Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
04:51:01 (1646468): wrapper (7.7.26015): starting
04:51:01 (1646468): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 04:51:01] Arguments: --nthreads 12
[2025-10-11 04:51:01] Threads: 12
[2025-10-11 04:51:01] Checking for CVMFS
[2025-10-11 04:51:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:51:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:51:01] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:51:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:51:01] 2.13.2.0 2625769 1937 52636 151572 3 188 2097010 4096000 922 130560 4 9041582 99.998 66964 223 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 04:51:01] CVMFS is ok
[2025-10-11 04:51:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:51:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:51:01] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 04:51:01] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 04:51:01] Further information can be found at the LHC@home message board.
[2025-10-11 04:51:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:51:01] Checking for apptainer binary...
[2025-10-11 04:51:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:51:01] Running /usr/bin/apptainer --version
[2025-10-11 04:51:01] apptainer version 1.4.3
[2025-10-11 04:51:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:51:01] test-run
[2025-10-11 04:51:01] apptainer works
[2025-10-11 04:51:01] Set ATHENA_PROC_NUMBER=12
[2025-10-11 04:51:01] Set ATHENA_CORE_NUMBER=12
[2025-10-11 04:51:01] Starting ATLAS job with PandaID=6837669125
[2025-10-11 04:51:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 05:19:28]  *** The last 200 lines of the pilot log: ***
[2025-10-11 05:19:28] 2025-10-11 05:18:29,071 | INFO     |  -- lfn=log.46676269._041525.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 05:19:28] 2025-10-11 05:18:29,071 | INFO     | stage-out finished correctly
[2025-10-11 05:19:28] 2025-10-11 05:18:30,206 | INFO     | time since job start (1644s) is within the limit (172800.0s)
[2025-10-11 05:19:28] 2025-10-11 05:18:31,865 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 05:19:28] 2025-10-11 05:18:32,211 | INFO     | time since job start (1646s) is within the limit (172800.0s)
[2025-10-11 05:19:28] 2025-10-11 05:18:34,216 | INFO     | time since job start (1648s) is within the limit (172800.0s)
[2025-10-11 05:19:28] 2025-10-11 05:18:34,717 | INFO     | job 6837669125 has state=finished
[2025-10-11 05:19:28] 2025-10-11 05:18:34,717 | INFO     | preparing for final server update for job 6837669125 in state='finished'
[2025-10-11 05:19:28] 2025-10-11 05:18:34,718 | INFO     | this job has now completed (state=finished)
[2025-10-11 05:19:28] 2025-10-11 05:18:34,718 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 05:19:28] 2025-10-11 05:18:34,718 | INFO     | log transfer has been attempted: DONE
[2025-10-11 05:19:28] 2025-10-11 05:18:34,718 | INFO     | job 6837669125 has finished - writing final server update
[2025-10-11 05:19:28] 2025-10-11 05:18:34,718 | INFO     | total number of processed events: 400 (read)
[2025-10-11 05:19:28] 2025-10-11 05:18:34,719 | INFO     | executing command: lscpu
[2025-10-11 05:19:28] 2025-10-11 05:18:34,725 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 05:19:28] 2025-10-11 05:18:35,615 | WARNING  | process 1656966 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 05:19:28] 2025-10-11 05:18:35,615 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4278076 B
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15422 B
[2025-10-11 05:19:28] 2025-10-11 05:18:35,616 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-11 05:19:28] 2025-10-11 05:18:36,222 | INFO     | time since job start (1650s) is within the limit (172800.0s)
[2025-10-11 05:19:28] 2025-10-11 05:18:38,227 | INFO     | time since job start (1652s) is within the limit (172800.0s)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,366 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-11 05:19:28] 2025-10-11 05:18:39,369 | INFO     | found 32 cores (32 cores per socket, 1 socket) , CPU MHz: 4299.979999999998
[2025-10-11 05:19:28] 2025-10-11 05:18:39,371 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | INFO     | extracted standard info from prmon json
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | INFO     | fitting pss+swap vs Time
[2025-10-11 05:19:28] 2025-10-11 05:18:39,372 | INFO     | sum of square deviations: 2474465.0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | sum of deviations: -103579860.5
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | mean x: 1760159165.5
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | mean y: 2872431.95
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | -- intersect: 73682249921.74533
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | intersect: 73682249921.74533
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | chi2: 0.009788669199793869
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | -- intersect: 73682249921.74533
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | current memory leak: -41.86 B/s (using 20 data points, chi2=0.01)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | could have reported an average CPU frequency of 4299 MHz (4 samples)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | ..............................
