Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:03:43 (16286): wrapper (7.7.26015): starting
22:03:43 (16286): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 22:03:43] Arguments: --nthreads 12
[2025-10-10 22:03:43] Threads: 12
[2025-10-10 22:03:43] Checking for CVMFS
[2025-10-10 22:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 22:03:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 22:03:44] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 22:03:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 22:03:44] 2.11.2.0 3081 220770 101176 151567 2 57 12931896 20275200 1 130560 1 106541325 99.983 13088199 12428 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 22:03:44] CVMFS is ok
[2025-10-10 22:03:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 22:03:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 22:03:44] Further information can be found at the LHC@home message board.
[2025-10-10 22:03:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 22:03:44] Checking for apptainer binary...
[2025-10-10 22:03:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 22:03:44] Running /usr/bin/apptainer --version
[2025-10-10 22:03:44] apptainer version 1.3.2-1.el7
[2025-10-10 22:03:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 22:03:45] c-205-29.aglt2.org
[2025-10-10 22:03:45] apptainer works
[2025-10-10 22:03:45] Set ATHENA_PROC_NUMBER=12
[2025-10-10 22:03:45] Set ATHENA_CORE_NUMBER=12
[2025-10-10 22:03:45] Starting ATLAS job with PandaID=6827235355
[2025-10-10 22:03:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 23:08:12]  *** The last 200 lines of the pilot log: ***
[2025-10-10 23:08:12]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 23:08:12]  replicas=None
[2025-10-10 23:08:12]  scope=mc23_13p6TeV
[2025-10-10 23:08:12]  status=None
[2025-10-10 23:08:12]  status_code=0
[2025-10-10 23:08:12]  storage_token=
[2025-10-10 23:08:12]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6827235355/log.46376905._028081.job.log.tgz.1
[2025-10-10 23:08:12]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/2a/log.46376905._028081.job.log.tgz.1
[2025-10-10 23:08:12]  workdir=None
[2025-10-10 23:08:12] ]
[2025-10-10 23:08:12] 2025-10-11 03:06:59,805 | INFO     | transferring file log.46376905._028081.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6827235355/log.46376905._028081.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 23:08:12] 2025-10-11 03:06:59,805 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6827235355/log.46376905._028081.job.log.tgz.1 /tmp/boinchome/slots/0/log.46376905._028081.job
[2025-10-10 23:08:12] 2025-10-11 03:06:59,827 | INFO     | adding to output.list: log.46376905._028081.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7f/2a/log.46376905._028081.job.log.tg
[2025-10-10 23:08:12] 2025-10-11 03:06:59,828 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 23:08:12] 2025-10-11 03:06:59,828 | INFO     | summary of transferred files:
[2025-10-10 23:08:12] 2025-10-11 03:06:59,828 | INFO     |  -- lfn=log.46376905._028081.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 23:08:12] 2025-10-11 03:06:59,829 | INFO     | stage-out finished correctly
[2025-10-10 23:08:12] 2025-10-11 03:07:00,516 | INFO     | monitor loop #284: job 0:6827235355 is in state 'finished'
[2025-10-10 23:08:12] 2025-10-11 03:07:00,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:08:12] 2025-10-11 03:07:01,751 | INFO     | time since job start (3781s) is within the limit (172800.0s)
[2025-10-10 23:08:12] 2025-10-11 03:07:02,026 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 23:08:12] 2025-10-11 03:07:02,107 | INFO     | job 6827235355 has state=finished
[2025-10-10 23:08:12] 2025-10-11 03:07:02,108 | INFO     | preparing for final server update for job 6827235355 in state='finished'
[2025-10-10 23:08:12] 2025-10-11 03:07:02,108 | INFO     | this job has now completed (state=finished)
[2025-10-10 23:08:12] 2025-10-11 03:07:02,109 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 23:08:12] 2025-10-11 03:07:02,109 | INFO     | log transfer has been attempted: DONE
[2025-10-10 23:08:12] 2025-10-11 03:07:02,109 | INFO     | job 6827235355 has finished - writing final server update
[2025-10-10 23:08:12] 2025-10-11 03:07:02,109 | INFO     | total number of processed events: 400 (read)
[2025-10-10 23:08:12] 2025-10-11 03:07:02,110 | INFO     | executing command: lscpu
[2025-10-10 23:08:12] 2025-10-11 03:07:02,136 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 23:08:12] 2025-10-11 03:07:03,018 | INFO     | monitor loop #285: job 0:6827235355 is in state 'finished'
[2025-10-10 23:08:12] 2025-10-11 03:07:03,019 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:08:12] 2025-10-11 03:07:03,757 | INFO     | time since job start (3783s) is within the limit (172800.0s)
[2025-10-10 23:08:12] 2025-10-11 03:07:05,521 | INFO     | monitor loop #286: job 0:6827235355 is in state 'finished'
[2025-10-10 23:08:12] 2025-10-11 03:07:05,521 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:08:12] 2025-10-11 03:07:05,763 | INFO     | time since job start (3785s) is within the limit (172800.0s)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,824 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 23:08:12] 2025-10-11 03:07:06,828 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.8333333333333
[2025-10-10 23:08:12] 2025-10-11 03:07:06,831 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6827235355/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,831 | INFO     | extracted standard info from prmon json
