Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:07 (3167349): wrapper (7.7.26015): starting
00:03:07 (3167349): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 00:03:07] Arguments: --nthreads 12
[2025-10-11 00:03:07] Threads: 12
[2025-10-11 00:03:07] Checking for CVMFS
[2025-10-11 00:03:08] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:03:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:03:09] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:03:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:03:10] 2.13.1.0 3059378 46873 92932 151571 3 64 38396693 40960001 11144 16776704 0 43421822 99.803 26458697 43480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 00:03:10] CVMFS is ok
[2025-10-11 00:03:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:03:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:03:10] Further information can be found at the LHC@home message board.
[2025-10-11 00:03:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:03:10] Checking for apptainer binary...
[2025-10-11 00:03:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:03:10] Running /usr/bin/apptainer --version
[2025-10-11 00:03:10] apptainer version 1.4.3-1.el9
[2025-10-11 00:03:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:03:12] c-211-9.aglt2.org
[2025-10-11 00:03:12] apptainer works
[2025-10-11 00:03:12] Set ATHENA_PROC_NUMBER=12
[2025-10-11 00:03:12] Set ATHENA_CORE_NUMBER=12
[2025-10-11 00:03:12] Starting ATLAS job with PandaID=6837705628
[2025-10-11 00:03:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:27:39 (3246918): wrapper (7.7.26015): starting
00:27:39 (3246918): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 00:27:39] Arguments: --nthreads 12
[2025-10-11 00:27:39] Threads: 12
[2025-10-11 00:27:39] This job has been restarted, cleaning up previous attempt
[2025-10-11 00:27:39] Checking for CVMFS
[2025-10-11 00:27:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:27:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:27:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:27:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:27:40] 2.13.1.0 3059378 46898 113496 151572 3 479 38428268 40960000 8536 16776704 0 43555723 99.804 26460078 43480 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 00:27:40] CVMFS is ok
[2025-10-11 00:27:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:27:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:27:40] Further information can be found at the LHC@home message board.
[2025-10-11 00:27:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:27:40] Checking for apptainer binary...
[2025-10-11 00:27:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:27:40] Running /usr/bin/apptainer --version
[2025-10-11 00:27:40] apptainer version 1.4.3-1.el9
[2025-10-11 00:27:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:27:40] c-211-9.aglt2.org
[2025-10-11 00:27:40] apptainer works
[2025-10-11 00:27:40] Set ATHENA_PROC_NUMBER=12
[2025-10-11 00:27:40] Set ATHENA_CORE_NUMBER=12
[2025-10-11 00:27:40] Starting ATLAS job with PandaID=6837705628
[2025-10-11 00:27:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:22:35]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:22:35] 2025-10-11 09:21:25,645 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:22:35] 2025-10-11 09:21:25,646 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:22:35] 2025-10-11 09:21:25,689 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:22:35] 2025-10-11 09:21:25,723 | INFO     | sum of square deviations: 7410187062.0
[2025-10-11 05:22:35] 2025-10-11 09:21:25,726 | INFO     | sum of deviations: -13250199468.999992
[2025-10-11 05:22:35] 2025-10-11 09:21:25,727 | INFO     | mean x: 1760165663.0
[2025-10-11 05:22:35] 2025-10-11 09:21:25,769 | INFO     | mean y: 2631857.840277778
[2025-10-11 05:22:35] 2025-10-11 09:21:25,770 | INFO     | -- intersect: 3149994527.378595
[2025-10-11 05:22:35] 2025-10-11 09:21:25,770 | INFO     | intersect: 3149994527.378595
[2025-10-11 05:22:35] 2025-10-11 09:21:25,771 | INFO     | chi2: 4.803619846468186
[2025-10-11 05:22:35] 2025-10-11 09:21:25,771 | INFO     | sum of square deviations: 7031273940.197873
[2025-10-11 05:22:35] 2025-10-11 09:21:25,821 | INFO     | sum of deviations: 65170586051.58652
[2025-10-11 05:22:35] 2025-10-11 09:21:25,822 | INFO     | mean x: 1760165510.5441697
[2025-10-11 05:22:35] 2025-10-11 09:21:25,822 | INFO     | mean y: 2663304.113074205
[2025-10-11 05:22:35] 2025-10-11 09:21:25,822 | INFO     | -- intersect: -16311737022.995407
[2025-10-11 05:22:35] 2025-10-11 09:21:25,822 | INFO     | intersect: -16311737022.995407
[2025-10-11 05:22:35] 2025-10-11 09:21:25,823 | INFO     | chi2: 1.8165232927088142
[2025-10-11 05:22:35] 2025-10-11 09:21:25,823 | INFO     | current chi2=1.8165232927088142 (change=62.18428287899604 %)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,823 | INFO     | sum of square deviations: 6665438040.561123
[2025-10-11 05:22:35] 2025-10-11 09:21:25,850 | INFO     | sum of deviations: 63919202003.503555
[2025-10-11 05:22:35] 2025-10-11 09:21:25,850 | INFO     | mean x: 1760165358.0719423
[2025-10-11 05:22:35] 2025-10-11 09:21:25,850 | INFO     | mean y: 2662781.974820144
[2025-10-11 05:22:35] 2025-10-11 09:21:25,851 | INFO     | -- intersect: -16876702744.720295
[2025-10-11 05:22:35] 2025-10-11 09:21:25,851 | INFO     | intersect: -16876702744.720295
[2025-10-11 05:22:35] 2025-10-11 09:21:25,851 | INFO     | chi2: 1.817015269011701
[2025-10-11 05:22:35] 2025-10-11 09:21:25,851 | INFO     | current chi2=1.817015269011701 (change=-0.027083401840288943 %)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,852 | INFO     | right removable region: 277
[2025-10-11 05:22:35] 2025-10-11 09:21:25,856 | INFO     | sum of square deviations: 7030834740.19787
[2025-10-11 05:22:35] 2025-10-11 09:21:25,859 | INFO     | sum of deviations: -70011682853.81625
[2025-10-11 05:22:35] 2025-10-11 09:21:25,860 | INFO     | mean x: 1760165815.5441697
[2025-10-11 05:22:35] 2025-10-11 09:21:25,860 | INFO     | mean y: 2654554.5053003533
[2025-10-11 05:22:35] 2025-10-11 09:21:25,860 | INFO     | -- intersect: 17530042894.81766
[2025-10-11 05:22:35] 2025-10-11 09:21:25,867 | INFO     | intersect: 17530042894.81766
[2025-10-11 05:22:35] 2025-10-11 09:21:25,868 | INFO     | chi2: 3.1409520269473723
[2025-10-11 05:22:35] 2025-10-11 09:21:25,868 | INFO     | current chi2=3.1409520269473723 (change=34.612810186119816 %)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,869 | INFO     | sum of square deviations: 6664645454.751821
[2025-10-11 05:22:35] 2025-10-11 09:21:25,909 | INFO     | sum of deviations: -75522123969.12952
[2025-10-11 05:22:35] 2025-10-11 09:21:25,909 | INFO     | mean x: 1760165968.0899282
[2025-10-11 05:22:35] 2025-10-11 09:21:25,909 | INFO     | mean y: 2656816.525179856
[2025-10-11 05:22:35] 2025-10-11 09:21:25,909 | INFO     | -- intersect: 19948424877.38305
[2025-10-11 05:22:35] 2025-10-11 09:21:25,910 | INFO     | intersect: 19948424877.38305
[2025-10-11 05:22:35] 2025-10-11 09:21:25,910 | INFO     | chi2: 3.0951063555753935
[2025-10-11 05:22:35] 2025-10-11 09:21:25,910 | INFO     | current chi2=3.0951063555753935 (change=1.4596106842337002 %)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,910 | INFO     | left removable region: 20
[2025-10-11 05:22:35] 2025-10-11 09:21:25,911 | INFO     | sum of square deviations: 5266029799.992203
[2025-10-11 05:22:35] 2025-10-11 09:21:25,955 | INFO     | sum of deviations: 4681422984.326852
[2025-10-11 05:22:35] 2025-10-11 09:21:25,956 | INFO     | mean x: 1760165937.766537
[2025-10-11 05:22:35] 2025-10-11 09:21:25,956 | INFO     | mean y: 2688090.805447471
[2025-10-11 05:22:35] 2025-10-11 09:21:25,956 | INFO     | -- intersect: -1562073520.9312909
[2025-10-11 05:22:35] 2025-10-11 09:21:25,956 | INFO     | intersect: -1562073520.9312909
[2025-10-11 05:22:35] 2025-10-11 09:21:25,956 | INFO     | chi2: 0.04164595151403758
[2025-10-11 05:22:35] 2025-10-11 09:21:25,957 | INFO     | -- intersect: -1562073520.9312909
[2025-10-11 05:22:35] 2025-10-11 09:21:25,957 | INFO     | current memory leak: 0.89 B/s (using 257 data points, chi2=0.04)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,958 | INFO     | could have reported an average CPU frequency of 2510 MHz (13 samples)
[2025-10-11 05:22:35] 2025-10-11 09:21:25,958 | INFO     | ..............................
[2025-10-11 05:22:35] 2025-10-11 09:21:25,986 | INFO     | . Timing measurements:
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . get job = 0 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . initial setup = 1 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . payload setup = 12 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . stage-in = 0 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . payload execution = 17561 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . stage-out = 6 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | . log creation = 1 s
[2025-10-11 05:22:35] 2025-10-11 09:21:25,987 | INFO     | ..............................
[2025-10-11 05:22:35] 2025-10-11 09:21:26,137 | INFO     | time since job start (17611s) is within the limit (172800.0s)
[2025-10-11 05:22:35] 2025-10-11 09:21:26,324 | INFO     | 
[2025-10-11 05:22:35] 2025-10-11 09:21:26,325 | INFO     | job summary report
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | --------------------------------------------------
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | PanDA job id: 6837705628
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | task id: 46676269
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | errors: (none)
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:22:35] 2025-10-11 09:21:26,326 | INFO     | pilot state: finished 
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | transexitcode: 0
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | exeerrorcode: 0
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | exeerrordiag: 
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | exitcode: 0
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | exitmsg: OK
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | cpuconsumptiontime: 62797 s
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | nevents: 400
[2025-10-11 05:22:35] 2025-10-11 09:21:26,327 | INFO     | neventsw: 0
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | pid: 3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | pgrp: 3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | corecount: 12
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | event service: False
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | sizes: {0: 2348851, 4: 2349113, 11: 2349141, 17577: 2381243, 17584: 2390241, 17585: 2390297, 17596: 2390619}
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | --------------------------------------------------
[2025-10-11 05:22:35] 2025-10-11 09:21:26,328 | INFO     | 
[2025-10-11 05:22:35] 2025-10-11 09:21:26,329 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-10-11 05:22:35] 2025-10-11 09:21:26,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,435 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:22:35] 2025-10-11 09:21:26,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,436 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:22:35] 2025-10-11 09:21:26,436 | INFO     | job 6837705628 has completed (purged errors)
[2025-10-11 05:22:35] 2025-10-11 09:21:26,436 | INFO     | overall cleanup function is called
[2025-10-11 05:22:35] 2025-10-11 09:21:27,445 | INFO     | --- collectZombieJob: --- 10, [3278319]
[2025-10-11 05:22:35] 2025-10-11 09:21:27,456 | INFO     | zombie collector waiting for pid 3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:27,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:22:35] 2025-10-11 09:21:27,457 | INFO     | collected zombie processes
[2025-10-11 05:22:35] 2025-10-11 09:21:27,457 | INFO     | will attempt to kill all subprocesses of pid=3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:28,740 | INFO     | process IDs to be killed: [3278319] (in reverse order)
[2025-10-11 05:22:35] 2025-10-11 09:21:28,836 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:22:35] 2025-10-11 09:21:28,836 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:22:35] 2025-10-11 09:21:28,847 | INFO     | did not find any defunct processes belonging to 3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:28,857 | INFO     | did not find any defunct processes belonging to 3278319
[2025-10-11 05:22:35] 2025-10-11 09:21:28,858 | INFO     | ready for new job
[2025-10-11 05:22:35] 2025-10-11 09:21:28,858 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:22:35] 2025-10-11 09:21:28,861 | INFO     | ***************************************
[2025-10-11 05:22:35] 2025-10-11 09:21:28,861 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:22:35] 2025-10-11 09:21:28,861 | INFO     | ***************************************
[2025-10-11 05:22:35] 2025-10-11 09:21:28,861 | INFO     | 
[2025-10-11 05:22:35] 2025-10-11 09:21:28,865 | INFO     | architecture information:
[2025-10-11 05:22:35] 2025-10-11 09:21:28,865 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:22:35] 2025-10-11 09:21:28,888 | INFO     | cat /etc/os-release:
[2025-10-11 05:22:35] NAME="CentOS Linux"
[2025-10-11 05:22:35] VERSION="7 (Core)"
[2025-10-11 05:22:35] ID="centos"
[2025-10-11 05:22:35] ID_LIKE="rhel fedora"
[2025-10-11 05:22:35] VERSION_ID="7"
[2025-10-11 05:22:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:22:35] ANSI_COLOR="0;31"
[2025-10-11 05:22:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:22:35] HOME_URL="https://www.centos.org/"
[2025-10-11 05:22:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:22:35] 
[2025-10-11 05:22:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:22:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:22:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:22:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:22:35] 
[2025-10-11 05:22:35] 2025-10-11 09:21:28,889 | INFO     | ***************************************
[2025-10-11 05:22:35] 2025-10-11 09:21:29,392 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-10-11 05:22:35] 2025-10-11 09:21:29,476 | INFO     | sufficient remaining disk space (63319310336 B)
[2025-10-11 05:22:35] 2025-10-11 09:21:29,477 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:22:35] 2025-10-11 09:21:29,496 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:22:35] 2025-10-11 09:21:29,497 | INFO     | update_server=False
[2025-10-11 05:22:35] 2025-10-11 09:21:29,497 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:22:35] 2025-10-11 09:21:29,497 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:22:35] 2025-10-11 09:21:29,497 | INFO     | aborting loop
[2025-10-11 05:22:35] 2025-10-11 09:21:29,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:22:35] 2025-10-11 09:21:29,700 | INFO     | all job control threads have been joined
[2025-10-11 05:22:35] 2025-10-11 09:21:30,093 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:22:35] 2025-10-11 09:21:30,262 | INFO     | all data control threads have been joined
[2025-10-11 05:22:35] 2025-10-11 09:21:30,507 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,520 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,596 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,601 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,634 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,644 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,707 | INFO     | [job] control thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:30,891 | INFO     | all payload control threads have been joined
[2025-10-11 05:22:35] 2025-10-11 09:21:31,246 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:31,269 | INFO     | [data] control thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:31,372 | INFO     | [job] validate thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:31,377 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:22:35] 2025-10-11 09:21:31,612 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:31,897 | INFO     | [payload] control thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:32,045 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:32,047 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:32,383 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:34,102 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:22:35] 2025-10-11 09:21:59,951 | INFO     | PID=3257978 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:22:35] 2025-10-11 09:21:59,951 | INFO     | .. there are 9 such processes running
[2025-10-11 05:22:35] 2025-10-11 09:21:59,952 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:22:35] 2025-10-11 09:21:59,952 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:22:35] 2025-10-11 09:21:59,952 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:22:35] 2025-10-11 09:22:27,934 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:22:35] 2025-10-11 09:22:28,380 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140560578152256)>', '<ExcThread(monitor, started 140560077661952)>']
[2025-10-11 05:22:35] 2025-10-11 09:22:29,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:22:35] 2025-10-11 09:22:29,130 | INFO     | [monitor] control thread has ended
[2025-10-11 05:22:35] 2025-10-11 09:22:33,438 | INFO     | all workflow threads have been joined
[2025-10-11 05:22:35] 2025-10-11 09:22:33,439 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:22:35] 2025-10-11 09:22:33,441 | INFO     | traces error code: 0
[2025-10-11 05:22:35] 2025-10-11 09:22:33,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:22:35] 2025-10-11 09:22:34,423 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:22:35] 2025-10-11 09:22:34,427 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:22:35] 2025-10-11 09:22:34,430 [wrapper] pilotpid: 3257978
[2025-10-11 05:22:35] 2025-10-11 09:22:34,433 [wrapper] Pilot exit status: 0
[2025-10-11 05:22:35] 2025-10-11 09:22:34,519 [wrapper] pandaids: 6837705628 6837705628
[2025-10-11 05:22:35] 2025-10-11 09:22:34,585 [wrapper] cleanup supervisor_pilot 3663100 3257979
[2025-10-11 05:22:35] 2025-10-11 09:22:34,589 [wrapper] Test setup, not cleaning
[2025-10-11 05:22:35] 2025-10-11 09:22:34,593 [wrapper] apfmon messages muted
[2025-10-11 05:22:35] 2025-10-11 09:22:34,597 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:22:35] 2025-10-11 09:22:34,600 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:22:35]  *** Error codes and diagnostics ***
[2025-10-11 05:22:35]     "exeErrorCode": 0,
[2025-10-11 05:22:35]     "exeErrorDiag": "",
[2025-10-11 05:22:35]     "pilotErrorCode": 0,
[2025-10-11 05:22:35]     "pilotErrorDiag": "",
[2025-10-11 05:22:35]  *** Listing of results directory ***
[2025-10-11 05:22:35] total 634812
[2025-10-11 05:22:35] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 13:17 pilot3.tar.gz
[2025-10-11 05:22:35] -rwx------. 1 boincer umatlas     36292 Oct 10 13:21 runpilot2-wrapper.sh
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 13:21 queuedata.json
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:22:35] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:02 run_atlas
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:02 job.xml
[2025-10-11 05:22:35] -rw-r--r--. 3 boincer umatlas 221101122 Oct 11 00:03 EVNT.46676267._001719.pool.root.1
[2025-10-11 05:22:35] -rw-r--r--. 3 boincer umatlas 221101122 Oct 11 00:03 ATLAS.root_0
[2025-10-11 05:22:35] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:03 shared
[2025-10-11 05:22:35] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 00:03 input.tar.gz
[2025-10-11 05:22:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:03 boinc_lockfile
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas      2547 Oct 11 00:27 pandaJob.out
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas    975517 Oct 11 00:27 agis_schedconf.cvmfs.json
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas 198534604 Oct 11 05:16 HITS.46676269._042434.pool.root.1
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas       531 Oct 11 05:16 boinc_task_state.xml
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas      1053 Oct 11 05:21 memory_monitor_summary.json
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas   1560580 Oct 11 05:21 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas        96 Oct 11 05:21 pilot_heartbeat.json
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas    535486 Oct 11 05:21 log.46676269._042434.job.log.tgz.1
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas      6614 Oct 11 05:21 init_data.xml
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas      7849 Oct 11 05:21 heartbeat.json
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 05:22 boinc_mmap_file
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas        28 Oct 11 05:22 wrapper_checkpoint.txt
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas      4823 Oct 11 05:22 pilotlog.txt
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas   2168534 Oct 11 05:22 log.46676269._042434.job.log.1
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas       357 Oct 11 05:22 output.list
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas       620 Oct 11 05:22 runtime_log
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas   2723840 Oct 11 05:22 result.tar.gz
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas      8786 Oct 11 05:22 runtime_log.err
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas       786 Oct 11 05:22 dXeLDmvyVR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmJJQMDmwbI7Mm.diag
[2025-10-11 05:22:35] -rw-r--r--. 1 boincer umatlas     23157 Oct 11 05:22 stderr.txt
[2025-10-11 05:22:35] HITS file was successfully produced:
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas 198534604 Oct 11 05:16 shared/HITS.pool.root.1
[2025-10-11 05:22:35]  *** Contents of shared directory: ***
[2025-10-11 05:22:35] total 413044
[2025-10-11 05:22:35] -rw-r--r--. 3 boincer umatlas 221101122 Oct 11 00:03 ATLAS.root_0
[2025-10-11 05:22:35] -rw-r--r--. 2 boincer umatlas    569675 Oct 11 00:03 input.tar.gz
[2025-10-11 05:22:35] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:03 start_atlas.sh
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas 198534604 Oct 11 05:16 HITS.pool.root.1
[2025-10-11 05:22:35] -rw-------. 1 boincer umatlas   2723840 Oct 11 05:22 result.tar.gz
05:22:36 (3246918): run_atlas exited; CPU time 63295.997974
05:22:36 (3246918): called boinc_finish(0)

</stderr_txt>
]]>

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