Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:55:46 (7996): wrapper (7.7.26015): starting
22:55:46 (7996): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 22:55:46] Arguments: --nthreads 8
[2025-10-10 22:55:46] Threads: 8
[2025-10-10 22:55:46] Checking for CVMFS
[2025-10-10 22:55:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 22:55:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 22:55:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 22:55:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 22:55:46] 2.11.2.0 25047 50737 109100 151569 0 59 12872974 20275200 917 130560 0 57950539 99.978 2323800 23633 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 22:55:46] CVMFS is ok
[2025-10-10 22:55:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 22:55:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 22:55:46] Further information can be found at the LHC@home message board.
[2025-10-10 22:55:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 22:55:46] Checking for apptainer binary...
[2025-10-10 22:55:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 22:55:46] Running /usr/bin/apptainer --version
[2025-10-10 22:55:46] apptainer version 1.3.2-1.el7
[2025-10-10 22:55:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 22:55:47] c-205-37.aglt2.org
[2025-10-10 22:55:47] apptainer works
[2025-10-10 22:55:47] Set ATHENA_PROC_NUMBER=8
[2025-10-10 22:55:47] Set ATHENA_CORE_NUMBER=8
[2025-10-10 22:55:47] Starting ATLAS job with PandaID=6837706409
[2025-10-10 22:55:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 00:01:11]  *** The last 200 lines of the pilot log: ***
[2025-10-11 00:01:11]  status_code=0
[2025-10-11 00:01:11]  storage_token=
[2025-10-11 00:01:11]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837706409/log.46676269._042840.job.log.tgz.1
[2025-10-11 00:01:11]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/9e/log.46676269._042840.job.log.tgz.1
[2025-10-11 00:01:11]  workdir=None
[2025-10-11 00:01:11] ]
[2025-10-11 00:01:11] 2025-10-11 04:00:00,599 | INFO     | transferring file log.46676269._042840.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837706409/log.46676269._042840.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-11 00:01:11] 2025-10-11 04:00:00,599 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837706409/log.46676269._042840.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._042840.job
[2025-10-11 00:01:11] 2025-10-11 04:00:00,619 | INFO     | adding to output.list: log.46676269._042840.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3e/9e/log.46676269._042840.job.log.tg
[2025-10-11 00:01:11] 2025-10-11 04:00:00,620 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 00:01:11] 2025-10-11 04:00:00,621 | INFO     | summary of transferred files:
[2025-10-11 00:01:11] 2025-10-11 04:00:00,621 | INFO     |  -- lfn=log.46676269._042840.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 00:01:11] 2025-10-11 04:00:00,621 | INFO     | stage-out finished correctly
[2025-10-11 00:01:11] 2025-10-11 04:00:00,821 | WARNING  | process 18177 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 00:01:11] 2025-10-11 04:00:00,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837706409/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 00:01:11] 2025-10-11 04:00:00,833 | INFO     | time since job start (3841s) is within the limit (172800.0s)
[2025-10-11 00:01:11] 2025-10-11 04:00:00,902 | INFO     | number of running child processes to parent process 18177: 1
[2025-10-11 00:01:11] 2025-10-11 04:00:00,902 | INFO     | maximum number of monitored processes: 6
[2025-10-11 00:01:11] 2025-10-11 04:00:02,204 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 00:01:11] 2025-10-11 04:00:02,838 | INFO     | time since job start (3843s) is within the limit (172800.0s)
[2025-10-11 00:01:11] 2025-10-11 04:00:03,138 | INFO     | job 6837706409 has state=finished
[2025-10-11 00:01:11] 2025-10-11 04:00:03,138 | INFO     | preparing for final server update for job 6837706409 in state='finished'
[2025-10-11 00:01:11] 2025-10-11 04:00:03,139 | INFO     | this job has now completed (state=finished)
[2025-10-11 00:01:11] 2025-10-11 04:00:03,139 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 00:01:11] 2025-10-11 04:00:03,139 | INFO     | log transfer has been attempted: DONE
[2025-10-11 00:01:11] 2025-10-11 04:00:03,139 | INFO     | job 6837706409 has finished - writing final server update
[2025-10-11 00:01:11] 2025-10-11 04:00:03,140 | INFO     | total number of processed events: 400 (read)
[2025-10-11 00:01:11] 2025-10-11 04:00:03,141 | INFO     | executing command: lscpu
[2025-10-11 00:01:11] 2025-10-11 04:00:03,175 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 00:01:11] 2025-10-11 04:00:03,405 | INFO     | monitor loop #289: job 0:6837706409 is in state 'finished'
[2025-10-11 00:01:11] 2025-10-11 04:00:03,405 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 00:01:11] 2025-10-11 04:00:04,844 | INFO     | time since job start (3845s) is within the limit (172800.0s)
[2025-10-11 00:01:11] 2025-10-11 04:00:05,908 | INFO     | monitor loop #290: job 0:6837706409 is in state 'finished'
[2025-10-11 00:01:11] 2025-10-11 04:00:05,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 00:01:11] 2025-10-11 04:00:06,849 | INFO     | time since job start (3847s) is within the limit (172800.0s)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,396 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 00:01:11] 2025-10-11 04:00:07,400 | INFO     | found 16 cores (8 cores per socket, 2 sockets) , CPU MHz: 2012.3287499999997