[2025-10-10 23:08:12] 2025-10-11 03:07:06,832 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 23:08:12] 2025-10-11 03:07:06,832 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 23:08:12] 2025-10-11 03:07:06,832 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 23:08:12] 2025-10-11 03:07:06,832 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 23:08:12] 2025-10-11 03:07:06,834 | INFO     | fitting pss+swap vs Time
[2025-10-10 23:08:12] 2025-10-11 03:07:06,834 | INFO     | sum of square deviations: 51573060.0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | sum of deviations: -366699670.0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | mean x: 1760150221.0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | mean y: 2681394.327272727
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | -- intersect: 12517868687.676302
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | intersect: 12517868687.676302
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | chi2: 0.002047280864583657
[2025-10-10 23:08:12] 2025-10-11 03:07:06,835 | INFO     | -- intersect: 12517868687.676302
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | current memory leak: -7.11 B/s (using 55 data points, chi2=0.00)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | could have reported an average CPU frequency of 1925 MHz (6 samples)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | ..............................
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | . Timing measurements:
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | . get job = 0 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | . initial setup = 2 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,836 | INFO     | . payload setup = 7 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,837 | INFO     | . stage-in = 0 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,837 | INFO     | . payload execution = 3751 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,837 | INFO     | . stage-out = 0 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,837 | INFO     | . log creation = 0 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,837 | INFO     | ..............................
[2025-10-10 23:08:12] 2025-10-11 03:07:06,919 | INFO     | 
[2025-10-10 23:08:12] 2025-10-11 03:07:06,919 | INFO     | job summary report
[2025-10-10 23:08:12] 2025-10-11 03:07:06,919 | INFO     | --------------------------------------------------
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | PanDA job id: 6827235355
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | task id: 46376905
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | errors: (none)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | pilot state: finished 
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | transexitcode: 0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | exeerrorcode: 0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | exeerrordiag: 
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | exitcode: 0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,920 | INFO     | exitmsg: OK
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | cpuconsumptiontime: 40506 s
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | nevents: 400
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | neventsw: 0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | pid: 26397
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | pgrp: 26397
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | corecount: 12
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | event service: False
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | sizes: {0: 2348643, 1: 2348842, 5: 2349104, 11: 2349160, 3761: 2374884, 3762: 2374883, 3763: 2384065, 3765: 2384121, 3770: 2384315}
[2025-10-10 23:08:12] 2025-10-11 03:07:06,921 | INFO     | --------------------------------------------------
[2025-10-10 23:08:12] 2025-10-11 03:07:06,922 | INFO     | 
[2025-10-10 23:08:12] 2025-10-11 03:07:06,922 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 23:08:12] 2025-10-11 03:07:06,945 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,945 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,945 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,946 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,947 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,948 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,948 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,948 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,948 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,948 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 23:08:12] 2025-10-11 03:07:06,949 | INFO     | job 6827235355 has completed (purged errors)
[2025-10-10 23:08:12] 2025-10-11 03:07:06,949 | INFO     | overall cleanup function is called
[2025-10-10 23:08:12] 2025-10-11 03:07:07,954 | INFO     | --- collectZombieJob: --- 10, [26397]
[2025-10-10 23:08:12] 2025-10-11 03:07:07,954 | INFO     | zombie collector waiting for pid 26397
[2025-10-10 23:08:12] 2025-10-11 03:07:07,955 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 23:08:12] 2025-10-11 03:07:07,955 | INFO     | collected zombie processes
[2025-10-10 23:08:12] 2025-10-11 03:07:07,955 | INFO     | will attempt to kill all subprocesses of pid=26397
[2025-10-10 23:08:12] 2025-10-11 03:07:08,047 | INFO     | process IDs to be killed: [26397] (in reverse order)
[2025-10-10 23:08:12] 2025-10-11 03:07:08,099 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 23:08:12] 2025-10-11 03:07:08,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 23:08:12] 2025-10-11 03:07:08,103 | INFO     | did not find any defunct processes belonging to 26397
[2025-10-10 23:08:12] 2025-10-11 03:07:08,106 | INFO     | did not find any defunct processes belonging to 26397
[2025-10-10 23:08:12] 2025-10-11 03:07:08,106 | INFO     | ready for new job
[2025-10-10 23:08:12] 2025-10-11 03:07:08,106 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 23:08:12] 2025-10-11 03:07:08,108 | INFO     | ***************************************
[2025-10-10 23:08:12] 2025-10-11 03:07:08,108 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 23:08:12] 2025-10-11 03:07:08,108 | INFO     | ***************************************
[2025-10-10 23:08:12] 2025-10-11 03:07:08,108 | INFO     | 
[2025-10-10 23:08:12] 2025-10-11 03:07:08,109 | INFO     | architecture information:
[2025-10-10 23:08:12] 2025-10-11 03:07:08,109 | INFO     | executing command: cat /etc/os-release
[2025-10-10 23:08:12] 2025-10-11 03:07:08,125 | INFO     | cat /etc/os-release:
[2025-10-10 23:08:12] NAME="CentOS Linux"
[2025-10-10 23:08:12] VERSION="7 (Core)"
[2025-10-10 23:08:12] ID="centos"
[2025-10-10 23:08:12] ID_LIKE="rhel fedora"
[2025-10-10 23:08:12] VERSION_ID="7"
[2025-10-10 23:08:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 23:08:12] ANSI_COLOR="0;31"
[2025-10-10 23:08:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 23:08:12] HOME_URL="https://www.centos.org/"
[2025-10-10 23:08:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 23:08:12] 
[2025-10-10 23:08:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 23:08:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 23:08:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 23:08:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 23:08:12] 
[2025-10-10 23:08:12] 2025-10-11 03:07:08,125 | INFO     | ***************************************
[2025-10-10 23:08:12] 2025-10-11 03:07:08,628 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 23:08:12] 2025-10-11 03:07:08,645 | INFO     | sufficient remaining disk space (29391585280 B)
[2025-10-10 23:08:12] 2025-10-11 03:07:08,645 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 23:08:12] 2025-10-11 03:07:08,645 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 23:08:12] 2025-10-11 03:07:08,645 | INFO     | update_server=False
[2025-10-10 23:08:12] 2025-10-11 03:07:08,646 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 23:08:12] 2025-10-11 03:07:08,646 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:08:12] 2025-10-11 03:07:08,646 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 23:08:12] 2025-10-11 03:07:08,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 23:08:12] 2025-10-11 03:07:08,735 | INFO     | all data control threads have been joined
[2025-10-10 23:08:12] 2025-10-11 03:07:09,028 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:08:12] 2025-10-11 03:07:09,028 | INFO     | aborting loop
[2025-10-10 23:08:12] 2025-10-11 03:07:09,646 | INFO     | [job] retrieve thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:09,651 | INFO     | [job] queue monitor thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:09,706 | INFO     | all payload control threads have been joined
[2025-10-10 23:08:12] 2025-10-11 03:07:09,739 | INFO     | [data] control thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,030 | INFO     | [job] job monitor thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,088 | INFO     | all job control threads have been joined
[2025-10-10 23:08:12] 2025-10-11 03:07:10,103 | INFO     | [payload] failed_post thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,227 | INFO     | [job] validate thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,402 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,652 | INFO     | [data] copytool_out thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,653 | INFO     | [payload] validate_post thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,712 | INFO     | [payload] control thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,907 | INFO     | [data] copytool_in thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,910 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:10,981 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:11,091 | INFO     | [job] control thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:12,653 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:19,207 | INFO     | job.realtimelogging is not enabled
[2025-10-10 23:08:12] 2025-10-11 03:07:20,212 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 23:08:12] 2025-10-11 03:07:38,969 | INFO     | PID=19978 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 23:08:12] 2025-10-11 03:07:38,969 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 23:08:12] 2025-10-11 03:07:38,969 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 23:08:12] 2025-10-11 03:07:38,969 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 23:08:12] 2025-10-11 03:08:05,961 | INFO     | [monitor] cgroup control has ended
[2025-10-10 23:08:12] 2025-10-11 03:08:06,966 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139720638375744)>', '<ExcThread(monitor, started 139719849539328)>']
[2025-10-10 23:08:12] 2025-10-11 03:08:07,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 23:08:12] 2025-10-11 03:08:07,099 | INFO     | [monitor] control thread has ended