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . Timing measurements:
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . get job = 0 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . initial setup = 2 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . payload setup = 1 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . stage-in = 0 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . payload execution = 1626 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,373 | INFO     | . stage-out = 0 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,374 | INFO     | sufficient remaining disk space (25985810432 B)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,374 | INFO     | . log creation = 0 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,374 | INFO     | ..............................
[2025-10-11 05:19:28] 2025-10-11 05:18:39,374 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,409 | INFO     | 
[2025-10-11 05:19:28] 2025-10-11 05:18:39,409 | INFO     | job summary report
[2025-10-11 05:19:28] 2025-10-11 05:18:39,409 | INFO     | --------------------------------------------------
[2025-10-11 05:19:28] 2025-10-11 05:18:39,409 | INFO     | PanDA job id: 6837669125
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | task id: 46676269
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | errors: (none)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | pilot state: finished 
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | transexitcode: 0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | exeerrorcode: 0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | exeerrordiag: 
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | exitcode: 0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | exitmsg: OK
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | cpuconsumptiontime: 15454 s
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | nevents: 400
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | neventsw: 0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | pid: 1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | pgrp: 1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | corecount: 12
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | event service: False
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | sizes: {0: 2348864, 1: 2349126, 11: 2349154, 1630: 2373980, 1631: 2382992, 1633: 2383048, 1641: 2383370}
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | --------------------------------------------------
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | 
[2025-10-11 05:19:28] 2025-10-11 05:18:39,410 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2025-10-11 05:19:28] 2025-10-11 05:18:39,412 | INFO     | size of work directory /var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125: 4555698 B (within 2537553920 B limit)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,413 | INFO     | pfn file=/var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125/HITS.46676269._041525.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,413 | INFO     | total size of present files: 0 B (workdir size: 4555698 B)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,413 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/0/PanDA_Pilot-6837669125/HITS.46676269._041525.pool.root.1 since it does not exist
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,418 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | job 6837669125 has completed (purged errors)
[2025-10-11 05:19:28] 2025-10-11 05:18:39,419 | INFO     | overall cleanup function is called
[2025-10-11 05:19:28] 2025-10-11 05:18:39,441 | INFO     | number of running child processes to parent process 1656966: 1
[2025-10-11 05:19:28] 2025-10-11 05:18:39,442 | INFO     | maximum number of monitored processes: 6
[2025-10-11 05:19:28] 2025-10-11 05:18:39,442 | INFO     | aborting job monitoring since job object (job id=6837669125) has expired
[2025-10-11 05:19:28] 2025-10-11 05:18:40,423 | INFO     | --- collectZombieJob: --- 10, [1656966]
[2025-10-11 05:19:28] 2025-10-11 05:18:40,424 | INFO     | zombie collector waiting for pid 1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:40,424 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 05:19:28] 2025-10-11 05:18:40,424 | INFO     | collected zombie processes
[2025-10-11 05:19:28] 2025-10-11 05:18:40,424 | INFO     | will attempt to kill all subprocesses of pid=1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:40,453 | INFO     | process IDs to be killed: [1656966] (in reverse order)
[2025-10-11 05:19:28] 2025-10-11 05:18:40,470 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 05:19:28] 2025-10-11 05:18:40,470 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 05:19:28] 2025-10-11 05:18:40,472 | INFO     | did not find any defunct processes belonging to 1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:40,472 | INFO     | did not find any defunct processes belonging to 1656966
