Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
00:45:22 (1541839): wrapper (7.7.26015): starting
00:45:22 (1541839): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 00:45:22] Arguments: --nthreads 12
[2025-10-11 00:45:22] Threads: 12
[2025-10-11 00:45:22] Checking for CVMFS
[2025-10-11 00:45:24] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:45:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:45:26] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:45:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:45:26] 2.13.2.0 1542070 0 29660 151573 3 1 4376627 6144000 0 130560 0 0 100.000 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-11 00:45:26] CVMFS is ok
[2025-10-11 00:45:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:45:26] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-11 00:45:26] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-11 00:45:26] Further information can be found at the LHC@home message board.
[2025-10-11 00:45:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:45:26] Checking for apptainer binary...
[2025-10-11 00:45:26] apptainer is not installed, using version from CVMFS
[2025-10-11 00:45:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:45:26] ace
[2025-10-11 00:45:26] apptainer works
[2025-10-11 00:45:26] Set ATHENA_PROC_NUMBER=12
[2025-10-11 00:45:26] Set ATHENA_CORE_NUMBER=12
[2025-10-11 00:45:26] Starting ATLAS job with PandaID=6837667853
[2025-10-11 00:45:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/16 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 01:57:53]  *** The last 200 lines of the pilot log: ***
[2025-10-11 01:57:53] 2025-10-11 06:57:09,348 | INFO     | using path: /var/lib/boinc-client/slots/16/PanDA_Pilot-6837667853/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,348 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-11 01:57:53] 2025-10-11 06:57:09,348 | WARNING  | maxPSS not found in memory monitor output
[2025-10-11 01:57:53] 2025-10-11 06:57:09,349 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4319777 B
[2025-10-11 01:57:53] 2025-10-11 06:57:09,349 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15805 B
[2025-10-11 01:57:53] 2025-10-11 06:57:09,349 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/16
[2025-10-11 01:57:53] 2025-10-11 06:57:09,363 | INFO     | sufficient remaining disk space (20296237056 B)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,363 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,364 | INFO     | size of work directory /var/lib/boinc-client/slots/16/PanDA_Pilot-6837667853: 4614377 B (within 2537553920 B limit)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,364 | INFO     | pfn file=/var/lib/boinc-client/slots/16/PanDA_Pilot-6837667853/HITS.46676269._041025.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,364 | INFO     | total size of present files: 0 B (workdir size: 4614377 B)
[2025-10-11 01:57:53] 2025-10-11 06:57:09,364 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/16/PanDA_Pilot-6837667853/HITS.46676269._041025.pool.root.1 since it does not exist
[2025-10-11 01:57:53] 2025-10-11 06:57:09,444 | INFO     | number of running child processes to parent process 1552849: 1
[2025-10-11 01:57:53] 2025-10-11 06:57:09,444 | INFO     | maximum number of monitored processes: 6
[2025-10-11 01:57:53] 2025-10-11 06:57:09,454 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 01:57:53] 2025-10-11 06:57:10,204 | INFO     | time since job start (4289s) is within the limit (172800.0s)
[2025-10-11 01:57:53] 2025-10-11 06:57:11,946 | INFO     | monitor loop #322: job 0:6837667853 is in state 'finished'
[2025-10-11 01:57:53] 2025-10-11 06:57:11,946 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,002 | INFO     | job 6837667853 has state=finished
[2025-10-11 01:57:53] 2025-10-11 06:57:12,002 | INFO     | preparing for final server update for job 6837667853 in state='finished'
[2025-10-11 01:57:53] 2025-10-11 06:57:12,210 | INFO     | time since job start (4291s) is within the limit (172800.0s)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,378 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,378 | INFO     | this job has now completed (state=finished)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,378 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,378 | INFO     | log transfer has been attempted: DONE
[2025-10-11 01:57:53] 2025-10-11 06:57:12,378 | INFO     | job 6837667853 has finished - writing final server update
[2025-10-11 01:57:53] 2025-10-11 06:57:12,379 | INFO     | total number of processed events: 400 (read)
[2025-10-11 01:57:53] 2025-10-11 06:57:12,379 | INFO     | executing command: lscpu
[2025-10-11 01:57:53] 2025-10-11 06:57:12,395 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 01:57:53] 2025-10-11 06:57:14,214 | INFO     | time since job start (4293s) is within the limit (172800.0s)
[2025-10-11 01:57:53] 2025-10-11 06:57:14,449 | INFO     | monitor loop #323: job 0:6837667853 is in state 'finished'
[2025-10-11 01:57:53] 2025-10-11 06:57:14,450 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 01:57:53] 2025-10-11 06:57:16,218 | INFO     | time since job start (4295s) is within the limit (172800.0s)
[2025-10-11 01:57:53] 2025-10-11 06:57:16,953 | INFO     | monitor loop #324: job 0:6837667853 is in state 'finished'
