Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:04:56 (3693938): wrapper (7.7.26015): starting
16:04:56 (3693938): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 16:04:56] Arguments: --nthreads 12
[2025-10-11 16:04:56] Threads: 12
[2025-10-11 16:04:56] Checking for CVMFS
[2025-10-11 16:04:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 16:04:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 16:04:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 16:04:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 16:04:56] 2.13.2.0 8705 31930 120324 151585 0 188 39638984 46080001 922 130560 0 54095727 99.997 1028107 782 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-11 16:04:56] CVMFS is ok
[2025-10-11 16:04:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 16:04:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 16:04:56] Further information can be found at the LHC@home message board.
[2025-10-11 16:04:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 16:04:56] Checking for apptainer binary...
[2025-10-11 16:04:56] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 16:04:56] Running /usr/bin/apptainer --version
[2025-10-11 16:04:56] apptainer version 1.4.2-1.el9
[2025-10-11 16:04:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 16:04:57] gpu01.farm.particle.cz
[2025-10-11 16:04:57] apptainer works
[2025-10-11 16:04:57] Set ATHENA_PROC_NUMBER=12
[2025-10-11 16:04:57] Set ATHENA_CORE_NUMBER=12
[2025-10-11 16:04:57] Starting ATLAS job with PandaID=6829591054
[2025-10-11 16:04:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 16:42:15]  *** The last 200 lines of the pilot log: ***
[2025-10-11 16:42:15]  protocol_id=None
[2025-10-11 16:42:15]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-11 16:42:15]  replicas=None
[2025-10-11 16:42:15]  scope=mc23_13p6TeV
[2025-10-11 16:42:15]  status=None
[2025-10-11 16:42:15]  status_code=0
[2025-10-11 16:42:15]  storage_token=
[2025-10-11 16:42:15]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6829591054/log.46376905._058805.job.log.tgz.1
[2025-10-11 16:42:15]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/f2/log.46376905._058805.job.log.tgz.1
[2025-10-11 16:42:15]  workdir=None
[2025-10-11 16:42:15] ]
[2025-10-11 16:42:15] 2025-10-11 14:41:36,881 | INFO     | transferring file log.46376905._058805.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6829591054/log.46376905._058805.job.log.tgz.1 to /var/lib/boinc/slots/
[2025-10-11 16:42:15] 2025-10-11 14:41:36,881 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6829591054/log.46376905._058805.job.log.tgz.1 /var/lib/boinc/slots/2/log.46376905._058805.job
[2025-10-11 16:42:15] 2025-10-11 14:41:36,895 | INFO     | adding to output.list: log.46376905._058805.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/7a/f2/log.46376905._058805.job.log.tg
[2025-10-11 16:42:15] 2025-10-11 14:41:36,895 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 16:42:15] 2025-10-11 14:41:36,895 | INFO     | summary of transferred files:
[2025-10-11 16:42:15] 2025-10-11 14:41:36,896 | INFO     |  -- lfn=log.46376905._058805.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 16:42:15] 2025-10-11 14:41:36,896 | INFO     | stage-out finished correctly
[2025-10-11 16:42:15] 2025-10-11 14:41:36,947 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 16:42:15] 2025-10-11 14:41:37,621 | INFO     | time since job start (2192s) is within the limit (172800.0s)
[2025-10-11 16:42:15] 2025-10-11 14:41:37,764 | INFO     | monitor loop #170: job 0:6829591054 is in state 'finished'
[2025-10-11 16:42:15] 2025-10-11 14:41:37,765 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:42:15] 2025-10-11 14:41:38,819 | INFO     | job 6829591054 has state=finished
[2025-10-11 16:42:15] 2025-10-11 14:41:38,822 | INFO     | preparing for final server update for job 6829591054 in state='finished'
[2025-10-11 16:42:15] 2025-10-11 14:41:39,292 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 16:42:15] 2025-10-11 14:41:39,293 | INFO     | this job has now completed (state=finished)
[2025-10-11 16:42:15] 2025-10-11 14:41:39,293 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 16:42:15] 2025-10-11 14:41:39,293 | INFO     | log transfer has been attempted: DONE
[2025-10-11 16:42:15] 2025-10-11 14:41:39,293 | INFO     | job 6829591054 has finished - writing final server update
[2025-10-11 16:42:15] 2025-10-11 14:41:39,293 | INFO     | total number of processed events: 400 (read)
[2025-10-11 16:42:15] 2025-10-11 14:41:39,294 | INFO     | executing command: lscpu
[2025-10-11 16:42:15] 2025-10-11 14:41:39,319 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 16:42:15] 2025-10-11 14:41:39,627 | INFO     | time since job start (2194s) is within the limit (172800.0s)
[2025-10-11 16:42:15] 2025-10-11 14:41:40,268 | INFO     | monitor loop #171: job 0:6829591054 is in state 'finished'
[2025-10-11 16:42:15] 2025-10-11 14:41:40,268 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 16:42:15] 2025-10-11 14:41:41,632 | INFO     | time since job start (2196s) is within the limit (172800.0s)
[2025-10-11 16:42:15] 2025-10-11 14:41:41,955 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 16:42:15] 2025-10-11 14:41:41,958 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 3224.1798437499997
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6829591054/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | INFO     | extracted standard info from prmon json
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 16:42:15] 2025-10-11 14:41:41,962 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | fitting pss+swap vs Time
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | sum of square deviations: 7553630.0
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | sum of deviations: -796817502.0000001
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | mean x: 1760192687.0
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | mean y: 2739577.3448275863
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | -- intersect: 185681987818.78745
[2025-10-11 16:42:15] 2025-10-11 14:41:41,963 | INFO     | intersect: 185681987818.78745
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | chi2: 0.03905217964017135
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | -- intersect: 185681987818.78745
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | current memory leak: -105.49 B/s (using 29 data points, chi2=0.04)
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | could have reported an average CPU frequency of 3211 MHz (5 samples)
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | ..............................
