Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:51:31 (3011197): wrapper (7.7.26015): starting
20:51:31 (3011197): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 20:51:31] Arguments: --nthreads 4
[2025-10-11 20:51:31] Threads: 4
[2025-10-11 20:51:31] Checking for CVMFS
[2025-10-11 20:51:31] No cvmfs_config command found, will try listing directly
[2025-10-11 20:51:31] CVMFS is ok
[2025-10-11 20:51:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 20:51:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 20:51:31] Further information can be found at the LHC@home message board.
[2025-10-11 20:51:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 20:51:31] Checking for apptainer binary...
[2025-10-11 20:51:31] which: no apptainer in ((null))
[2025-10-11 20:51:31] apptainer is not installed, using version from CVMFS
[2025-10-11 20:51:31] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 20:51:31] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-10-11 20:51:31] apptainer works
[2025-10-11 20:51:31] Set ATHENA_PROC_NUMBER=4
[2025-10-11 20:51:31] Set ATHENA_CORE_NUMBER=4
[2025-10-11 20:51:31] Starting ATLAS job with PandaID=6839573144
[2025-10-11 20:51:31] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:23:53 (3309664): wrapper (7.7.26015): starting
23:23:53 (3309664): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 23:23:53] Arguments: --nthreads 4
[2025-10-11 23:23:53] Threads: 4
[2025-10-11 23:23:53] This job has been restarted, cleaning up previous attempt
[2025-10-11 23:23:53] Checking for CVMFS
[2025-10-11 23:23:53] No cvmfs_config command found, will try listing directly
[2025-10-11 23:23:53] CVMFS is ok
[2025-10-11 23:23:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 23:23:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 23:23:53] Further information can be found at the LHC@home message board.
[2025-10-11 23:23:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 23:23:53] Checking for apptainer binary...
[2025-10-11 23:23:53] which: no apptainer in ((null))
[2025-10-11 23:23:53] apptainer is not installed, using version from CVMFS
[2025-10-11 23:23:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 23:23:53] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-10-11 23:23:53] apptainer works
[2025-10-11 23:23:53] Set ATHENA_PROC_NUMBER=4
[2025-10-11 23:23:53] Set ATHENA_CORE_NUMBER=4
[2025-10-11 23:23:53] Starting ATLAS job with PandaID=6839573144
[2025-10-11 23:23:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-12 02:15:07]  *** The last 200 lines of the pilot log: ***
[2025-10-12 02:15:07] 2025-10-12 00:11:13,508 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-12 02:15:07] 2025-10-12 00:11:13,517 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2722.2749062499997
[2025-10-12 02:15:07] 2025-10-12 00:11:13,529 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6839573144/memory_monitor_summary.json (trf name=prmon)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,530 | INFO     | extracted standard info from prmon json
[2025-10-12 02:15:07] 2025-10-12 00:11:13,530 | INFO     | extracted standard memory fields from prmon json
[2025-10-12 02:15:07] 2025-10-12 00:11:13,531 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-12 02:15:07] 2025-10-12 00:11:13,531 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-12 02:15:07] 2025-10-12 00:11:13,531 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-12 02:15:07] 2025-10-12 00:11:13,535 | INFO     | fitting pss+swap vs Time
[2025-10-12 02:15:07] 2025-10-12 00:11:13,535 | INFO     | sum of square deviations: 1367709365.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,536 | INFO     | sum of deviations: 10321625017.499998
[2025-10-12 02:15:07] 2025-10-12 00:11:13,536 | INFO     | mean x: 1760222843.5
[2025-10-12 02:15:07] 2025-10-12 00:11:13,536 | INFO     | mean y: 2324804.5426829266
[2025-10-12 02:15:07] 2025-10-12 00:11:13,536 | INFO     | -- intersect: -13281462382.104668
[2025-10-12 02:15:07] 2025-10-12 00:11:13,536 | INFO     | intersect: -13281462382.104668
[2025-10-12 02:15:07] 2025-10-12 00:11:13,537 | INFO     | chi2: 1.3992429870190841
[2025-10-12 02:15:07] 2025-10-12 00:11:13,537 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,538 | INFO     | sum of deviations: 10060535348.999998
[2025-10-12 02:15:07] 2025-10-12 00:11:13,538 | INFO     | mean x: 1760222691.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,538 | INFO     | mean y: 2324476.2641509436
[2025-10-12 02:15:07] 2025-10-12 00:11:13,538 | INFO     | -- intersect: -14205778255.651134
[2025-10-12 02:15:07] 2025-10-12 00:11:13,538 | INFO     | intersect: -14205778255.651134
[2025-10-12 02:15:07] 2025-10-12 00:11:13,539 | INFO     | chi2: 1.4004443660750743
[2025-10-12 02:15:07] 2025-10-12 00:11:13,539 | INFO     | current chi2=1.4004443660750743 (change=-0.08585921581422755 %)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,539 | INFO     | right removable region: 158
[2025-10-12 02:15:07] 2025-10-12 00:11:13,539 | INFO     | sum of square deviations: 1246386160.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,540 | INFO     | sum of deviations: -11323812775.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,540 | INFO     | mean x: 1760222996.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,540 | INFO     | mean y: 2351609.5283018867
[2025-10-12 02:15:07] 2025-10-12 00:11:13,540 | INFO     | -- intersect: 15994534681.389091
[2025-10-12 02:15:07] 2025-10-12 00:11:13,540 | INFO     | intersect: 15994534681.389091
[2025-10-12 02:15:07] 2025-10-12 00:11:13,541 | INFO     | chi2: 0.03448535094853061
[2025-10-12 02:15:07] 2025-10-12 00:11:13,541 | INFO     | current chi2=0.03448535094853061 (change=97.5354279943902 %)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,541 | INFO     | sum of square deviations: 1132458442.5
[2025-10-12 02:15:07] 2025-10-12 00:11:13,542 | INFO     | sum of deviations: -11407266142.999996
[2025-10-12 02:15:07] 2025-10-12 00:11:13,542 | INFO     | mean x: 1760223148.5
[2025-10-12 02:15:07] 2025-10-12 00:11:13,542 | INFO     | mean y: 2351696.012987013
[2025-10-12 02:15:07] 2025-10-12 00:11:13,542 | INFO     | -- intersect: 17733098514.13201
[2025-10-12 02:15:07] 2025-10-12 00:11:13,542 | INFO     | intersect: 17733098514.13201
[2025-10-12 02:15:07] 2025-10-12 00:11:13,543 | INFO     | chi2: 0.029622739078654932
[2025-10-12 02:15:07] 2025-10-12 00:11:13,543 | INFO     | current chi2=0.029622739078654932 (change=14.100514381115417 %)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,543 | INFO     | left removable region: 20
[2025-10-12 02:15:07] 2025-10-12 00:11:13,543 | INFO     | sum of square deviations: 814878534.5
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | sum of deviations: -8683382025.0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | mean x: 1760223270.5
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | mean y: 2348733.913043478
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | -- intersect: 18759366448.737156
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | intersect: 18759366448.737156
[2025-10-12 02:15:07] 2025-10-12 00:11:13,544 | INFO     | chi2: 0.028335163090984612
[2025-10-12 02:15:07] 2025-10-12 00:11:13,545 | INFO     | -- intersect: 18759366448.737156
[2025-10-12 02:15:07] 2025-10-12 00:11:13,545 | INFO     | current memory leak: -10.66 B/s (using 138 data points, chi2=0.03)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,545 | INFO     | could have reported an average CPU frequency of 2633 MHz (9 samples)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,545 | INFO     | ..............................
[2025-10-12 02:15:07] 2025-10-12 00:11:13,545 | INFO     | . Timing measurements:
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . get job = 0 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . initial setup = 1 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . payload setup = 5 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . stage-in = 0 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . payload execution = 9988 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . stage-out = 1 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | . log creation = 0 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,546 | INFO     | ..............................
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | 
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | job summary report
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | --------------------------------------------------
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | PanDA job id: 6839573144
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | task id: 46376905
[2025-10-12 02:15:07] 2025-10-12 00:11:13,695 | INFO     | errors: (none)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | pilot state: finished 
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | transexitcode: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | exeerrorcode: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | exeerrordiag: 
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | exitcode: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | exitmsg: OK
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | cpuconsumptiontime: 38407 s
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | nevents: 400
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | neventsw: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,696 | INFO     | pid: 3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | pgrp: 3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | corecount: 4
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | event service: False
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | sizes: {0: 2348775, 5: 2349037, 11: 2349093, 9998: 2377782, 9999: 2377781, 10000: 2386857, 10004: 2387041, 10013: 2387299}
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | --------------------------------------------------
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | 
[2025-10-12 02:15:07] 2025-10-12 00:11:13,697 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,718 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,719 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,720 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-12 02:15:07] 2025-10-12 00:11:13,720 | INFO     | job 6839573144 has completed (purged errors)
[2025-10-12 02:15:07] 2025-10-12 00:11:13,720 | INFO     | overall cleanup function is called
[2025-10-12 02:15:07] 2025-10-12 00:11:14,728 | INFO     | --- collectZombieJob: --- 10, [3326645]
[2025-10-12 02:15:07] 2025-10-12 00:11:14,728 | INFO     | zombie collector waiting for pid 3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:14,728 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-12 02:15:07] 2025-10-12 00:11:14,728 | INFO     | collected zombie processes
[2025-10-12 02:15:07] 2025-10-12 00:11:14,728 | INFO     | will attempt to kill all subprocesses of pid=3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:15,162 | INFO     | process IDs to be killed: [3326645] (in reverse order)
[2025-10-12 02:15:07] 2025-10-12 00:11:15,276 | WARNING  | found no corresponding commands to process id(s)
[2025-10-12 02:15:07] 2025-10-12 00:11:15,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-12 02:15:07] 2025-10-12 00:11:15,289 | INFO     | did not find any defunct processes belonging to 3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:15,301 | INFO     | did not find any defunct processes belonging to 3326645
[2025-10-12 02:15:07] 2025-10-12 00:11:15,302 | INFO     | ready for new job
[2025-10-12 02:15:07] 2025-10-12 00:11:15,302 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-12 02:15:07] 2025-10-12 00:11:15,304 | INFO     | ***************************************
[2025-10-12 02:15:07] 2025-10-12 00:11:15,304 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-12 02:15:07] 2025-10-12 00:11:15,304 | INFO     | ***************************************
[2025-10-12 02:15:07] 2025-10-12 00:11:15,304 | INFO     | 
[2025-10-12 02:15:07] 2025-10-12 00:11:15,308 | INFO     | architecture information:
[2025-10-12 02:15:07] 2025-10-12 00:11:15,308 | INFO     | executing command: cat /etc/os-release
[2025-10-12 02:15:07] 2025-10-12 00:11:15,324 | INFO     | cat /etc/os-release:
[2025-10-12 02:15:07] NAME="CentOS Linux"
[2025-10-12 02:15:07] VERSION="7 (Core)"
[2025-10-12 02:15:07] ID="centos"
[2025-10-12 02:15:07] ID_LIKE="rhel fedora"
[2025-10-12 02:15:07] VERSION_ID="7"
[2025-10-12 02:15:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-12 02:15:07] ANSI_COLOR="0;31"
[2025-10-12 02:15:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-12 02:15:07] HOME_URL="https://www.centos.org/"
[2025-10-12 02:15:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-12 02:15:07] 
[2025-10-12 02:15:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-12 02:15:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-12 02:15:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-12 02:15:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-12 02:15:07] 
[2025-10-12 02:15:07] 2025-10-12 00:11:15,324 | INFO     | ***************************************
[2025-10-12 02:15:07] 2025-10-12 00:11:15,827 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-10-12 02:15:07] 2025-10-12 00:11:15,844 | INFO     | sufficient remaining disk space (696729468928 B)
[2025-10-12 02:15:07] 2025-10-12 00:11:15,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-12 02:15:07] 2025-10-12 00:11:15,845 | INFO     | current server update state: UPDATING_FINAL
[2025-10-12 02:15:07] 2025-10-12 00:11:15,845 | INFO     | update_server=False
[2025-10-12 02:15:07] 2025-10-12 00:11:15,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-12 02:15:07] 2025-10-12 00:11:15,845 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-12 02:15:07] 2025-10-12 00:11:15,896 | INFO     | all job control threads have been joined
[2025-10-12 02:15:07] 2025-10-12 00:11:15,914 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-12 02:15:07] 2025-10-12 00:11:15,915 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-12 02:15:07] 2025-10-12 00:11:15,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:15:07] 2025-10-12 00:11:15,915 | INFO     | will abort loop
[2025-10-12 02:15:07] 2025-10-12 00:11:15,972 | INFO     | all payload control threads have been joined
[2025-10-12 02:15:07] 2025-10-12 00:11:16,395 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-12 02:15:07] 2025-10-12 00:11:16,816 | INFO     | all data control threads have been joined
[2025-10-12 02:15:07] 2025-10-12 00:11:16,850 | INFO     | [job] retrieve thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:16,902 | INFO     | [job] control thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:16,920 | INFO     | [job] job monitor thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:16,978 | INFO     | [payload] control thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,264 | INFO     | [payload] failed_post thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,398 | INFO     | [data] copytool_in thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,450 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,667 | INFO     | [job] validate thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,820 | INFO     | [data] control thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:17,828 | INFO     | [payload] execute_payloads thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:18,092 | INFO     | [job] create_data_payload thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:18,093 | INFO     | [payload] validate_post thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:18,094 | INFO     | [payload] validate_pre thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:18,401 | INFO     | [data] copytool_out thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:18,657 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-12 02:15:07] 2025-10-12 00:11:19,663 | INFO     | [job] queue monitor thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:19,848 | INFO     | [data] queue_monitor thread has finished
[2025-10-12 02:15:07] 2025-10-12 00:11:21,538 | INFO     | [monitor] cgroup control has ended
[2025-10-12 02:15:07] 2025-10-12 00:11:23,532 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23240546195264)>', '<ExcThread(monitor, started 23240311273216)>']
[2025-10-12 02:15:07] 2025-10-12 00:11:28,557 | INFO     | all workflow threads have been joined
[2025-10-12 02:15:07] 2025-10-12 00:11:28,557 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-12 02:15:07] 2025-10-12 00:11:28,558 | INFO     | traces error code: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:28,558 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-12 02:15:07] 2025-10-12 00:11:45,592 | INFO     | PID=3313816 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-12 02:15:07] 2025-10-12 00:11:45,593 | INFO     | .. there are 7 such processes running
[2025-10-12 02:15:07] 2025-10-12 00:11:45,594 | INFO     | found 0 job(s) in 20 queues
[2025-10-12 02:15:07] 2025-10-12 00:11:45,594 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-12 02:15:07] 2025-10-12 00:11:45,594 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-12 02:15:07] 2025-10-12 00:11:45,594 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-12 02:15:07] 2025-10-12 00:11:45,594 | CRITICAL | thread 'MainThread' is not alive
[2025-10-12 02:15:07] 2025-10-12 00:11:45,595 | INFO     | [monitor] control thread has ended
[2025-10-12 02:15:07] 2025-10-12 00:11:45,753 [wrapper] ==== pilot stdout END ====
[2025-10-12 02:15:07] 2025-10-12 00:11:45,756 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-12 02:15:07] 2025-10-12 00:11:45,759 [wrapper] pilotpid: 3313816
[2025-10-12 02:15:07] 2025-10-12 00:11:45,761 [wrapper] Pilot exit status: 0
[2025-10-12 02:15:07] 2025-10-12 00:11:45,771 [wrapper] pandaids: 6839573144 6839573144
[2025-10-12 02:15:07] 2025-10-12 00:11:45,843 [wrapper] cleanup supervisor_pilot 3595525 3313817
[2025-10-12 02:15:07] 2025-10-12 00:11:45,846 [wrapper] Test setup, not cleaning
[2025-10-12 02:15:07] 2025-10-12 00:11:45,849 [wrapper] apfmon messages muted
[2025-10-12 02:15:07] 2025-10-12 00:11:45,851 [wrapper] ==== wrapper stdout END ====
[2025-10-12 02:15:07] 2025-10-12 00:11:45,854 [wrapper] ==== wrapper stderr END ====
[2025-10-12 02:15:07]  *** Error codes and diagnostics ***
[2025-10-12 02:15:07]     "exeErrorCode": 0,
[2025-10-12 02:15:07]     "exeErrorDiag": "",
[2025-10-12 02:15:07]     "pilotErrorCode": 0,
[2025-10-12 02:15:07]     "pilotErrorDiag": "",
[2025-10-12 02:15:07]  *** Listing of results directory ***
[2025-10-12 02:15:07] total 606828
[2025-10-12 02:15:07] drwx------ 5 boinc boinc      4096 Oct  7 09:00 pilot3
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc      5112 Oct 10 23:48 queuedata.json
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc    557409 Oct 10 23:48 pilot3.tar.gz
[2025-10-12 02:15:07] -rwx------ 1 boinc boinc     36292 Oct 10 23:56 runpilot2-wrapper.sh
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc       100 Oct 11 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-12 02:15:07] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 20:51 run_atlas
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc       105 Oct 11 20:51 job.xml
[2025-10-12 02:15:07] -rw-r--r-- 3 boinc boinc 213334804 Oct 11 20:51 EVNT.46376901._002226.pool.root.1
[2025-10-12 02:15:07] -rw-r--r-- 3 boinc boinc 213334804 Oct 11 20:51 ATLAS.root_0
[2025-10-12 02:15:07] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:51 start_atlas.sh
[2025-10-12 02:15:07] drwxrwx--x 2 boinc boinc      4096 Oct 11 20:51 shared
[2025-10-12 02:15:07] -rw-r--r-- 2 boinc boinc    569677 Oct 11 20:51 input.tar.gz
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc         0 Oct 11 20:51 boinc_lockfile
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc      6639 Oct 11 23:23 init_data.xml
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc      2518 Oct 11 23:23 pandaJob.out
[2025-10-12 02:15:07] -rw------- 1 boinc boinc    975528 Oct 11 23:24 agis_schedconf.cvmfs.json
[2025-10-12 02:15:07] -rw------- 1 boinc boinc 187290545 Oct 12 02:10 HITS.46376905._136253.pool.root.1
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc       528 Oct 12 02:10 boinc_task_state.xml
[2025-10-12 02:15:07] -rw------- 1 boinc boinc        97 Oct 12 02:10 pilot_heartbeat.json
[2025-10-12 02:15:07] -rw------- 1 boinc boinc      1032 Oct 12 02:10 memory_monitor_summary.json
[2025-10-12 02:15:07] -rw------- 1 boinc boinc   1560580 Oct 12 02:11 agis_ddmendpoints.agis.ALL.json
[2025-10-12 02:15:07] -rw------- 1 boinc boinc    329779 Oct 12 02:11 log.46376905._136253.job.log.tgz.1
[2025-10-12 02:15:07] -rw------- 1 boinc boinc      7827 Oct 12 02:11 heartbeat.json
[2025-10-12 02:15:07] -rw------- 1 boinc boinc       892 Oct 12 02:11 pilotlog.txt
[2025-10-12 02:15:07] -rw------- 1 boinc boinc   1430664 Oct 12 02:11 log.46376905._136253.job.log.1
[2025-10-12 02:15:07] -rw------- 1 boinc boinc       357 Oct 12 02:11 output.list
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc       620 Oct 12 02:11 runtime_log
[2025-10-12 02:15:07] -rw------- 1 boinc boinc   1781760 Oct 12 02:11 result.tar.gz
[2025-10-12 02:15:07] -rw------- 1 boinc boinc       789 Oct 12 02:11 talLDmjHaR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmXYeNDmllyUUm.diag
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc      9147 Oct 12 02:11 runtime_log.err
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc        26 Oct 12 02:14 wrapper_checkpoint.txt
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc      8192 Oct 12 02:15 boinc_mmap_file
[2025-10-12 02:15:07] -rw-r--r-- 1 boinc boinc     22801 Oct 12 02:15 stderr.txt
[2025-10-12 02:15:07] HITS file was successfully produced:
[2025-10-12 02:15:07] -rw------- 1 boinc boinc 187290545 Oct 12 02:10 shared/HITS.pool.root.1
[2025-10-12 02:15:07]  *** Contents of shared directory: ***
[2025-10-12 02:15:07] total 393564
[2025-10-12 02:15:07] -rw-r--r-- 3 boinc boinc 213334804 Oct 11 20:51 ATLAS.root_0
[2025-10-12 02:15:07] -rw-r--r-- 2 boinc boinc     15120 Oct 11 20:51 start_atlas.sh
[2025-10-12 02:15:07] -rw-r--r-- 2 boinc boinc    569677 Oct 11 20:51 input.tar.gz
[2025-10-12 02:15:07] -rw------- 1 boinc boinc 187290545 Oct 12 02:10 HITS.pool.root.1
[2025-10-12 02:15:07] -rw------- 1 boinc boinc   1781760 Oct 12 02:11 result.tar.gz
02:15:09 (3309664): run_atlas exited; CPU time 38817.200202
02:15:09 (3309664): called boinc_finish(0)

</stderr_txt>
]]>

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