[2025-10-11 01:57:53] 2025-10-11 06:57:16,953 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 01:57:53] 2025-10-11 06:57:18,224 | INFO     | time since job start (4297s) is within the limit (172800.0s)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,048 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 01:57:53] 2025-10-11 06:57:19,051 | INFO     | found 8 cores (8 cores per socket, 1 socket) HT, CPU MHz: 2696.9758125
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | INFO     | using path: /var/lib/boinc-client/slots/16/PanDA_Pilot-6837667853/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | INFO     | extracted standard info from prmon json
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 01:57:53] 2025-10-11 06:57:19,053 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 01:57:53] 2025-10-11 06:57:19,054 | INFO     | fitting pss+swap vs Time
[2025-10-11 01:57:53] 2025-10-11 06:57:19,054 | INFO     | sum of square deviations: 77515872.0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | sum of deviations: -8058512238.0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | mean x: 1760163757.0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | mean y: 2823831.015873016
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | -- intersect: 182988589335.51227
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | intersect: 182988589335.51227
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | chi2: 0.11595941375976022
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | -- intersect: 182988589335.51227
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | current memory leak: -103.96 B/s (using 63 data points, chi2=0.12)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | could have reported an average CPU frequency of 2487 MHz (6 samples)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | ..............................
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . Timing measurements:
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . get job = 0 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . initial setup = 3 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . payload setup = 3 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . stage-in = 0 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . payload execution = 4265 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,055 | INFO     | . stage-out = 0 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,056 | INFO     | . log creation = 0 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,056 | INFO     | ..............................
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | 
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | job summary report
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | --------------------------------------------------
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | PanDA job id: 6837667853
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | task id: 46676269
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | errors: (none)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | pilot state: finished 
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | transexitcode: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | exeerrorcode: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | exeerrordiag: 
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | exitcode: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | exitmsg: OK
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | cpuconsumptiontime: 48155 s
[2025-10-11 01:57:53] 2025-10-11 06:57:19,102 | INFO     | nevents: 400
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | neventsw: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | pid: 1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | pgrp: 1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | corecount: 12
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | event service: False
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | sizes: {0: 2348865, 3: 2349127, 11: 2349155, 4273: 2375219, 4275: 2384413, 4285: 2384551}
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | --------------------------------------------------
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | 
[2025-10-11 01:57:53] 2025-10-11 06:57:19,103 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/16
[2025-10-11 01:57:53] 2025-10-11 06:57:19,118 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,119 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,120 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 01:57:53] 2025-10-11 06:57:19,120 | INFO     | job 6837667853 has completed (purged errors)
[2025-10-11 01:57:53] 2025-10-11 06:57:19,120 | INFO     | overall cleanup function is called
[2025-10-11 01:57:53] 2025-10-11 06:57:20,127 | INFO     | --- collectZombieJob: --- 10, [1552849]
[2025-10-11 01:57:53] 2025-10-11 06:57:20,127 | INFO     | zombie collector waiting for pid 1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:20,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 01:57:53] 2025-10-11 06:57:20,127 | INFO     | collected zombie processes
