sufficient remaining disk space (1724836216832 B)
[2025-10-11 04:15:21] 2025-10-11 04:14:33,367 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 04:15:21] 2025-10-11 04:14:33,367 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 04:15:21] 2025-10-11 04:14:33,367 | INFO     | update_server=False
[2025-10-11 04:15:21] 2025-10-11 04:14:33,368 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 04:15:21] 2025-10-11 04:14:33,446 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 04:15:21] 2025-10-11 04:14:33,526 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 04:15:21] 2025-10-11 04:14:33,654 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:15:21] 2025-10-11 04:14:33,654 | INFO     | aborting loop
[2025-10-11 04:15:21] 2025-10-11 04:14:34,048 | INFO     | all payload control threads have been joined
[2025-10-11 04:15:21] 2025-10-11 04:14:34,334 | INFO     | all data control threads have been joined
[2025-10-11 04:15:21] 2025-10-11 04:14:34,371 | INFO     | [job] retrieve thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:34,586 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:34,658 | INFO     | [job] job monitor thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:34,745 | INFO     | all job control threads have been joined
[2025-10-11 04:15:21] 2025-10-11 04:14:34,759 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:34,798 | INFO     | [payload] validate_post thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:34,845 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,053 | INFO     | [payload] control thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,334 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 04:15:21] 2025-10-11 04:14:35,338 | INFO     | [data] control thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,408 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,451 | INFO     | [data] copytool_out thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,524 | INFO     | [payload] failed_post thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,750 | INFO     | [job] control thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,806 | INFO     | [data] copytool_in thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:35,854 | INFO     | [job] validate thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:36,338 | INFO     | [job] queue monitor thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:14:37,530 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 04:15:21] 2025-10-11 04:15:03,330 | INFO     | 2784s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 04:15:21] 2025-10-11 04:15:05,311 | INFO     | PID=4046037 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 04:15:21] 2025-10-11 04:15:05,311 | INFO     | .. there are 17 such processes running
[2025-10-11 04:15:21] 2025-10-11 04:15:05,313 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 04:15:21] 2025-10-11 04:15:05,313 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 04:15:21] 2025-10-11 04:15:05,313 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 04:15:21] 2025-10-11 04:15:14,646 | INFO     | [monitor] cgroup control has ended
[2025-10-11 04:15:21] 2025-10-11 04:15:16,384 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140457153849152)>', '<ExcThread(monitor, started 140456864229120)>']
[2025-10-11 04:15:21] 2025-10-11 04:15:17,370 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 04:15:21] 2025-10-11 04:15:17,370 | INFO     | [monitor] control thread has ended
[2025-10-11 04:15:21] 2025-10-11 04:15:21,406 | INFO     | all workflow threads have been joined
[2025-10-11 04:15:21] 2025-10-11 04:15:21,407 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 04:15:21] 2025-10-11 04:15:21,407 | INFO     | traces error code: 0
[2025-10-11 04:15:21] 2025-10-11 04:15:21,407 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 04:15:21] 2025-10-11 04:15:21,573 [wrapper] ==== pilot stdout END ====
[2025-10-11 04:15:21] 2025-10-11 04:15:21,577 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 04:15:21] 2025-10-11 04:15:21,581 [wrapper] pilotpid: 4046037
[2025-10-11 04:15:21] 2025-10-11 04:15:21,584 [wrapper] Pilot exit status: 0
[2025-10-11 04:15:21] 2025-10-11 04:15:21,598 [wrapper] pandaids: 6827325781
[2025-10-11 04:15:21] 2025-10-11 04:15:21,782 [wrapper] cleanup supervisor_pilot  217043 4046038
[2025-10-11 04:15:21] 2025-10-11 04:15:21,785 [wrapper] Test setup, not cleaning
[2025-10-11 04:15:21] 2025-10-11 04:15:21,787 [wrapper] apfmon messages muted