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . Timing measurements:
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . get job = 0 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . initial setup = 2 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . payload setup = 3 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . stage-in = 0 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . payload execution = 2167 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . stage-out = 0 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | . log creation = 0 s
[2025-10-11 16:42:15] 2025-10-11 14:41:41,964 | INFO     | ..............................
[2025-10-11 16:42:15] 2025-10-11 14:41:42,373 | INFO     | 
[2025-10-11 16:42:15] 2025-10-11 14:41:42,373 | INFO     | job summary report
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | --------------------------------------------------
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | PanDA job id: 6829591054
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | task id: 46376905
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | errors: (none)
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | pilot state: finished 
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | transexitcode: 0
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | exeerrorcode: 0
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | exeerrordiag: 
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | exitcode: 0
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | exitmsg: OK
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | cpuconsumptiontime: 23500 s
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | nevents: 400
[2025-10-11 16:42:15] 2025-10-11 14:41:42,374 | INFO     | neventsw: 0
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | pid: 3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | pgrp: 3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | corecount: 12
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | event service: False
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | sizes: {0: 2348589, 1: 2348844, 4: 2349106, 11: 2349134, 2174: 2374279, 2176: 2383461, 2181: 2383631}
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | --------------------------------------------------
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | 
[2025-10-11 16:42:15] 2025-10-11 14:41:42,375 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2025-10-11 16:42:15] 2025-10-11 14:41:42,392 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | job 6829591054 has completed (purged errors)
[2025-10-11 16:42:15] 2025-10-11 14:41:42,394 | INFO     | overall cleanup function is called
[2025-10-11 16:42:15] 2025-10-11 14:41:43,402 | INFO     | --- collectZombieJob: --- 10, [3706090]
[2025-10-11 16:42:15] 2025-10-11 14:41:43,403 | INFO     | zombie collector waiting for pid 3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:43,403 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 16:42:15] 2025-10-11 14:41:43,403 | INFO     | collected zombie processes
[2025-10-11 16:42:15] 2025-10-11 14:41:43,403 | INFO     | will attempt to kill all subprocesses of pid=3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:43,494 | INFO     | process IDs to be killed: [3706090] (in reverse order)
[2025-10-11 16:42:15] 2025-10-11 14:41:43,532 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 16:42:15] 2025-10-11 14:41:43,532 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 16:42:15] 2025-10-11 14:41:43,536 | INFO     | did not find any defunct processes belonging to 3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:43,539 | INFO     | did not find any defunct processes belonging to 3706090
[2025-10-11 16:42:15] 2025-10-11 14:41:43,539 | INFO     | ready for new job
[2025-10-11 16:42:15] 2025-10-11 14:41:43,539 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 16:42:15] 2025-10-11 14:41:43,540 | INFO     | ***************************************
[2025-10-11 16:42:15] 2025-10-11 14:41:43,540 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-11 16:42:15] 2025-10-11 14:41:43,540 | INFO     | ***************************************
[2025-10-11 16:42:15] 2025-10-11 14:41:43,540 | INFO     | 
[2025-10-11 16:42:15] 2025-10-11 14:41:43,541 | INFO     | architecture information:
[2025-10-11 16:42:15] 2025-10-11 14:41:43,541 | INFO     | executing command: cat /etc/os-release
[2025-10-11 16:42:15] 2025-10-11 14:41:43,553 | INFO     | cat /etc/os-release:
[2025-10-11 16:42:15] NAME="CentOS Linux"
[2025-10-11 16:42:15] VERSION="7 (Core)"
[2025-10-11 16:42:15] ID="centos"
