Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:32:36 (1053170): wrapper (7.7.26015): starting
17:32:36 (1053170): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 17:32:36] Arguments: --nthreads 12
[2025-10-10 17:32:36] Threads: 12
[2025-10-10 17:32:36] Checking for CVMFS
[2025-10-10 17:32:36] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 17:32:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 17:32:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 17:32:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 17:32:37] 2.11.5.0 2896 29299 227764 151566 2 614 33921735 45568001 21727 130560 0 263275289 99.846 125685759 29481 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-10 17:32:37] CVMFS is ok
[2025-10-10 17:32:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 17:32:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 17:32:37] Further information can be found at the LHC@home message board.
[2025-10-10 17:32:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 17:32:37] Checking for apptainer binary...
[2025-10-10 17:32:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 17:32:37] Running /usr/bin/apptainer --version
[2025-10-10 17:32:37] apptainer version 1.4.1-1.el9
[2025-10-10 17:32:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 17:32:38] wns0093.triumf.lcg
[2025-10-10 17:32:38] apptainer works
[2025-10-10 17:32:38] Set ATHENA_PROC_NUMBER=12
[2025-10-10 17:32:38] Set ATHENA_CORE_NUMBER=12
[2025-10-10 17:32:38] Starting ATLAS job with PandaID=6837828535
[2025-10-10 17:32:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:37:25]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | wrong length of table data, x=[1760142855.0], y=[837.0] (must be same and length>=4)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | could have reported an average CPU frequency of 2713 MHz (4 samples)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . Timing measurements:
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . get job = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . initial setup = 3 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload setup = 16 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-in = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload execution = 40 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-out = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . log creation = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837828535/pilotlog.txt
[2025-10-10 17:37:25] 2025-10-11 00:36:52,620 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 17:37:25] - Log from pilotlog.txt -
[2025-10-10 17:37:25] 2025-10-11 00:36:52,601 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837828535/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | INFO     | extracted standard info from prmon json
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | wrong length of table data, x=[1760142855.0], y=[837.0] (must be same and length>=4)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | could have reported an average CPU frequency of 2713 MHz (4 samples)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . Timing measurements:
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . get job = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . initial setup = 3 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload setup = 16 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-in = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload execution = 40 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-out = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . log creation = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837828535/pilotlog.txt
[2025-10-10 17:37:25] 2025-10-11 00:36:52,620 | WARNING  | 
[2025-10-10 17:37:25] [begin log extracts]
[2025-10-10 17:37:25] - Log from pilotlog.txt -
[2025-10-10 17:37:25] 2025-10-11 00:36:52,601 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837828535/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | INFO     | extracted standard info from prmon json
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:37:25] 2025-10-11 00:36:52,602 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | WARNING  | wrong length of table data, x=[1760142855.0], y=[837.0] (must be same and length>=4)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | could have reported an average CPU frequency of 2713 MHz (4 samples)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . Timing measurements:
[2025-10-10 17:37:25] 2025-10-11 00:36:52,603 | INFO     | . get job = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . initial setup = 3 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload setup = 16 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-in = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . payload execution = 40 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . stage-out = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | . log creation = 0 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | ..............................
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 17:37:25] 2025-10-11 00:36:52,604 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837828535/pilotlog.txt
[2025-10-10 17:37:25] [end log extracts]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,620 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,621 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-10 17:37:25] 2025-10-11 00:36:52,794 | INFO     | 
[2025-10-10 17:37:25] 2025-10-11 00:36:52,794 | INFO     | job summary report
[2025-10-10 17:37:25] 2025-10-11 00:36:52,794 | INFO     | --------------------------------------------------
[2025-10-10 17:37:25] 2025-10-11 00:36:52,794 | INFO     | PanDA job id: 6837828535
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | task id: 46676269
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 17:34:32,634 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | pilot state: failed 
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | transexitcode: 65
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | exeerrorcode: 65
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | exitcode: 65
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | cpuconsumptiontime: 17 s
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | nevents: 0
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | neventsw: 0
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | pid: 1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | pgrp: 1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | corecount: 12
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | event service: False
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | sizes: {0: 2348683, 1: 2348882, 12: 2348882, 14: 2349172, 22: 2349200, 61: 2372618, 62: 2376938, 193: 2377076}
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | --------------------------------------------------
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | 
[2025-10-10 17:37:25] 2025-10-11 00:36:52,795 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-10 17:37:25] 2025-10-11 00:36:52,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,852 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | job 6837828535 has completed (purged errors)
[2025-10-10 17:37:25] 2025-10-11 00:36:52,853 | INFO     | overall cleanup function is called
[2025-10-10 17:37:25] 2025-10-11 00:36:53,863 | INFO     | --- collectZombieJob: --- 10, [1070944]
[2025-10-10 17:37:25] 2025-10-11 00:36:53,863 | INFO     | zombie collector waiting for pid 1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:53,863 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:37:25] 2025-10-11 00:36:53,863 | INFO     | collected zombie processes
[2025-10-10 17:37:25] 2025-10-11 00:36:53,864 | INFO     | will attempt to kill all subprocesses of pid=1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:54,623 | INFO     | process IDs to be killed: [1070944] (in reverse order)
[2025-10-10 17:37:25] 2025-10-11 00:36:54,771 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:37:25] 2025-10-11 00:36:54,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:37:25] 2025-10-11 00:36:54,839 | INFO     | did not find any defunct processes belonging to 1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:54,877 | INFO     | did not find any defunct processes belonging to 1070944
[2025-10-10 17:37:25] 2025-10-11 00:36:54,877 | INFO     | ready for new job
[2025-10-10 17:37:25] 2025-10-11 00:36:54,877 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:37:25] 2025-10-11 00:36:54,878 | INFO     | ***************************************
[2025-10-10 17:37:25] 2025-10-11 00:36:54,878 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:37:25] 2025-10-11 00:36:54,879 | INFO     | ***************************************
[2025-10-10 17:37:25] 2025-10-11 00:36:54,879 | INFO     | 
[2025-10-10 17:37:25] 2025-10-11 00:36:54,886 | INFO     | architecture information:
[2025-10-10 17:37:25] 2025-10-11 00:36:54,890 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:37:25] 2025-10-11 00:36:54,930 | INFO     | cat /etc/os-release:
[2025-10-10 17:37:25] NAME="CentOS Linux"
[2025-10-10 17:37:25] VERSION="7 (Core)"
[2025-10-10 17:37:25] ID="centos"
[2025-10-10 17:37:25] ID_LIKE="rhel fedora"
[2025-10-10 17:37:25] VERSION_ID="7"
[2025-10-10 17:37:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:37:25] ANSI_COLOR="0;31"
[2025-10-10 17:37:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:37:25] HOME_URL="https://www.centos.org/"
[2025-10-10 17:37:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:37:25] 
[2025-10-10 17:37:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:37:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:37:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:37:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:37:25] 
[2025-10-10 17:37:25] 2025-10-11 00:36:54,931 | INFO     | ***************************************
[2025-10-10 17:37:25] 2025-10-11 00:36:55,434 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-10 17:37:25] 2025-10-11 00:36:55,452 | INFO     | sufficient remaining disk space (1818204569600 B)
[2025-10-10 17:37:25] 2025-10-11 00:36:55,453 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:37:25] 2025-10-11 00:36:55,453 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:37:25] 2025-10-11 00:36:55,453 | INFO     | update_server=False
[2025-10-10 17:37:25] 2025-10-11 00:36:55,453 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:37:25] 2025-10-11 00:36:55,453 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:37:25] 2025-10-11 00:36:55,511 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 17:37:25] 2025-10-11 00:36:55,512 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 17:37:25] 2025-10-11 00:36:55,512 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:37:25] 2025-10-11 00:36:55,512 | INFO     | will abort loop
[2025-10-10 17:37:25] 2025-10-11 00:36:55,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:37:25] 2025-10-11 00:36:55,644 | INFO     | all data control threads have been joined
[2025-10-10 17:37:25] 2025-10-11 00:36:55,796 | INFO     | all job control threads have been joined
[2025-10-10 17:37:25] 2025-10-11 00:36:56,362 | INFO     | all payload control threads have been joined
[2025-10-10 17:37:25] 2025-10-11 00:36:56,459 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,529 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,629 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,652 | INFO     | [data] control thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,802 | INFO     | [job] control thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,859 | INFO     | [job] validate thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:56,943 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,071 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,073 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,369 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,370 | INFO     | [payload] control thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,437 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,457 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,519 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:57,728 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:37:25] 2025-10-11 00:36:58,734 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:36:59,462 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:37:25] 2025-10-11 00:37:04,841 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:37:25] 2025-10-11 00:37:05,014 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933475841856)>', '<ExcThread(monitor, started 139933071152896)>']
[2025-10-10 17:37:25] 2025-10-11 00:37:10,040 | INFO     | all workflow threads have been joined
[2025-10-10 17:37:25] 2025-10-11 00:37:10,040 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:37:25] 2025-10-11 00:37:10,041 | INFO     | traces error code: 0
[2025-10-10 17:37:25] 2025-10-11 00:37:10,041 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:37:25] 2025-10-11 00:37:24,847 | INFO     | PID=1063448 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 17:37:25] 2025-10-11 00:37:24,847 | INFO     | .. there are 42 such processes running
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | CRITICAL | thread 'MainThread' is not alive
[2025-10-10 17:37:25] 2025-10-11 00:37:24,848 | INFO     | [monitor] control thread has ended
[2025-10-10 17:37:25] 2025-10-11 00:37:24,966 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:37:25] 2025-10-11 00:37:24,968 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:37:25] 2025-10-11 00:37:24,969 [wrapper] pilotpid: 1063448
[2025-10-10 17:37:25] 2025-10-11 00:37:24,971 [wrapper] Pilot exit status: 0
[2025-10-10 17:37:25] 2025-10-11 00:37:24,980 [wrapper] pandaids: 6837828535
[2025-10-10 17:37:25] 2025-10-11 00:37:25,031 [wrapper] cleanup supervisor_pilot 1063460 1063449
[2025-10-10 17:37:25] 2025-10-11 00:37:25,033 [wrapper] Test setup, not cleaning
[2025-10-10 17:37:25] 2025-10-11 00:37:25,035 [wrapper] apfmon messages muted
[2025-10-10 17:37:25] 2025-10-11 00:37:25,037 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:37:25] 2025-10-11 00:37:25,038 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:37:25]  *** Error codes and diagnostics ***
[2025-10-10 17:37:25]     "exeErrorCode": 65,
[2025-10-10 17:37:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 17:37:25]     "pilotErrorCode": 1305,
[2025-10-10 17:37:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 17:37:25]  *** Listing of results directory ***
[2025-10-10 17:37:25] total 222136
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc      5112 Oct 10 14:48 queuedata.json
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc    557409 Oct 10 14:48 pilot3.tar.gz
[2025-10-10 17:37:25] -rwx------. 1 boinc boinc     36292 Oct 10 14:56 runpilot2-wrapper.sh
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc       100 Oct 10 17:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:37:25] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 17:32 run_atlas
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc       105 Oct 10 17:32 job.xml
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc 223337170 Oct 10 17:32 EVNT.46676267._001859.pool.root.1
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc      6594 Oct 10 17:32 init_data.xml
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc     15120 Oct 10 17:32 start_atlas.sh
[2025-10-10 17:37:25] drwxrwx--x. 2 boinc boinc      4096 Oct 10 17:32 shared
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc    569684 Oct 10 17:32 input.tar.gz
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc         0 Oct 10 17:32 boinc_lockfile
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc      2550 Oct 10 17:32 pandaJob.out
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc    975525 Oct 10 17:33 agis_schedconf.cvmfs.json
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc   1560580 Oct 10 17:33 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:37:25] drwx------. 5 boinc boinc      4096 Oct 10 17:33 pilot3
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc       959 Oct 10 17:34 memory_monitor_summary.json
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc     21480 Oct 10 17:34 log.46676269._045996.job.log.tgz.1
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc      8405 Oct 10 17:36 heartbeat.json
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc       523 Oct 10 17:37 boinc_task_state.xml
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc      8192 Oct 10 17:37 boinc_mmap_file
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc        95 Oct 10 17:37 pilot_heartbeat.json
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc       893 Oct 10 17:37 pilotlog.txt
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc        22 Oct 10 17:37 wrapper_checkpoint.txt
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc     90978 Oct 10 17:37 log.46676269._045996.job.log.1
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc       188 Oct 10 17:37 output.list
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc       620 Oct 10 17:37 runtime_log
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc    133120 Oct 10 17:37 result.tar.gz
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc       644 Oct 10 17:37 ssZMDmjHaR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzYeNDmIU2O1m.diag
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc      8528 Oct 10 17:37 runtime_log.err
[2025-10-10 17:37:25] -rw-r--r--. 1 boinc boinc     21808 Oct 10 17:37 stderr.txt
[2025-10-10 17:37:25] No HITS result produced
[2025-10-10 17:37:25]  *** Contents of shared directory: ***
[2025-10-10 17:37:25] total 218816
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc 223337170 Oct 10 17:32 ATLAS.root_0
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc     15120 Oct 10 17:32 start_atlas.sh
[2025-10-10 17:37:25] -rw-r--r--. 2 boinc boinc    569684 Oct 10 17:32 input.tar.gz
[2025-10-10 17:37:25] -rw-------. 1 boinc boinc    133120 Oct 10 17:37 result.tar.gz
17:37:26 (1053170): run_atlas exited; CPU time 26.529794
17:37:26 (1053170): called boinc_finish(0)

</stderr_txt>
]]>

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