Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
21:22:15 (10879): wrapper (7.7.26015): starting
21:22:15 (10879): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 21:22:15] Arguments: --nthreads 12
[2025-10-10 21:22:15] Threads: 12
[2025-10-10 21:22:15] Checking for CVMFS
[2025-10-10 21:22:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 21:22:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 21:22:15] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 21:22:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 21:22:16] 2.11.2.0 2949 220776 95076 151567 3 56 17353628 20275200 1 130560 1 106313407 99.984 12293062 12033 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 21:22:16] CVMFS is ok
[2025-10-10 21:22:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 21:22:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 21:22:16] Further information can be found at the LHC@home message board.
[2025-10-10 21:22:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 21:22:16] Checking for apptainer binary...
[2025-10-10 21:22:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 21:22:16] Running /usr/bin/apptainer --version
[2025-10-10 21:22:16] apptainer version 1.3.2-1.el7
[2025-10-10 21:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 21:22:17] c-205-13.aglt2.org
[2025-10-10 21:22:17] apptainer works
[2025-10-10 21:22:17] Set ATHENA_PROC_NUMBER=12
[2025-10-10 21:22:17] Set ATHENA_CORE_NUMBER=12
[2025-10-10 21:22:17] Starting ATLAS job with PandaID=6837663710
[2025-10-10 21:22:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 22:35:44]  *** The last 200 lines of the pilot log: ***
[2025-10-10 22:35:44]  scope=mc23_13p6TeV
[2025-10-10 22:35:44]  status=None
[2025-10-10 22:35:44]  status_code=0
[2025-10-10 22:35:44]  storage_token=
[2025-10-10 22:35:44]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837663710/log.46676269._040389.job.log.tgz.1
[2025-10-10 22:35:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/ce/log.46676269._040389.job.log.tgz.1
[2025-10-10 22:35:44]  workdir=None
[2025-10-10 22:35:44] ]
[2025-10-10 22:35:44] 2025-10-11 02:34:38,919 | INFO     | transferring file log.46676269._040389.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837663710/log.46676269._040389.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 22:35:44] 2025-10-11 02:34:38,919 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837663710/log.46676269._040389.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._040389.job
[2025-10-10 22:35:44] 2025-10-11 02:34:38,939 | INFO     | adding to output.list: log.46676269._040389.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/ce/log.46676269._040389.job.log.tg
[2025-10-10 22:35:44] 2025-10-11 02:34:38,940 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 22:35:44] 2025-10-11 02:34:38,941 | INFO     | summary of transferred files:
[2025-10-10 22:35:44] 2025-10-11 02:34:38,941 | INFO     |  -- lfn=log.46676269._040389.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 22:35:44] 2025-10-11 02:34:38,941 | INFO     | stage-out finished correctly
[2025-10-10 22:35:44] 2025-10-11 02:34:39,647 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 22:35:44] 2025-10-11 02:34:39,729 | INFO     | time since job start (4327s) is within the limit (172800.0s)
[2025-10-10 22:35:44] 2025-10-11 02:34:39,822 | WARNING  | process 20918 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 22:35:44] 2025-10-11 02:34:39,822 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837663710/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 22:35:44] 2025-10-11 02:34:39,916 | INFO     | number of running child processes to parent process 20918: 1
[2025-10-10 22:35:44] 2025-10-11 02:34:39,916 | INFO     | maximum number of monitored processes: 6
[2025-10-10 22:35:44] 2025-10-11 02:34:41,734 | INFO     | time since job start (4329s) is within the limit (172800.0s)
[2025-10-10 22:35:44] 2025-10-11 02:34:41,924 | INFO     | job 6837663710 has state=finished
[2025-10-10 22:35:44] 2025-10-11 02:34:41,925 | INFO     | preparing for final server update for job 6837663710 in state='finished'
[2025-10-10 22:35:44] 2025-10-11 02:34:41,925 | INFO     | this job has now completed (state=finished)
[2025-10-10 22:35:44] 2025-10-11 02:34:41,926 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 22:35:44] 2025-10-11 02:34:41,926 | INFO     | log transfer has been attempted: DONE
[2025-10-10 22:35:44] 2025-10-11 02:34:41,926 | INFO     | job 6837663710 has finished - writing final server update
[2025-10-10 22:35:44] 2025-10-11 02:34:41,926 | INFO     | total number of processed events: 400 (read)
[2025-10-10 22:35:44] 2025-10-11 02:34:41,927 | INFO     | executing command: lscpu
[2025-10-10 22:35:44] 2025-10-11 02:34:41,953 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 22:35:44] 2025-10-11 02:34:42,420 | INFO     | monitor loop #322: job 0:6837663710 is in state 'finished'
[2025-10-10 22:35:44] 2025-10-11 02:34:42,420 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 22:35:44] 2025-10-11 02:34:43,740 | INFO     | time since job start (4331s) is within the limit (172800.0s)
[2025-10-10 22:35:44] 2025-10-11 02:34:44,923 | INFO     | monitor loop #323: job 0:6837663710 is in state 'finished'
[2025-10-10 22:35:44] 2025-10-11 02:34:44,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 22:35:44] 2025-10-11 02:34:45,746 | INFO     | time since job start (4333s) is within the limit (172800.0s)