[2025-10-11 16:42:15] ID_LIKE="rhel fedora"
[2025-10-11 16:42:15] VERSION_ID="7"
[2025-10-11 16:42:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 16:42:15] ANSI_COLOR="0;31"
[2025-10-11 16:42:15] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 16:42:15] HOME_URL="https://www.centos.org/"
[2025-10-11 16:42:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 16:42:15] 
[2025-10-11 16:42:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 16:42:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 16:42:15] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 16:42:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 16:42:15] 
[2025-10-11 16:42:15] 2025-10-11 14:41:43,553 | INFO     | ***************************************
[2025-10-11 16:42:15] 2025-10-11 14:41:44,056 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | INFO     | sufficient remaining disk space (51861520384 B)
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | INFO     | update_server=False
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:42:15] 2025-10-11 14:41:44,070 | INFO     | aborting loop
[2025-10-11 16:42:15] 2025-10-11 14:41:44,261 | INFO     | all data control threads have been joined
[2025-10-11 16:42:15] 2025-10-11 14:41:44,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 16:42:15] 2025-10-11 14:41:45,075 | INFO     | [job] retrieve thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,076 | INFO     | [job] job monitor thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,184 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,190 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,197 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,266 | INFO     | [data] control thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,357 | INFO     | all payload control threads have been joined
[2025-10-11 16:42:15] 2025-10-11 14:41:45,397 | INFO     | all job control threads have been joined
[2025-10-11 16:42:15] 2025-10-11 14:41:45,564 | INFO     | [payload] failed_post thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:45,745 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,013 | INFO     | [payload] validate_post thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,362 | INFO     | [payload] control thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,402 | INFO     | [job] control thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,516 | INFO     | [job] validate thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,529 | INFO     | [data] copytool_in thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:46,964 | INFO     | [data] copytool_out thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:47,027 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 16:42:15] 2025-10-11 14:41:47,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 16:42:15] 2025-10-11 14:41:48,032 | INFO     | [job] queue monitor thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:41:51,513 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 16:42:15] 2025-10-11 14:42:08,226 | INFO     | [monitor] cgroup control has ended
[2025-10-11 16:42:15] 2025-10-11 14:42:09,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140632793626432)>', '<ExcThread(monitor, started 140632303585024)>']
[2025-10-11 16:42:15] 2025-10-11 14:42:14,817 | INFO     | PID=3698330 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 16:42:15] 2025-10-11 14:42:14,817 | INFO     | .. there are 2 such processes running
[2025-10-11 16:42:15] 2025-10-11 14:42:14,817 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 16:42:15] 2025-10-11 14:42:14,818 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 16:42:15] 2025-10-11 14:42:14,818 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 16:42:15] 2025-10-11 14:42:14,818 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 16:42:15] 2025-10-11 14:42:14,818 | INFO     | [monitor] control thread has ended
[2025-10-11 16:42:15] 2025-10-11 14:42:14,912 | INFO     | all workflow threads have been joined
[2025-10-11 16:42:15] 2025-10-11 14:42:14,912 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 16:42:15] 2025-10-11 14:42:14,912 | INFO     | traces error code: 0
[2025-10-11 16:42:15] 2025-10-11 14:42:14,913 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 16:42:15] 2025-10-11 14:42:14,980 [wrapper] ==== pilot stdout END ====
[2025-10-11 16:42:15] 2025-10-11 14:42:14,982 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 16:42:15] 2025-10-11 14:42:14,984 [wrapper] pilotpid: 3698330
[2025-10-11 16:42:15] 2025-10-11 14:42:14,986 [wrapper] Pilot exit status: 0
[2025-10-11 16:42:15] 2025-10-11 14:42:14,994 [wrapper] pandaids: 6829591054