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | ready for new job
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | ***************************************
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | ***************************************
[2025-10-11 05:19:28] 2025-10-11 05:18:40,473 | INFO     | 
[2025-10-11 05:19:28] 2025-10-11 05:18:40,474 | INFO     | pilot is running in a VM
[2025-10-11 05:19:28] 2025-10-11 05:18:40,474 | INFO     | architecture information:
[2025-10-11 05:19:28] 2025-10-11 05:18:40,474 | INFO     | executing command: cat /etc/os-release
[2025-10-11 05:19:28] 2025-10-11 05:18:40,482 | INFO     | cat /etc/os-release:
[2025-10-11 05:19:28] NAME="CentOS Linux"
[2025-10-11 05:19:28] VERSION="7 (Core)"
[2025-10-11 05:19:28] ID="centos"
[2025-10-11 05:19:28] ID_LIKE="rhel fedora"
[2025-10-11 05:19:28] VERSION_ID="7"
[2025-10-11 05:19:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 05:19:28] ANSI_COLOR="0;31"
[2025-10-11 05:19:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 05:19:28] HOME_URL="https://www.centos.org/"
[2025-10-11 05:19:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 05:19:28] 
[2025-10-11 05:19:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 05:19:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 05:19:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 05:19:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 05:19:28] 
[2025-10-11 05:19:28] 2025-10-11 05:18:40,482 | INFO     | ***************************************
[2025-10-11 05:19:28] 2025-10-11 05:18:40,985 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | INFO     | sufficient remaining disk space (25990004736 B)
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | INFO     | update_server=False
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 05:19:28] 2025-10-11 05:18:41,003 | INFO     | aborting loop
[2025-10-11 05:19:28] 2025-10-11 05:18:41,241 | INFO     | all job control threads have been joined
[2025-10-11 05:19:28] 2025-10-11 05:18:41,406 | INFO     | all data control threads have been joined
[2025-10-11 05:19:28] 2025-10-11 05:18:42,008 | INFO     | [job] queue monitor thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,009 | INFO     | [job] retrieve thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,009 | INFO     | [job] job monitor thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,022 | INFO     | all payload control threads have been joined
[2025-10-11 05:19:28] 2025-10-11 05:18:42,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 05:19:28] 2025-10-11 05:18:42,246 | INFO     | [job] control thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,395 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 05:19:28] 2025-10-11 05:18:42,406 | INFO     | [data] control thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,710 | INFO     | [payload] validate_post thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,783 | INFO     | [data] copytool_in thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,830 | INFO     | [payload] failed_post thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,885 | INFO     | [job] validate thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,913 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:42,970 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:43,027 | INFO     | [payload] control thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:43,375 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:44,111 | INFO     | [data] copytool_out thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:46,400 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:18:51,223 | INFO     | job.realtimelogging is not enabled
[2025-10-11 05:19:28] 2025-10-11 05:18:52,229 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 05:19:28] 2025-10-11 05:19:08,471 | INFO     | [monitor] cgroup control has ended
[2025-10-11 05:19:28] 2025-10-11 05:19:10,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135709055883072)>', '<ExcThread(monitor, started 135708350084864)>']
[2025-10-11 05:19:28] 2025-10-11 05:19:11,314 | INFO     | PID=1650317 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | INFO     | .. there are 2 such processes running
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 05:19:28] 2025-10-11 05:19:11,315 | INFO     | [monitor] control thread has ended
[2025-10-11 05:19:28] 2025-10-11 05:19:15,490 | INFO     | all workflow threads have been joined
[2025-10-11 05:19:28] 2025-10-11 05:19:15,490 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 05:19:28] 2025-10-11 05:19:15,490 | INFO     | traces error code: 0
[2025-10-11 05:19:28] 2025-10-11 05:19:15,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 05:19:28] 2025-10-11 05:19:15,517 [wrapper] ==== pilot stdout END ====