[2025-10-11 04:15:21] 2025-10-11 04:15:21,791 [wrapper] ==== wrapper stdout END ====
[2025-10-11 04:15:21] 2025-10-11 04:15:21,793 [wrapper] ==== wrapper stderr END ====
[2025-10-11 04:15:21]  *** Error codes and diagnostics ***
[2025-10-11 04:15:21]     "exeErrorCode": 0,
[2025-10-11 04:15:21]     "exeErrorDiag": "",
[2025-10-11 04:15:21]     "pilotErrorCode": 0,
[2025-10-11 04:15:21]     "pilotErrorDiag": "",
[2025-10-11 04:15:21]  *** Listing of results directory ***
[2025-10-11 04:15:21] total 385424
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc      5112 Oct  2 19:29 queuedata.json
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc    552446 Oct  2 19:29 pilot3.tar.gz
[2025-10-11 04:15:21] -rwx------ 1 boinc boinc     36292 Oct  2 19:30 runpilot2-wrapper.sh
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc       100 Oct 11 03:27 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 04:15:21] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 03:27 run_atlas
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc       105 Oct 11 03:27 job.xml
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:27 start_atlas.sh
[2025-10-11 04:15:21] drwxrwx--x 2 boinc boinc      4096 Oct 11 03:27 shared
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc    565601 Oct 11 03:27 input.tar.gz
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc      9396 Oct 11 03:27 init_data.xml
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc 213139921 Oct 11 03:27 EVNT.46376901._000916.pool.root.1
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:27 boinc_setup_complete
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc         0 Oct 11 03:27 boinc_lockfile
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc      2515 Oct 11 03:27 pandaJob.out
[2025-10-11 04:15:21] -rw------- 1 boinc boinc    975509 Oct 11 03:28 agis_schedconf.cvmfs.json
[2025-10-11 04:15:21] -rw------- 1 boinc boinc   1560580 Oct 11 03:28 agis_ddmendpoints.agis.ALL.json
[2025-10-11 04:15:21] drwx------ 4 boinc boinc      4096 Oct 11 03:28 pilot3
[2025-10-11 04:15:21] -rw------- 1 boinc boinc 176116809 Oct 11 04:13 HITS.46376905._028726.pool.root.1
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc       530 Oct 11 04:13 boinc_task_state.xml
[2025-10-11 04:15:21] -rw------- 1 boinc boinc      1027 Oct 11 04:14 memory_monitor_summary.json
[2025-10-11 04:15:21] -rw------- 1 boinc boinc    342842 Oct 11 04:14 log.46376905._028726.job.log.tgz.1
[2025-10-11 04:15:21] -rw------- 1 boinc boinc      7738 Oct 11 04:14 heartbeat.json
[2025-10-11 04:15:21] -rw------- 1 boinc boinc        95 Oct 11 04:15 pilot_heartbeat.json
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc        27 Oct 11 04:15 wrapper_checkpoint.txt
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc      8192 Oct 11 04:15 boinc_mmap_file
[2025-10-11 04:15:21] -rw------- 1 boinc boinc      4942 Oct 11 04:15 pilotlog.txt
[2025-10-11 04:15:21] -rw------- 1 boinc boinc    416066 Oct 11 04:15 log.46376905._028726.job.log.1
[2025-10-11 04:15:21] -rw------- 1 boinc boinc       357 Oct 11 04:15 output.list
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc       620 Oct 11 04:15 runtime_log
[2025-10-11 04:15:21] -rw------- 1 boinc boinc    778240 Oct 11 04:15 result.tar.gz
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc      8672 Oct 11 04:15 runtime_log.err
[2025-10-11 04:15:21] -rw------- 1 boinc boinc       643 Oct 11 04:15 ea4NDmYBeO8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGq9LDmK0GZin.diag
[2025-10-11 04:15:21] -rw-r--r-- 1 boinc boinc     22101 Oct 11 04:15 stderr.txt
[2025-10-11 04:15:21] HITS file was successfully produced:
[2025-10-11 04:15:21] -rw------- 1 boinc boinc 176116809 Oct 11 04:13 shared/HITS.pool.root.1
[2025-10-11 04:15:21]  *** Contents of shared directory: ***
[2025-10-11 04:15:21] total 381480
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc     15120 Oct 11 03:27 start_atlas.sh
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc    565601 Oct 11 03:27 input.tar.gz
[2025-10-11 04:15:21] -rw-r--r-- 2 boinc boinc 213139921 Oct 11 03:27 ATLAS.root_0
[2025-10-11 04:15:21] -rw------- 1 boinc boinc 176116809 Oct 11 04:13 HITS.pool.root.1
[2025-10-11 04:15:21] -rw------- 1 boinc boinc    778240 Oct 11 04:15 result.tar.gz
04:15:23 (4041306): run_atlas exited; CPU time 28974.023620
04:15:23 (4041306): called boinc_finish(0)

</stderr_txt>
]]>

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