[2025-10-10 23:08:12] 2025-10-11 03:08:11,992 | INFO     | all workflow threads have been joined
[2025-10-10 23:08:12] 2025-10-11 03:08:11,992 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 23:08:12] 2025-10-11 03:08:11,992 | INFO     | traces error code: 0
[2025-10-10 23:08:12] 2025-10-11 03:08:11,993 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 23:08:12] 2025-10-11 03:08:12,091 [wrapper] ==== pilot stdout END ====
[2025-10-10 23:08:12] 2025-10-11 03:08:12,095 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 23:08:12] 2025-10-11 03:08:12,099 [wrapper] pilotpid: 19978
[2025-10-10 23:08:12] 2025-10-11 03:08:12,103 [wrapper] Pilot exit status: 0
[2025-10-10 23:08:12] 2025-10-11 03:08:12,118 [wrapper] pandaids: 6827235355
[2025-10-10 23:08:12] 2025-10-11 03:08:12,165 [wrapper] cleanup supervisor_pilot 28263 19979
[2025-10-10 23:08:12] 2025-10-11 03:08:12,170 [wrapper] Test setup, not cleaning
[2025-10-10 23:08:12] 2025-10-11 03:08:12,174 [wrapper] apfmon messages muted
[2025-10-10 23:08:12] 2025-10-11 03:08:12,178 [wrapper] ==== wrapper stdout END ====
[2025-10-10 23:08:12] 2025-10-11 03:08:12,182 [wrapper] ==== wrapper stderr END ====
[2025-10-10 23:08:12]  *** Error codes and diagnostics ***
[2025-10-10 23:08:12]     "exeErrorCode": 0,
[2025-10-10 23:08:12]     "exeErrorDiag": "",
[2025-10-10 23:08:12]     "pilotErrorCode": 0,
[2025-10-10 23:08:12]     "pilotErrorDiag": "",
[2025-10-10 23:08:12]  *** Listing of results directory ***
[2025-10-10 23:08:12] total 390976
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas      5112 Oct  2 14:56 queuedata.json
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas    552446 Oct  2 14:56 pilot3.tar.gz
[2025-10-10 23:08:12] -rwx------ 1 boincer umatlas     36292 Oct  2 14:57 runpilot2-wrapper.sh
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas       100 Oct 10 22:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 23:08:12] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 22:03 run_atlas
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas       105 Oct 10 22:03 job.xml
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas 215341980 Oct 10 22:03 EVNT.46376901._000890.pool.root.1
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 22:03 start_atlas.sh
[2025-10-10 23:08:12] drwxrwx--x 2 boincer umatlas      4096 Oct 10 22:03 shared
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas    565600 Oct 10 22:03 input.tar.gz
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas         0 Oct 10 22:03 boinc_lockfile
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas      2518 Oct 10 22:03 pandaJob.out
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas    975517 Oct 10 22:03 agis_schedconf.cvmfs.json
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas   1560580 Oct 10 22:03 agis_ddmendpoints.agis.ALL.json
[2025-10-10 23:08:12] drwx------ 4 boincer umatlas      4096 Oct 10 22:04 pilot3
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas      5953 Oct 10 23:00 init_data.xml
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas 179287525 Oct 10 23:06 HITS.46376905._028081.pool.root.1
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas       529 Oct 10 23:06 boinc_task_state.xml
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas        95 Oct 10 23:06 pilot_heartbeat.json
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas      1061 Oct 10 23:06 memory_monitor_summary.json
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas    366443 Oct 10 23:06 log.46376905._028081.job.log.tgz.1
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas      7849 Oct 10 23:07 heartbeat.json
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 23:07 boinc_mmap_file
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas        27 Oct 10 23:07 wrapper_checkpoint.txt
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas      4818 Oct 10 23:08 pilotlog.txt
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas    556524 Oct 10 23:08 log.46376905._028081.job.log.1
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas       357 Oct 10 23:08 output.list
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas       620 Oct 10 23:08 runtime_log
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas    942080 Oct 10 23:08 result.tar.gz
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 23:08 runtime_log.err
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas       659 Oct 10 23:08 5DKODmOfdO8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmxKFNDmhoxl8m.diag
[2025-10-10 23:08:12] -rw-r--r-- 1 boincer umatlas     21874 Oct 10 23:08 stderr.txt
[2025-10-10 23:08:12] HITS file was successfully produced:
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas 179287525 Oct 10 23:06 shared/HITS.pool.root.1
[2025-10-10 23:08:12]  *** Contents of shared directory: ***
[2025-10-10 23:08:12] total 386876
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas 215341980 Oct 10 22:03 ATLAS.root_0
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 22:03 start_atlas.sh
[2025-10-10 23:08:12] -rw-r--r-- 2 boincer umatlas    565600 Oct 10 22:03 input.tar.gz
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas 179287525 Oct 10 23:06 HITS.pool.root.1
[2025-10-10 23:08:12] -rw------- 1 boincer umatlas    942080 Oct 10 23:08 result.tar.gz
23:08:14 (16286): run_atlas exited; CPU time 40483.598202
23:08:14 (16286): called boinc_finish(0)

</stderr_txt>
]]>

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