[2025-10-11 00:01:11] 2025-10-11 04:00:07,404 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837706409/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,405 | INFO     | extracted standard info from prmon json
[2025-10-11 00:01:11] 2025-10-11 04:00:07,405 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 00:01:11] 2025-10-11 04:00:07,405 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 00:01:11] 2025-10-11 04:00:07,406 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 00:01:11] 2025-10-11 04:00:07,406 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 00:01:11] 2025-10-11 04:00:07,408 | INFO     | fitting pss+swap vs Time
[2025-10-11 00:01:11] 2025-10-11 04:00:07,408 | INFO     | sum of square deviations: 54438230.0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | sum of deviations: -5785375816.500001
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | mean x: 1760153367.5
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | mean y: 2601189.3035714286
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | -- intersect: 187061378186.01227
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | intersect: 187061378186.01227
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | chi2: 0.055635767754551445
[2025-10-11 00:01:11] 2025-10-11 04:00:07,409 | INFO     | -- intersect: 187061378186.01227
[2025-10-11 00:01:11] 2025-10-11 04:00:07,410 | INFO     | current memory leak: -106.27 B/s (using 56 data points, chi2=0.06)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,410 | INFO     | could have reported an average CPU frequency of 2162 MHz (6 samples)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,410 | INFO     | ..............................
[2025-10-11 00:01:11] 2025-10-11 04:00:07,410 | INFO     | . Timing measurements:
[2025-10-11 00:01:11] 2025-10-11 04:00:07,410 | INFO     | . get job = 0 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . initial setup = 2 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . payload setup = 5 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . stage-in = 0 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . payload execution = 3815 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . stage-out = 0 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | . log creation = 0 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,411 | INFO     | ..............................
[2025-10-11 00:01:11] 2025-10-11 04:00:07,809 | INFO     | 
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | job summary report
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | --------------------------------------------------
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | PanDA job id: 6837706409
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | task id: 46676269
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | errors: (none)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | pilot state: finished 
[2025-10-11 00:01:11] 2025-10-11 04:00:07,810 | INFO     | transexitcode: 0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | exeerrorcode: 0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | exeerrordiag: 
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | exitcode: 0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | exitmsg: OK
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | cpuconsumptiontime: 27804 s
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | nevents: 400
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | neventsw: 0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | pid: 18177
[2025-10-11 00:01:11] 2025-10-11 04:00:07,811 | INFO     | pgrp: 18177
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | corecount: 8
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | event service: False
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | sizes: {0: 2348857, 5: 2349119, 11: 2349175, 3824: 2375070, 3825: 2375069, 3826: 2384123, 3827: 2384307, 3832: 2384501}
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | --------------------------------------------------
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | 
[2025-10-11 00:01:11] 2025-10-11 04:00:07,812 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 00:01:11] 2025-10-11 04:00:07,835 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,835 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 00:01:11] 2025-10-11 04:00:07,838 | INFO     | job 6837706409 has completed (purged errors)
[2025-10-11 00:01:11] 2025-10-11 04:00:07,838 | INFO     | overall cleanup function is called
[2025-10-11 00:01:11] 2025-10-11 04:00:08,846 | INFO     | --- collectZombieJob: --- 10, [18177]
[2025-10-11 00:01:11] 2025-10-11 04:00:08,846 | INFO     | zombie collector waiting for pid 18177
[2025-10-11 00:01:11] 2025-10-11 04:00:08,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 00:01:11] 2025-10-11 04:00:08,846 | INFO     | collected zombie processes
[2025-10-11 00:01:11] 2025-10-11 04:00:08,846 | INFO     | will attempt to kill all subprocesses of pid=18177
[2025-10-11 00:01:11] 2025-10-11 04:00:08,969 | INFO     | process IDs to be killed: [18177] (in reverse order)
[2025-10-11 00:01:11] 2025-10-11 04:00:09,029 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 00:01:11] 2025-10-11 04:00:09,029 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 00:01:11] 2025-10-11 04:00:09,034 | INFO     | did not find any defunct processes belonging to 18177
[2025-10-11 00:01:11] 2025-10-11 04:00:09,037 | INFO     | did not find any defunct processes belonging to 18177
[2025-10-11 00:01:11] 2025-10-11 04:00:09,038 | INFO     | ready for new job
[2025-10-11 00:01:11] 2025-10-11 04:00:09,038 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 00:01:11] 2025-10-11 04:00:09,040 | INFO     | ***************************************
[2025-10-11 00:01:11] 2025-10-11 04:00:09,040 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 00:01:11] 2025-10-11 04:00:09,040 | INFO     | ***************************************
[2025-10-11 00:01:11] 2025-10-11 04:00:09,040 | INFO     | 
[2025-10-11 00:01:11] 2025-10-11 04:00:09,041 | INFO     | architecture information:
[2025-10-11 00:01:11] 2025-10-11 04:00:09,042 | INFO     | executing command: cat /etc/os-release
[2025-10-11 00:01:11] 2025-10-11 04:00:09,059 | INFO     | cat /etc/os-release:
[2025-10-11 00:01:11] NAME="CentOS Linux"
[2025-10-11 00:01:11] VERSION="7 (Core)"
[2025-10-11 00:01:11] ID="centos"
[2025-10-11 00:01:11] ID_LIKE="rhel fedora"
[2025-10-11 00:01:11] VERSION_ID="7"
[2025-10-11 00:01:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 00:01:11] ANSI_COLOR="0;31"
[2025-10-11 00:01:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 00:01:11] HOME_URL="https://www.centos.org/"
[2025-10-11 00:01:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 00:01:11] 
[2025-10-11 00:01:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 00:01:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 00:01:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 00:01:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 00:01:11] 
[2025-10-11 00:01:11] 2025-10-11 04:00:09,059 | INFO     | ***************************************
[2025-10-11 00:01:11] 2025-10-11 04:00:09,562 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 00:01:11] 2025-10-11 04:00:09,582 | INFO     | sufficient remaining disk space (32857128960 B)
[2025-10-11 00:01:11] 2025-10-11 04:00:09,582 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 00:01:11] 2025-10-11 04:00:09,582 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 00:01:11] 2025-10-11 04:00:09,583 | INFO     | update_server=False
[2025-10-11 00:01:11] 2025-10-11 04:00:09,583 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 00:01:11] 2025-10-11 04:00:09,583 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 00:01:11] 2025-10-11 04:00:09,583 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 00:01:11] 2025-10-11 04:00:09,584 | INFO     | aborting loop
[2025-10-11 00:01:11] 2025-10-11 04:00:09,759 | INFO     | all job control threads have been joined
[2025-10-11 00:01:11] 2025-10-11 04:00:10,504 | INFO     | all payload control threads have been joined
[2025-10-11 00:01:11] 2025-10-11 04:00:10,537 | INFO     | all data control threads have been joined
[2025-10-11 00:01:11] 2025-10-11 04:00:10,588 | INFO     | [job] retrieve thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:10,589 | INFO     | [job] job monitor thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:10,681 | INFO     | [data] copytool_in thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:10,764 | INFO     | [job] control thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:10,769 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:10,910 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,508 | INFO     | [payload] control thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,542 | INFO     | [data] control thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,581 | INFO     | [payload] failed_post thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,585 | INFO     | [data] copytool_out thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,718 | INFO     | [job] validate thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:11,918 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:12,153 | INFO     | [payload] validate_post thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:12,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 00:01:11] 2025-10-11 04:00:12,796 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 00:01:11] 2025-10-11 04:00:13,508 | INFO     | [job] queue monitor thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:16,802 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:19,848 | INFO     | job.realtimelogging is not enabled
[2025-10-11 00:01:11] 2025-10-11 04:00:20,853 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 00:01:11] 2025-10-11 04:00:40,076 | INFO     | PID=11659 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-11 00:01:11] 2025-10-11 04:00:40,076 | INFO     | .. there are 2 such processes running
[2025-10-11 00:01:11] 2025-10-11 04:00:40,076 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 00:01:11] 2025-10-11 04:00:40,076 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 00:01:11] 2025-10-11 04:00:40,076 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 00:01:11] 2025-10-11 04:01:05,578 | INFO     | [monitor] cgroup control has ended
[2025-10-11 00:01:11] 2025-10-11 04:01:06,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071422121792)>', '<ExcThread(monitor, started 140071114086144)>']
[2025-10-11 00:01:11] 2025-10-11 04:01:07,202 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 00:01:11] 2025-10-11 04:01:07,202 | INFO     | [monitor] control thread has ended
[2025-10-11 00:01:11] 2025-10-11 04:01:11,590 | INFO     | all workflow threads have been joined
[2025-10-11 00:01:11] 2025-10-11 04:01:11,590 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 00:01:11] 2025-10-11 04:01:11,590 | INFO     | traces error code: 0
[2025-10-11 00:01:11] 2025-10-11 04:01:11,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 00:01:11] 2025-10-11 04:01:11,692 [wrapper] ==== pilot stdout END ====
[2025-10-11 00:01:11] 2025-10-11 04:01:11,695 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 00:01:11] 2025-10-11 04:01:11,698 [wrapper] pilotpid: 11659
[2025-10-11 00:01:11] 2025-10-11 04:01:11,701 [wrapper] Pilot exit status: 0
[2025-10-11 00:01:11] 2025-10-11 04:01:11,712 [wrapper] pandaids: 6837706409
[2025-10-11 00:01:11] 2025-10-11 04:01:11,741 [wrapper] cleanup supervisor_pilot  9451 11660
[2025-10-11 00:01:11] 2025-10-11 04:01:11,745 [wrapper] Test setup, not cleaning
[2025-10-11 00:01:11] 2025-10-11 04:01:11,748 [wrapper] apfmon messages muted
[2025-10-11 00:01:11] 2025-10-11 04:01:11,751 [wrapper] ==== wrapper stdout END ====
[2025-10-11 00:01:11] 2025-10-11 04:01:11,754 [wrapper] ==== wrapper stderr END ====
[2025-10-11 00:01:11]  *** Error codes and diagnostics ***
[2025-10-11 00:01:11]     "exeErrorCode": 0,
[2025-10-11 00:01:11]     "exeErrorDiag": "",
[2025-10-11 00:01:11]     "pilotErrorCode": 0,
[2025-10-11 00:01:11]     "pilotErrorDiag": "",
[2025-10-11 00:01:11]  *** Listing of results directory ***
[2025-10-11 00:01:11] total 406716
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 14:07 pilot3.tar.gz
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 14:08 queuedata.json
[2025-10-11 00:01:11] -rwx------ 1 boincer umatlas     36292 Oct 10 14:08 runpilot2-wrapper.sh
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas       100 Oct 10 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 00:01:11] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 22:55 run_atlas
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas       105 Oct 10 22:55 job.xml
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas    569681 Oct 10 22:55 input.tar.gz
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas 222168336 Oct 10 22:55 EVNT.46676267._001735.pool.root.1
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 22:55 start_atlas.sh
[2025-10-11 00:01:11] drwxrwx--x 2 boincer umatlas      4096 Oct 10 22:55 shared
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas         0 Oct 10 22:55 boinc_lockfile
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 22:55 pandaJob.out
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas    975509 Oct 10 22:55 agis_schedconf.cvmfs.json
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas   1560580 Oct 10 22:55 agis_ddmendpoints.agis.ALL.json
[2025-10-11 00:01:11] drwx------ 5 boincer umatlas      4096 Oct 10 22:55 pilot3
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas      6135 Oct 10 23:57 init_data.xml
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas 188641015 Oct 10 23:59 HITS.46676269._042840.pool.root.1
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas        95 Oct 10 23:59 pilot_heartbeat.json
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas       529 Oct 10 23:59 boinc_task_state.xml
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas      1047 Oct 10 23:59 memory_monitor_summary.json
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas    304067 Oct 11 00:00 log.46676269._042840.job.log.tgz.1
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas      7845 Oct 11 00:00 heartbeat.json
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas        27 Oct 11 00:00 wrapper_checkpoint.txt
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas      8192 Oct 11 00:00 boinc_mmap_file
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas      4893 Oct 11 00:01 pilotlog.txt
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas    580905 Oct 11 00:01 log.46676269._042840.job.log.1
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas       357 Oct 11 00:01 output.list
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas       620 Oct 11 00:01 runtime_log
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas    901120 Oct 11 00:01 result.tar.gz
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas      8703 Oct 11 00:01 runtime_log.err
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas       657 Oct 11 00:01 fXtNDmpiWR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmO4dNDmaVr0nn.diag
[2025-10-11 00:01:11] -rw-r--r-- 1 boincer umatlas     22074 Oct 11 00:01 stderr.txt
[2025-10-11 00:01:11] HITS file was successfully produced:
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas 188641015 Oct 10 23:59 shared/HITS.pool.root.1
[2025-10-11 00:01:11]  *** Contents of shared directory: ***
[2025-10-11 00:01:11] total 402644
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas    569681 Oct 10 22:55 input.tar.gz
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas 222168336 Oct 10 22:55 ATLAS.root_0
[2025-10-11 00:01:11] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 22:55 start_atlas.sh
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas 188641015 Oct 10 23:59 HITS.pool.root.1
[2025-10-11 00:01:11] -rw------- 1 boincer umatlas    901120 Oct 11 00:01 result.tar.gz
00:01:13 (7996): run_atlas exited; CPU time 27806.166164
00:01:13 (7996): called boinc_finish(0)

</stderr_txt>
]]>

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