[2025-10-11 05:19:28] 2025-10-11 05:19:15,518 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 05:19:28] 2025-10-11 05:19:15,519 [wrapper] pilotpid: 1650317
[2025-10-11 05:19:28] 2025-10-11 05:19:15,520 [wrapper] Pilot exit status: 0
[2025-10-11 05:19:28] 2025-10-11 05:19:15,523 [wrapper] pandaids: 6837669125
[2025-10-11 05:19:28] 2025-10-11 05:19:15,529 [wrapper] cleanup supervisor_pilot 1683294 1650318
[2025-10-11 05:19:28] 2025-10-11 05:19:15,530 [wrapper] Test setup, not cleaning
[2025-10-11 05:19:28] 2025-10-11 05:19:15,530 [wrapper] apfmon messages muted
[2025-10-11 05:19:28] 2025-10-11 05:19:15,531 [wrapper] ==== wrapper stdout END ====
[2025-10-11 05:19:28] 2025-10-11 05:19:15,531 [wrapper] ==== wrapper stderr END ====
[2025-10-11 05:19:28]  *** Error codes and diagnostics ***
[2025-10-11 05:19:28]     "exeErrorCode": 0,
[2025-10-11 05:19:28]     "exeErrorDiag": "",
[2025-10-11 05:19:28]     "pilotErrorCode": 0,
[2025-10-11 05:19:28]     "pilotErrorDiag": "",
[2025-10-11 05:19:28]  *** Listing of results directory ***
[2025-10-11 05:19:28] total 415076
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc    557409 Oct 10 16:15 pilot3.tar.gz
[2025-10-11 05:19:28] -rwx------ 1 boinc boinc     36292 Oct 10 16:33 runpilot2-wrapper.sh
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc      5112 Oct 10 16:33 queuedata.json
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc       100 Oct 11 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 05:19:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 04:51 run_atlas
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc       105 Oct 11 04:51 job.xml
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:51 start_atlas.sh
[2025-10-11 05:19:28] drwxrwx--x 2 boinc boinc      4096 Oct 11 04:51 shared
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc    569678 Oct 11 04:51 input.tar.gz
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc      6938 Oct 11 04:51 init_data.xml
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc 220424322 Oct 11 04:51 EVNT.46676267._001683.pool.root.1
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:51 boinc_lockfile
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc      2550 Oct 11 04:51 pandaJob.out
[2025-10-11 05:19:28] -rw------- 1 boinc boinc    975517 Oct 11 04:51 agis_schedconf.cvmfs.json
[2025-10-11 05:19:28] -rw------- 1 boinc boinc   1560580 Oct 11 04:51 agis_ddmendpoints.agis.ALL.json
[2025-10-11 05:19:28] drwx------ 5 boinc boinc      4096 Oct 11 04:51 pilot3
[2025-10-11 05:19:28] -rw------- 1 boinc boinc 199451980 Oct 11 05:18 HITS.46676269._041525.pool.root.1
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc       529 Oct 11 05:18 boinc_task_state.xml
[2025-10-11 05:19:28] -rw------- 1 boinc boinc      1022 Oct 11 05:18 memory_monitor_summary.json
[2025-10-11 05:19:28] -rw------- 1 boinc boinc    342709 Oct 11 05:18 log.46676269._041525.job.log.tgz.1
[2025-10-11 05:19:28] -rw------- 1 boinc boinc      7735 Oct 11 05:18 heartbeat.json
[2025-10-11 05:19:28] -rw------- 1 boinc boinc        95 Oct 11 05:19 pilot_heartbeat.json
[2025-10-11 05:19:28] -rw------- 1 boinc boinc      4964 Oct 11 05:19 pilotlog.txt
[2025-10-11 05:19:28] -rw------- 1 boinc boinc    285499 Oct 11 05:19 log.46676269._041525.job.log.1
[2025-10-11 05:19:28] -rw------- 1 boinc boinc       357 Oct 11 05:19 output.list
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc       620 Oct 11 05:19 runtime_log
[2025-10-11 05:19:28] -rw------- 1 boinc boinc    645120 Oct 11 05:19 result.tar.gz
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc      8762 Oct 11 05:19 runtime_log.err
[2025-10-11 05:19:28] -rw------- 1 boinc boinc       642 Oct 11 05:19 duYLDm2EVR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmMqdNDm6uF2No.diag
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc      8192 Oct 11 05:19 boinc_mmap_file
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc        27 Oct 11 05:19 wrapper_checkpoint.txt
[2025-10-11 05:19:28] -rw-r--r-- 1 boinc boinc     22563 Oct 11 05:19 stderr.txt
[2025-10-11 05:19:28] HITS file was successfully produced:
[2025-10-11 05:19:28] -rw------- 1 boinc boinc 199451980 Oct 11 05:18 shared/HITS.pool.root.1
[2025-10-11 05:19:28]  *** Contents of shared directory: ***
[2025-10-11 05:19:28] total 411256
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:51 start_atlas.sh
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc    569678 Oct 11 04:51 input.tar.gz
[2025-10-11 05:19:28] -rw-r--r-- 2 boinc boinc 220424322 Oct 11 04:51 ATLAS.root_0
[2025-10-11 05:19:28] -rw------- 1 boinc boinc 199451980 Oct 11 05:18 HITS.pool.root.1
[2025-10-11 05:19:28] -rw------- 1 boinc boinc    645120 Oct 11 05:19 result.tar.gz
05:19:30 (1646468): run_atlas exited; CPU time 15458.115707
05:19:30 (1646468): called boinc_finish(0)

</stderr_txt>
]]>

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