Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 13:46:38 (24684): vboxwrapper version 26210
2025-10-11 13:46:38 (24684): BOINC client version: 8.2.4
2025-10-11 13:46:38 (24684): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-10-11 13:46:39 (24684): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 13:46:39 (24684): Create VM. (boinc_46a5be6dd4f4961a, slot#3)
2025-10-11 13:46:39 (24684): Setting Memory Size for VM. (4200MB)
2025-10-11 13:46:40 (24684): Setting CPU Count for VM. (2)
2025-10-11 13:46:40 (24684): Setting Chipset Options for VM.
2025-10-11 13:46:40 (24684): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 13:46:40 (24684): Setting Boot Options for VM.
2025-10-11 13:46:41 (24684): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 13:46:41 (24684): Enabling VM Network Access.
2025-10-11 13:46:41 (24684): Disabling USB Support for VM.
2025-10-11 13:46:42 (24684): Disabling COM Port Support for VM.
2025-10-11 13:46:42 (24684): Disabling LPT Port Support for VM.
2025-10-11 13:46:42 (24684): Disabling Audio Support for VM.
2025-10-11 13:46:43 (24684): Disabling Clipboard Support for VM.
2025-10-11 13:46:43 (24684): Disabling Drag and Drop Support for VM.
2025-10-11 13:46:43 (24684): Adding storage controller(s) to VM.
2025-10-11 13:46:43 (24684): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 13:46:44 (24684): Adding VirtualBox Guest Additions to VM.
2025-10-11 13:46:44 (24684): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 13:46:44 (24684): forwarding host port 52705 to guest port 80
2025-10-11 13:46:45 (24684): Enabling remote desktop for VM.
2025-10-11 13:46:45 (24684): Required extension pack not installed, remote desktop not enabled.
2025-10-11 13:46:45 (24684): Enabling shared directory for VM.
2025-10-11 13:46:45 (24684): Starting VM using VBoxManage interface. (boinc_46a5be6dd4f4961a, slot#3)
2025-10-11 13:46:52 (24684): Successfully started VM. (PID = '18580')
2025-10-11 13:46:52 (24684): Reporting VM Process ID to BOINC.
2025-10-11 13:46:52 (24684): Guest Log: BIOS: VirtualBox 7.0.6
2025-10-11 13:46:52 (24684): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 13:46:52 (24684): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 13:46:52 (24684): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 13:46:52 (24684): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 13:46:52 (24684): Detected: Web Application Enabled (http://localhost:52705)
2025-10-11 13:46:52 (24684): Preference change detected
2025-10-11 13:46:52 (24684): Setting CPU throttle for VM. (100%)
2025-10-11 13:46:52 (24684): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 13:46:54 (24684): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 13:46:54 (24684): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 13:46:57 (24684): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 13:46:57 (24684): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 13:46:57 (24684): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 13:47:02 (24684): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 13:47:02 (24684): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-11 13:47:08 (24684): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000148 main     Log opened 2025-10-11T13:47:07.357360000Z
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000269 main     OS Product: Linux
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000315 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000347 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000376 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000376 main     Process ID: 1273
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.000377 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 13:47:08 (24684): Guest Log: 00:00:00.001160 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 13:47:09 (24684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 13:47:09 (24684): Guest Log: [INFO] Mounting shared directory
2025-10-11 13:47:09 (24684): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 13:47:18 (24684): Guest Log: 00:00:10.008601 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 589 083 578 000ns (GuestNow=1 760 150 838 276 097 000 ns GuestLast=1 760 190 427 359 675 000 ns fSetTimeLastLoop=true )
2025-10-11 13:47:38 (24684): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 13:47:38 (24684): Guest Log: [INFO] Detected branch: prod
2025-10-11 13:47:39 (24684): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 13:47:39 (24684): Guest Log: Copying input files
2025-10-11 13:47:40 (24684): Guest Log: Copied input files into RunAtlas.
2025-10-11 13:47:40 (24684): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 13:47:40 (24684): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 13:47:40 (24684): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 13:47:40 (24684): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 13:48:11 (24684): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 13:48:11 (24684): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 13:48:11 (24684): Guest Log: 2.6.3.0 1552 0 32092 151569 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 13:48:12 (24684): Guest Log: copied the webapp to /var/www
2025-10-11 13:48:12 (24684): Guest Log: ATHENA_PROC_NUMBER=2
2025-10-11 13:48:12 (24684): Guest Log: ATHENA_CORE_NUMBER=2
2025-10-11 13:48:13 (24684): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 13:48:13 (24684): Guest Log:  *** Starting ATLAS job. (PandaID=6837875689 taskID=46676269) ***
2025-10-11 15:26:54 (24684): Status Report: Elapsed Time: '6000.000000'
2025-10-11 15:26:54 (24684): Status Report: CPU Time: '9563.265625'
2025-10-11 17:06:56 (24684): Status Report: Elapsed Time: '12000.000000'
2025-10-11 17:06:56 (24684): Status Report: CPU Time: '21502.984375'
2025-10-11 18:46:58 (24684): Status Report: Elapsed Time: '18000.000000'
2025-10-11 18:46:58 (24684): Status Report: CPU Time: '33434.390625'
2025-10-11 20:27:02 (24684): Status Report: Elapsed Time: '24000.000000'
2025-10-11 20:27:02 (24684): Status Report: CPU Time: '45383.125000'
2025-10-11 21:34:59 (24684): Guest Log:  *** Job finished ***
2025-10-11 21:34:59 (24684): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:23,807 | INFO     | all workflow threads have been joined
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:23,807 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:23,808 | INFO     | traces error code: 0
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:23,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,302 | INFO     | PID=5936 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,302 | INFO     | found 0 job(s) in 20 queues
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,303 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,303 | INFO     | [monitor] control thread has ended
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,432 [wrapper] ==== pilot stdout END ====
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,437 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,443 [wrapper] pilotpid: 5936
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,448 [wrapper] Pilot exit status: 0
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,874 [wrapper] pandaids: 6837875689
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,908 [wrapper] cleanup supervisor_pilot 30460 5937
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,914 [wrapper] Test setup, not cleaning
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,919 [wrapper] apfmon messages muted
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,924 [wrapper] ==== wrapper stdout END ====
2025-10-11 21:34:59 (24684): Guest Log: 2025-10-11 10:34:44,929 [wrapper] ==== wrapper stderr END ====
2025-10-11 21:34:59 (24684): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 21:34:59 (24684): Guest Log:     "exeErrorCode": 0,
2025-10-11 21:34:59 (24684): Guest Log:     "exeErrorDiag": "",
2025-10-11 21:34:59 (24684): Guest Log:     "pilotErrorCode": 0,
2025-10-11 21:34:59 (24684): Guest Log:     "pilotErrorDiag": "",
2025-10-11 21:34:59 (24684): Guest Log:  *** Listing of results directory ***
2025-10-11 21:34:59 (24684): Guest Log: total 199328
2025-10-11 21:34:59 (24684): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 11 00:15 pilot3.tar.gz
2025-10-11 21:34:59 (24684): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 11 00:20 runpilot2-wrapper.sh
2025-10-11 21:34:59 (24684): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 11 00:20 queuedata.json
2025-10-11 21:34:59 (24684): Guest Log: -rwxr-xr-x. 1 atlas atlas      8499 Oct 11 02:47 init_data.xml
2025-10-11 21:34:59 (24684): Guest Log: -rwxr-xr-x. 1 atlas atlas    569679 Oct 11 02:47 input.tar.gz
2025-10-11 21:34:59 (24684): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 02:47 start_atlas.sh
2025-10-11 21:34:59 (24684): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 02:47 EVNT.46676267._001924.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 21:34:59 (24684): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 11 02:48 pandaJob.out
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 02:50 agis_schedconf.cvmfs.json
2025-10-11 21:34:59 (24684): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 02:50 pilot3
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas 191533769 Oct 11 10:33 HITS.46676269._047643.pool.root.1
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas      1020 Oct 11 10:33 memory_monitor_summary.json
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 10:33 pilot_heartbeat.json
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 10:33 agis_ddmendpoints.agis.ALL.json
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas    547800 Oct 11 10:33 log.46676269._047643.job.log.tgz.1
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas      7784 Oct 11 10:34 heartbeat.json
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas       744 Oct 11 10:34 pilotlog.txt
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas   3821990 Oct 11 10:34 log.46676269._047643.job.log.1
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 10:34 output.list
2025-10-11 21:34:59 (24684): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 10:34 runtime_log
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas   4392960 Oct 11 10:34 result.tar.gz
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas       666 Oct 11 10:34 Zf3KDmhWcR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmspQMDmhSJqDo.diag
2025-10-11 21:34:59 (24684): Guest Log: -rw-r--r--. 1 atlas atlas      8664 Oct 11 10:34 runtime_log.err
2025-10-11 21:34:59 (24684): Guest Log: Looking for outputfile HITS.46676269._047643.pool.root.1
2025-10-11 21:34:59 (24684): Guest Log: HITS file was successfully produced
2025-10-11 21:34:59 (24684): Guest Log: -rw-------. 1 atlas atlas 191533769 Oct 11 10:33 /home/atlas/RunAtlas/HITS.46676269._047643.pool.root.1
2025-10-11 21:35:00 (24684): Guest Log: Successfully finished the ATLAS job!
2025-10-11 21:35:00 (24684): Guest Log: Copying the results back to the shared directory!
2025-10-11 21:35:00 (24684): Guest Log:  *** Contents of shared directory: ***
2025-10-11 21:35:01 (24684): Guest Log: total 405804
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root 219007916 Oct 11 02:46 ATLAS.root_0
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root 191533769 Oct 11  2025 HITS.pool.root.1
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root      8499 Oct 11 02:46 init_data.xml
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root    569679 Oct 11 02:43 input.tar.gz
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root   4392960 Oct 11  2025 result.tar.gz
2025-10-11 21:35:01 (24684): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 11 02:43 start_atlas.sh
2025-10-11 21:35:01 (24684): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 21:35:01 (24684): VM Completion File Detected.
2025-10-11 21:35:01 (24684): Powering off VM.
2025-10-11 21:35:02 (24684): Successfully stopped VM.
2025-10-11 21:35:02 (24684): Deregistering VM. (boinc_46a5be6dd4f4961a, slot#3)
2025-10-11 21:35:02 (24684): Removing network bandwidth throttle group from VM.
2025-10-11 21:35:02 (24684): Removing VM from VirtualBox.
2025-10-11 21:35:07 (24684): called boinc_finish(0)

</stderr_txt>
]]>

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