[2025-10-11 16:42:15] 2025-10-11 14:42:15,019 [wrapper] cleanup supervisor_pilot 3745966 3698331
[2025-10-11 16:42:15] 2025-10-11 14:42:15,021 [wrapper] Test setup, not cleaning
[2025-10-11 16:42:15] 2025-10-11 14:42:15,023 [wrapper] apfmon messages muted
[2025-10-11 16:42:15] 2025-10-11 14:42:15,024 [wrapper] ==== wrapper stdout END ====
[2025-10-11 16:42:15] 2025-10-11 14:42:15,026 [wrapper] ==== wrapper stderr END ====
[2025-10-11 16:42:15]  *** Error codes and diagnostics ***
[2025-10-11 16:42:15]     "exeErrorCode": 0,
[2025-10-11 16:42:15]     "exeErrorDiag": "",
[2025-10-11 16:42:15]     "pilotErrorCode": 0,
[2025-10-11 16:42:15]     "pilotErrorDiag": "",
[2025-10-11 16:42:15]  *** Listing of results directory ***
[2025-10-11 16:42:15] total 394828
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc      5112 Oct  4 13:54 queuedata.json
[2025-10-11 16:42:15] -rwx------ 1 boinc boinc     36292 Oct  4 13:56 runpilot2-wrapper.sh
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc    552446 Oct  4 13:56 pilot3.tar.gz
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc       100 Oct 11 16:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 16:42:15] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 16:04 run_atlas
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc       105 Oct 11 16:04 job.xml
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc      9445 Oct 11 16:04 init_data.xml
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc 213600669 Oct 11 16:04 EVNT.46376901._002112.pool.root.1
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:04 start_atlas.sh
[2025-10-11 16:42:15] drwxrwx--x 2 boinc boinc      4096 Oct 11 16:04 shared
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc    565601 Oct 11 16:04 input.tar.gz
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc         0 Oct 11 16:04 boinc_lockfile
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc      2519 Oct 11 16:04 pandaJob.out
[2025-10-11 16:42:15] -rw------- 1 boinc boinc    975520 Oct 11 16:05 agis_schedconf.cvmfs.json
[2025-10-11 16:42:15] -rw------- 1 boinc boinc   1560580 Oct 11 16:05 agis_ddmendpoints.agis.ALL.json
[2025-10-11 16:42:15] drwx------ 4 boinc boinc      4096 Oct 11 16:05 pilot3
[2025-10-11 16:42:15] -rw------- 1 boinc boinc 185411720 Oct 11 16:41 HITS.46376905._058805.pool.root.1
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc       529 Oct 11 16:41 boinc_task_state.xml
[2025-10-11 16:42:15] -rw------- 1 boinc boinc        95 Oct 11 16:41 pilot_heartbeat.json
[2025-10-11 16:42:15] -rw------- 1 boinc boinc      1018 Oct 11 16:41 memory_monitor_summary.json
[2025-10-11 16:42:15] -rw------- 1 boinc boinc    340496 Oct 11 16:41 log.46376905._058805.job.log.tgz.1
[2025-10-11 16:42:15] -rw------- 1 boinc boinc      7771 Oct 11 16:41 heartbeat.json
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc      8192 Oct 11 16:42 boinc_mmap_file
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc        27 Oct 11 16:42 wrapper_checkpoint.txt
[2025-10-11 16:42:15] -rw------- 1 boinc boinc      4823 Oct 11 16:42 pilotlog.txt
[2025-10-11 16:42:15] -rw------- 1 boinc boinc    355172 Oct 11 16:42 log.46376905._058805.job.log.1
[2025-10-11 16:42:15] -rw------- 1 boinc boinc       357 Oct 11 16:42 output.list
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc       620 Oct 11 16:42 runtime_log
[2025-10-11 16:42:15] -rw------- 1 boinc boinc    716800 Oct 11 16:42 result.tar.gz
[2025-10-11 16:42:15] -rw------- 1 boinc boinc       658 Oct 11 16:42 YpXKDmq3FP8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmNELNDm5ZDoVm.diag
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc      8740 Oct 11 16:42 runtime_log.err
[2025-10-11 16:42:15] -rw-r--r-- 1 boinc boinc     21794 Oct 11 16:42 stderr.txt
[2025-10-11 16:42:15] HITS file was successfully produced:
[2025-10-11 16:42:15] -rw------- 1 boinc boinc 185411720 Oct 11 16:41 shared/HITS.pool.root.1
[2025-10-11 16:42:15]  *** Contents of shared directory: ***
[2025-10-11 16:42:15] total 390944
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc 213600669 Oct 11 16:04 ATLAS.root_0
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc     15120 Oct 11 16:04 start_atlas.sh
[2025-10-11 16:42:15] -rw-r--r-- 2 boinc boinc    565601 Oct 11 16:04 input.tar.gz
[2025-10-11 16:42:15] -rw------- 1 boinc boinc 185411720 Oct 11 16:41 HITS.pool.root.1
[2025-10-11 16:42:15] -rw------- 1 boinc boinc    716800 Oct 11 16:42 result.tar.gz
16:42:17 (3693938): run_atlas exited; CPU time 23513.613170
16:42:17 (3693938): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN