Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:50:45 (1869850): wrapper (7.7.26015): starting
12:50:45 (1869850): wrapper: running run_atlas (--nthreads 2)
[2025-10-11 12:50:45] Arguments: --nthreads 2
[2025-10-11 12:50:45] Threads: 2
[2025-10-11 12:50:45] Checking for CVMFS
[2025-10-11 12:50:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 12:50:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 12:50:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 12:50:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 12:50:45] 2.9.2.0 1267943 2616 58332 151581 1 57 31262236 36864000 0 130560 0 1588167 99.988 90378 1091 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 12:50:45] CVMFS is ok
[2025-10-11 12:50:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 12:50:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 12:50:45] Further information can be found at the LHC@home message board.
[2025-10-11 12:50:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 12:50:45] Checking for apptainer binary...
[2025-10-11 12:50:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 12:50:45] Running /usr/bin/apptainer --version
[2025-10-11 12:50:45] apptainer version 1.4.1-1.1
[2025-10-11 12:50:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 12:50:45] thA334a
[2025-10-11 12:50:45] apptainer works
[2025-10-11 12:50:45] Set ATHENA_PROC_NUMBER=2
[2025-10-11 12:50:45] Set ATHENA_CORE_NUMBER=2
[2025-10-11 12:50:45] Starting ATLAS job with PandaID=6837732194
[2025-10-11 12:50:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 14:58:13]  *** The last 200 lines of the pilot log: ***
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 14:58:13] 2025-10-11 12:57:27,638 | INFO     | job 6837732194 has completed (purged errors)
[2025-10-11 14:58:13] 2025-10-11 12:57:27,639 | INFO     | overall cleanup function is called
[2025-10-11 14:58:13] 2025-10-11 12:57:28,645 | INFO     | --- collectZombieJob: --- 10, [1879961]
[2025-10-11 14:58:13] 2025-10-11 12:57:28,645 | INFO     | zombie collector waiting for pid 1879961
[2025-10-11 14:58:13] 2025-10-11 12:57:28,646 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 14:58:13] 2025-10-11 12:57:28,646 | INFO     | collected zombie processes
[2025-10-11 14:58:13] 2025-10-11 12:57:28,647 | INFO     | will attempt to kill all subprocesses of pid=1879961
[2025-10-11 14:58:13] 2025-10-11 12:57:28,680 | INFO     | process IDs to be killed: [1879961] (in reverse order)
[2025-10-11 14:58:13] 2025-10-11 12:57:28,702 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 14:58:13] 2025-10-11 12:57:28,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 14:58:13] 2025-10-11 12:57:28,703 | INFO     | did not find any defunct processes belonging to 1879961
[2025-10-11 14:58:13] 2025-10-11 12:57:28,703 | INFO     | did not find any defunct processes belonging to 1879961
[2025-10-11 14:58:13] 2025-10-11 12:57:28,703 | INFO     | ready for new job
[2025-10-11 14:58:13] 2025-10-11 12:57:28,703 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | ***************************************
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | ***************************************
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | 
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | architecture information:
[2025-10-11 14:58:13] 2025-10-11 12:57:28,704 | INFO     | executing command: cat /etc/os-release
[2025-10-11 14:58:13] 2025-10-11 12:57:28,713 | INFO     | cat /etc/os-release:
[2025-10-11 14:58:13] NAME="CentOS Linux"
[2025-10-11 14:58:13] VERSION="7 (Core)"
[2025-10-11 14:58:13] ID="centos"
[2025-10-11 14:58:13] ID_LIKE="rhel fedora"
[2025-10-11 14:58:13] VERSION_ID="7"
[2025-10-11 14:58:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 14:58:13] ANSI_COLOR="0;31"
[2025-10-11 14:58:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 14:58:13] HOME_URL="https://www.centos.org/"
[2025-10-11 14:58:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 14:58:13] 
[2025-10-11 14:58:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 14:58:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 14:58:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 14:58:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 14:58:13] 
[2025-10-11 14:58:13] 2025-10-11 12:57:28,713 | INFO     | ***************************************
[2025-10-11 14:58:13] 2025-10-11 12:57:29,216 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 14:58:13] 2025-10-11 12:57:29,227 | INFO     | sufficient remaining disk space (492669239296 B)
[2025-10-11 14:58:13] 2025-10-11 12:57:29,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 14:58:13] 2025-10-11 12:57:29,228 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 14:58:13] 2025-10-11 12:57:29,228 | INFO     | update_server=False
[2025-10-11 14:58:13] 2025-10-11 12:57:29,228 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 14:58:13] 2025-10-11 12:57:29,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:58:13] 2025-10-11 12:57:29,228 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 14:58:13] 2025-10-11 12:57:29,438 | INFO     | all data control threads have been joined
[2025-10-11 14:58:13] 2025-10-11 12:57:30,040 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 14:58:13] 2025-10-11 12:57:30,040 | INFO     | aborting loop
[2025-10-11 14:58:13] 2025-10-11 12:57:30,234 | INFO     | [job] retrieve thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:30,234 | INFO     | [job] queue monitor thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:30,399 | INFO     | all payload control threads have been joined
[2025-10-11 14:58:13] 2025-10-11 12:57:30,444 | INFO     | [data] control thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:30,523 | INFO     | [payload] validate_post thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:30,837 | INFO     | all job control threads have been joined
[2025-10-11 14:58:13] 2025-10-11 12:57:30,936 | INFO     | [data] copytool_in thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:30,942 | INFO     | [payload] failed_post thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,046 | INFO     | [job] job monitor thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,233 | INFO     | [data] copytool_out thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,299 | INFO     | [job] validate thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,307 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,394 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,405 | INFO     | [payload] control thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,450 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,843 | INFO     | [job] control thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:31,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 14:58:13] 2025-10-11 12:57:35,879 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:39,322 | INFO     | job.realtimelogging is not enabled
[2025-10-11 14:58:13] 2025-10-11 12:57:40,328 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 14:58:13] 2025-10-11 12:57:59,303 | INFO     | PID=1873553 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 14:58:13] 2025-10-11 12:57:59,304 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 14:58:13] 2025-10-11 12:57:59,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 14:58:13] 2025-10-11 12:57:59,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 14:58:13] 2025-10-11 12:58:06,618 | INFO     | [monitor] cgroup control has ended
[2025-10-11 14:58:13] 2025-10-11 12:58:08,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140120403220288)>', '<ExcThread(monitor, started 140119910622976)>']
[2025-10-11 14:58:13] 2025-10-11 12:58:09,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 14:58:13] 2025-10-11 12:58:09,358 | INFO     | [monitor] control thread has ended
[2025-10-11 14:58:13] 2025-10-11 12:58:13,735 | INFO     | all workflow threads have been joined
[2025-10-11 14:58:13] 2025-10-11 12:58:13,736 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 14:58:13] 2025-10-11 12:58:13,736 | INFO     | traces error code: 0
[2025-10-11 14:58:13] 2025-10-11 12:58:13,737 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 14:58:13] 2025-10-11 12:58:13,779 [wrapper] ==== pilot stdout END ====
[2025-10-11 14:58:13] 2025-10-11 12:58:13,781 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 14:58:13] 2025-10-11 12:58:13,783 [wrapper] pilotpid: 1873553
[2025-10-11 14:58:13] 2025-10-11 12:58:13,786 [wrapper] Pilot exit status: 0
[2025-10-11 14:58:13] 2025-10-11 12:58:13,792 [wrapper] pandaids: 6837732194
[2025-10-11 14:58:13] 2025-10-11 12:58:13,804 [wrapper] cleanup supervisor_pilot 1894179 1873554
[2025-10-11 14:58:13] 2025-10-11 12:58:13,806 [wrapper] Test setup, not cleaning
[2025-10-11 14:58:13] 2025-10-11 12:58:13,808 [wrapper] apfmon messages muted
[2025-10-11 14:58:13] 2025-10-11 12:58:13,810 [wrapper] ==== wrapper stdout END ====
[2025-10-11 14:58:13] 2025-10-11 12:58:13,812 [wrapper] ==== wrapper stderr END ====
[2025-10-11 14:58:13]  *** Error codes and diagnostics ***
[2025-10-11 14:58:13]     "exeErrorCode": 0,
[2025-10-11 14:58:13]     "exeErrorDiag": "",
[2025-10-11 14:58:13]     "pilotErrorCode": 0,
[2025-10-11 14:58:13]     "pilotErrorDiag": "",
[2025-10-11 14:58:13]  *** Listing of results directory ***
[2025-10-11 14:58:13] total 415176
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc    557409 Oct 10 21:52 pilot3.tar.gz
[2025-10-11 14:58:13] -rwx------ 1 boinc boinc     36292 Oct 10 22:03 runpilot2-wrapper.sh
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc      5112 Oct 10 22:03 queuedata.json
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc       100 Oct 11 12:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 14:58:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 12:50 run_atlas
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc       105 Oct 11 12:50 job.xml
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc 221372268 Oct 11 12:50 EVNT.46676267._001799.pool.root.1
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc    569675 Oct 11 12:50 input.tar.gz
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 12:50 start_atlas.sh
[2025-10-11 14:58:13] drwxrwx--x 2 boinc boinc      4096 Oct 11 12:50 shared
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc         0 Oct 11 12:50 boinc_setup_complete
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc      6207 Oct 11 12:50 init_data.xml
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc         0 Oct 11 12:50 boinc_lockfile
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc      2548 Oct 11 12:50 pandaJob.out
[2025-10-11 14:58:13] -rw------- 1 boinc boinc    975517 Oct 11 12:50 agis_schedconf.cvmfs.json
[2025-10-11 14:58:13] -rw------- 1 boinc boinc   1560580 Oct 11 12:50 agis_ddmendpoints.agis.ALL.json
[2025-10-11 14:58:13] drwx------ 5 boinc boinc      4096 Oct 11 12:50 pilot3
[2025-10-11 14:58:13] -rw------- 1 boinc boinc 197144589 Oct 11 14:57 HITS.46676269._044446.pool.root.1
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc       529 Oct 11 14:57 boinc_task_state.xml
[2025-10-11 14:58:13] -rw------- 1 boinc boinc      1014 Oct 11 14:57 memory_monitor_summary.json
[2025-10-11 14:58:13] -rw------- 1 boinc boinc    263582 Oct 11 14:57 log.46676269._044446.job.log.tgz.1
[2025-10-11 14:58:13] -rw------- 1 boinc boinc      7745 Oct 11 14:57 heartbeat.json
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc        27 Oct 11 14:57 wrapper_checkpoint.txt
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc      8192 Oct 11 14:57 boinc_mmap_file
[2025-10-11 14:58:13] -rw------- 1 boinc boinc        95 Oct 11 14:57 pilot_heartbeat.json
[2025-10-11 14:58:13] -rw------- 1 boinc boinc      4824 Oct 11 14:58 pilotlog.txt
[2025-10-11 14:58:13] -rw------- 1 boinc boinc   1096010 Oct 11 14:58 log.46676269._044446.job.log.1
[2025-10-11 14:58:13] -rw------- 1 boinc boinc       357 Oct 11 14:58 output.list
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc       620 Oct 11 14:58 runtime_log
[2025-10-11 14:58:13] -rw------- 1 boinc boinc   1382400 Oct 11 14:58 result.tar.gz
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc      8782 Oct 11 14:58 runtime_log.err
[2025-10-11 14:58:13] -rw------- 1 boinc boinc       660 Oct 11 14:58 8mMKDm5VYR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmpVQMDm9DwQpn.diag
[2025-10-11 14:58:13] -rw-r--r-- 1 boinc boinc     12833 Oct 11 14:58 stderr.txt
[2025-10-11 14:58:13] HITS file was successfully produced:
[2025-10-11 14:58:13] -rw------- 1 boinc boinc 197144589 Oct 11 14:57 shared/HITS.pool.root.1
[2025-10-11 14:58:13]  *** Contents of shared directory: ***
[2025-10-11 14:58:13] total 410648
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc 221372268 Oct 11 12:50 ATLAS.root_0
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc    569675 Oct 11 12:50 input.tar.gz
[2025-10-11 14:58:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 12:50 start_atlas.sh
[2025-10-11 14:58:13] -rw------- 1 boinc boinc 197144589 Oct 11 14:57 HITS.pool.root.1
[2025-10-11 14:58:13] -rw------- 1 boinc boinc   1382400 Oct 11 14:58 result.tar.gz
14:58:15 (1869850): run_atlas exited; CPU time 14804.830515
14:58:15 (1869850): called boinc_finish(0)

</stderr_txt>
]]>

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