[2025-10-10 22:35:44] 2025-10-11 02:34:46,609 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 22:35:44] 2025-10-11 02:34:46,613 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1695.75
[2025-10-10 22:35:44] 2025-10-11 02:34:46,615 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837663710/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 22:35:44] 2025-10-11 02:34:46,616 | INFO     | extracted standard info from prmon json
[2025-10-10 22:35:44] 2025-10-11 02:34:46,616 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 22:35:44] 2025-10-11 02:34:46,617 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 22:35:44] 2025-10-11 02:34:46,617 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 22:35:44] 2025-10-11 02:34:46,617 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 22:35:44] 2025-10-11 02:34:46,620 | INFO     | fitting pss+swap vs Time
[2025-10-10 22:35:44] 2025-10-11 02:34:46,620 | INFO     | sum of square deviations: 81266640.0
[2025-10-10 22:35:44] 2025-10-11 02:34:46,620 | INFO     | sum of deviations: -6722627000.0
[2025-10-10 22:35:44] 2025-10-11 02:34:46,620 | INFO     | mean x: 1760148007.5
[2025-10-10 22:35:44] 2025-10-11 02:34:46,620 | INFO     | mean y: 2836496.25
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | -- intersect: 145607706086.22815
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | intersect: 145607706086.22815
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | chi2: 0.09472520412166141
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | -- intersect: 145607706086.22815
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | current memory leak: -82.72 B/s (using 64 data points, chi2=0.09)
[2025-10-10 22:35:44] 2025-10-11 02:34:46,621 | INFO     | could have reported an average CPU frequency of 2045 MHz (6 samples)
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | ..............................
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . Timing measurements:
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . get job = 0 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . initial setup = 2 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . payload setup = 7 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . stage-in = 0 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . payload execution = 4299 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . stage-out = 0 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,622 | INFO     | . log creation = 0 s
[2025-10-10 22:35:44] 2025-10-11 02:34:46,623 | INFO     | ..............................
[2025-10-10 22:35:44] 2025-10-11 02:34:47,087 | INFO     | 
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | job summary report
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | --------------------------------------------------
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | PanDA job id: 6837663710
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | task id: 46676269
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | errors: (none)
[2025-10-10 22:35:44] 2025-10-11 02:34:47,088 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | pilot state: finished 
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | transexitcode: 0
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | exeerrorcode: 0
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | exeerrordiag: 
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | exitcode: 0
[2025-10-10 22:35:44] 2025-10-11 02:34:47,089 | INFO     | exitmsg: OK
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | cpuconsumptiontime: 46368 s
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | nevents: 400
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | neventsw: 0
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | pid: 20918
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | pgrp: 20918
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | corecount: 12
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | event service: False
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4310: 2375196, 4311: 2384194, 4312: 2384378, 4319: 2384572}
[2025-10-10 22:35:44] 2025-10-11 02:34:47,090 | INFO     | --------------------------------------------------
[2025-10-10 22:35:44] 2025-10-11 02:34:47,091 | INFO     | 
[2025-10-10 22:35:44] 2025-10-11 02:34:47,091 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 22:35:44] 2025-10-11 02:34:47,115 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,115 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,115 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,116 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,117 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,118 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,118 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,118 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 22:35:44] 2025-10-11 02:34:47,118 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,118 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 22:35:44] 2025-10-11 02:34:47,119 | INFO     | job 6837663710 has completed (purged errors)
[2025-10-10 22:35:44] 2025-10-11 02:34:47,119 | INFO     | overall cleanup function is called
[2025-10-10 22:35:44] 2025-10-11 02:34:48,126 | INFO     | --- collectZombieJob: --- 10, [20918]
[2025-10-10 22:35:44] 2025-10-11 02:34:48,126 | INFO     | zombie collector waiting for pid 20918
[2025-10-10 22:35:44] 2025-10-11 02:34:48,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 22:35:44] 2025-10-11 02:34:48,130 | INFO     | collected zombie processes
[2025-10-10 22:35:44] 2025-10-11 02:34:48,130 | INFO     | will attempt to kill all subprocesses of pid=20918
[2025-10-10 22:35:44] 2025-10-11 02:34:48,220 | INFO     | process IDs to be killed: [20918] (in reverse order)
[2025-10-10 22:35:44] 2025-10-11 02:34:48,318 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 22:35:44] 2025-10-11 02:34:48,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 22:35:44] 2025-10-11 02:34:48,321 | INFO     | did not find any defunct processes belonging to 20918
[2025-10-10 22:35:44] 2025-10-11 02:34:48,323 | INFO     | did not find any defunct processes belonging to 20918
[2025-10-10 22:35:44] 2025-10-11 02:34:48,324 | INFO     | ready for new job
[2025-10-10 22:35:44] 2025-10-11 02:34:48,324 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 22:35:44] 2025-10-11 02:34:48,325 | INFO     | ***************************************
[2025-10-10 22:35:44] 2025-10-11 02:34:48,325 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 22:35:44] 2025-10-11 02:34:48,325 | INFO     | ***************************************
[2025-10-10 22:35:44] 2025-10-11 02:34:48,325 | INFO     | 
[2025-10-10 22:35:44] 2025-10-11 02:34:48,326 | INFO     | architecture information:
[2025-10-10 22:35:44] 2025-10-11 02:34:48,326 | INFO     | executing command: cat /etc/os-release
[2025-10-10 22:35:44] 2025-10-11 02:34:48,340 | INFO     | cat /etc/os-release:
[2025-10-10 22:35:44] NAME="CentOS Linux"
[2025-10-10 22:35:44] VERSION="7 (Core)"
[2025-10-10 22:35:44] ID="centos"
[2025-10-10 22:35:44] ID_LIKE="rhel fedora"
[2025-10-10 22:35:44] VERSION_ID="7"
[2025-10-10 22:35:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 22:35:44] ANSI_COLOR="0;31"
[2025-10-10 22:35:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 22:35:44] HOME_URL="https://www.centos.org/"
[2025-10-10 22:35:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 22:35:44] 
[2025-10-10 22:35:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 22:35:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 22:35:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 22:35:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 22:35:44] 
[2025-10-10 22:35:44] 2025-10-11 02:34:48,341 | INFO     | ***************************************
[2025-10-10 22:35:44] 2025-10-11 02:34:48,844 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 22:35:44] 2025-10-11 02:34:48,860 | INFO     | sufficient remaining disk space (29358030848 B)
[2025-10-10 22:35:44] 2025-10-11 02:34:48,860 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 22:35:44] 2025-10-11 02:34:48,861 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 22:35:44] 2025-10-11 02:34:48,861 | INFO     | update_server=False
[2025-10-10 22:35:44] 2025-10-11 02:34:48,861 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 22:35:44] 2025-10-11 02:34:48,861 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:35:44] 2025-10-11 02:34:48,862 | INFO     | aborting loop
[2025-10-10 22:35:44] 2025-10-11 02:34:49,420 | INFO     | all job control threads have been joined
[2025-10-10 22:35:44] 2025-10-11 02:34:49,481 | INFO     | all data control threads have been joined
[2025-10-10 22:35:44] 2025-10-11 02:34:49,540 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 22:35:44] 2025-10-11 02:34:49,863 | INFO     | [job] job monitor thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:49,867 | INFO     | [job] retrieve thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:49,893 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:49,993 | INFO     | [job] validate thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,086 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,237 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 22:35:44] 2025-10-11 02:34:50,275 | INFO     | all payload control threads have been joined
[2025-10-10 22:35:44] 2025-10-11 02:34:50,306 | INFO     | [payload] validate_post thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,422 | INFO     | [job] control thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,486 | INFO     | [data] control thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,597 | INFO     | [data] copytool_in thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:50,612 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:51,013 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:51,206 | INFO     | [payload] failed_post thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:51,281 | INFO     | [payload] control thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:51,546 | INFO     | [data] copytool_out thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:51,719 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:35:44] 2025-10-11 02:34:52,724 | INFO     | [job] queue monitor thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:34:54,243 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 22:35:44] 2025-10-11 02:35:18,950 | INFO     | PID=14556 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 22:35:44] 2025-10-11 02:35:18,950 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 22:35:44] 2025-10-11 02:35:18,950 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 22:35:44] 2025-10-11 02:35:18,950 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 22:35:44] 2025-10-11 02:35:38,745 | INFO     | [monitor] cgroup control has ended
[2025-10-10 22:35:44] 2025-10-11 02:35:38,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436462352192)>', '<ExcThread(monitor, started 140435850761984)>']
[2025-10-10 22:35:44] 2025-10-11 02:35:39,052 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 22:35:44] 2025-10-11 02:35:39,053 | INFO     | [monitor] control thread has ended
[2025-10-10 22:35:44] 2025-10-11 02:35:43,949 | INFO     | all workflow threads have been joined
[2025-10-10 22:35:44] 2025-10-11 02:35:43,955 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 22:35:44] 2025-10-11 02:35:43,956 | INFO     | traces error code: 0
[2025-10-10 22:35:44] 2025-10-11 02:35:43,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 22:35:44] 2025-10-11 02:35:44,065 [wrapper] ==== pilot stdout END ====
[2025-10-10 22:35:44] 2025-10-11 02:35:44,069 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 22:35:44] 2025-10-11 02:35:44,073 [wrapper] pilotpid: 14556
[2025-10-10 22:35:44] 2025-10-11 02:35:44,077 [wrapper] Pilot exit status: 0
[2025-10-10 22:35:44] 2025-10-11 02:35:44,094 [wrapper] pandaids: 6837663710
[2025-10-10 22:35:44] 2025-10-11 02:35:44,142 [wrapper] cleanup supervisor_pilot 23906 14557
[2025-10-10 22:35:44] 2025-10-11 02:35:44,146 [wrapper] Test setup, not cleaning
[2025-10-10 22:35:44] 2025-10-11 02:35:44,150 [wrapper] apfmon messages muted
[2025-10-10 22:35:44] 2025-10-11 02:35:44,154 [wrapper] ==== wrapper stdout END ====
[2025-10-10 22:35:44] 2025-10-11 02:35:44,158 [wrapper] ==== wrapper stderr END ====
[2025-10-10 22:35:44]  *** Error codes and diagnostics ***
[2025-10-10 22:35:44]     "exeErrorCode": 0,
[2025-10-10 22:35:44]     "exeErrorDiag": "",
[2025-10-10 22:35:44]     "pilotErrorCode": 0,
[2025-10-10 22:35:44]     "pilotErrorDiag": "",
[2025-10-10 22:35:44]  *** Listing of results directory ***
[2025-10-10 22:35:44] total 417252
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 10:46 pilot3.tar.gz
[2025-10-10 22:35:44] -rwx------ 1 boincer umatlas     36292 Oct 10 10:48 runpilot2-wrapper.sh
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 10:48 queuedata.json
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas       100 Oct 10 21:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 22:35:44] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 21:22 run_atlas
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas       105 Oct 10 21:22 job.xml
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas 221049142 Oct 10 21:22 EVNT.46676267._001638.pool.root.1
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 21:22 start_atlas.sh
[2025-10-10 22:35:44] drwxrwx--x 2 boincer umatlas      4096 Oct 10 21:22 shared
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas    569682 Oct 10 21:22 input.tar.gz
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas         0 Oct 10 21:22 boinc_lockfile
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 21:22 pandaJob.out
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas    975517 Oct 10 21:22 agis_schedconf.cvmfs.json
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas   1560580 Oct 10 21:22 agis_ddmendpoints.agis.ALL.json
[2025-10-10 22:35:44] drwx------ 5 boincer umatlas      4096 Oct 10 21:22 pilot3
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas      5953 Oct 10 22:31 init_data.xml
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas 200311811 Oct 10 22:34 HITS.46676269._040389.pool.root.1
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas       529 Oct 10 22:34 boinc_task_state.xml
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas        95 Oct 10 22:34 pilot_heartbeat.json
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas      1049 Oct 10 22:34 memory_monitor_summary.json
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas    371425 Oct 10 22:34 log.46676269._040389.job.log.tgz.1
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas      7857 Oct 10 22:34 heartbeat.json
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas        27 Oct 10 22:35 wrapper_checkpoint.txt
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 22:35 boinc_mmap_file
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas      4746 Oct 10 22:35 pilotlog.txt
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas    630391 Oct 10 22:35 log.46676269._040389.job.log.1
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas       357 Oct 10 22:35 output.list
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas       620 Oct 10 22:35 runtime_log
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas   1024000 Oct 10 22:35 result.tar.gz
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 22:35 runtime_log.err
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas       659 Oct 10 22:35 3NDODmzaTR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmB8PMDmHFsdWo.diag
[2025-10-10 22:35:44] -rw-r--r-- 1 boincer umatlas     21938 Oct 10 22:35 stderr.txt
[2025-10-10 22:35:44] HITS file was successfully produced:
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas 200311811 Oct 10 22:34 shared/HITS.pool.root.1
[2025-10-10 22:35:44]  *** Contents of shared directory: ***
[2025-10-10 22:35:44] total 413068
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas 221049142 Oct 10 21:22 ATLAS.root_0
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 21:22 start_atlas.sh
[2025-10-10 22:35:44] -rw-r--r-- 2 boincer umatlas    569682 Oct 10 21:22 input.tar.gz
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas 200311811 Oct 10 22:34 HITS.pool.root.1
[2025-10-10 22:35:44] -rw------- 1 boincer umatlas   1024000 Oct 10 22:35 result.tar.gz
22:35:46 (10879): run_atlas exited; CPU time 46337.642565
22:35:46 (10879): called boinc_finish(0)

</stderr_txt>
]]>

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