[2025-10-11 01:57:53] 2025-10-11 06:57:20,127 | INFO     | will attempt to kill all subprocesses of pid=1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:20,204 | INFO     | process IDs to be killed: [1552849] (in reverse order)
[2025-10-11 01:57:53] 2025-10-11 06:57:20,241 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 01:57:53] 2025-10-11 06:57:20,241 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 01:57:53] 2025-10-11 06:57:20,244 | INFO     | did not find any defunct processes belonging to 1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:20,246 | INFO     | did not find any defunct processes belonging to 1552849
[2025-10-11 01:57:53] 2025-10-11 06:57:20,246 | INFO     | ready for new job
[2025-10-11 01:57:53] 2025-10-11 06:57:20,246 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 01:57:53] 2025-10-11 06:57:20,247 | INFO     | ***************************************
[2025-10-11 01:57:53] 2025-10-11 06:57:20,247 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 01:57:53] 2025-10-11 06:57:20,247 | INFO     | ***************************************
[2025-10-11 01:57:53] 2025-10-11 06:57:20,248 | INFO     | 
[2025-10-11 01:57:53] 2025-10-11 06:57:20,248 | INFO     | architecture information:
[2025-10-11 01:57:53] 2025-10-11 06:57:20,248 | INFO     | executing command: cat /etc/os-release
[2025-10-11 01:57:53] 2025-10-11 06:57:20,261 | INFO     | cat /etc/os-release:
[2025-10-11 01:57:53] NAME="CentOS Linux"
[2025-10-11 01:57:53] VERSION="7 (Core)"
[2025-10-11 01:57:53] ID="centos"
[2025-10-11 01:57:53] ID_LIKE="rhel fedora"
[2025-10-11 01:57:53] VERSION_ID="7"
[2025-10-11 01:57:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 01:57:53] ANSI_COLOR="0;31"
[2025-10-11 01:57:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 01:57:53] HOME_URL="https://www.centos.org/"
[2025-10-11 01:57:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 01:57:53] 
[2025-10-11 01:57:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 01:57:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 01:57:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 01:57:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 01:57:53] 
[2025-10-11 01:57:53] 2025-10-11 06:57:20,261 | INFO     | ***************************************
[2025-10-11 01:57:53] 2025-10-11 06:57:20,764 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/16
[2025-10-11 01:57:53] 2025-10-11 06:57:20,775 | INFO     | sufficient remaining disk space (20301479936 B)
[2025-10-11 01:57:53] 2025-10-11 06:57:20,775 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | INFO     | update_server=False
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 01:57:53] 2025-10-11 06:57:20,776 | INFO     | aborting loop
[2025-10-11 01:57:53] 2025-10-11 06:57:20,854 | INFO     | all job control threads have been joined
[2025-10-11 01:57:53] 2025-10-11 06:57:21,182 | INFO     | all payload control threads have been joined
[2025-10-11 01:57:53] 2025-10-11 06:57:21,702 | INFO     | all data control threads have been joined
[2025-10-11 01:57:53] 2025-10-11 06:57:21,778 | INFO     | [job] queue monitor thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:21,778 | INFO     | [job] retrieve thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:21,782 | INFO     | [job] job monitor thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:21,859 | INFO     | [job] control thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:21,979 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 01:57:53] 2025-10-11 06:57:22,186 | INFO     | [payload] control thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,342 | INFO     | [payload] validate_post thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,654 | INFO     | [data] copytool_in thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,699 | INFO     | [job] validate thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,706 | INFO     | [data] control thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,759 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,914 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:22,990 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:23,354 | INFO     | [payload] failed_post thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:23,984 | INFO     | [data] copytool_out thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:24,782 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:30,873 | INFO     | job.realtimelogging is not enabled
[2025-10-11 01:57:53] 2025-10-11 06:57:31,874 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 01:57:53] 2025-10-11 06:57:47,622 | INFO     | [monitor] cgroup control has ended
[2025-10-11 01:57:53] 2025-10-11 06:57:48,474 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140414069344064)>', '<ExcThread(monitor, started 140413503510272)>']
[2025-10-11 01:57:53] 2025-10-11 06:57:51,404 | INFO     | PID=1546263 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 01:57:53] 2025-10-11 06:57:51,404 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 01:57:53] 2025-10-11 06:57:51,404 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 01:57:53] 2025-10-11 06:57:51,404 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 01:57:53] 2025-10-11 06:57:51,405 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 01:57:53] 2025-10-11 06:57:51,405 | INFO     | [monitor] control thread has ended
[2025-10-11 01:57:53] 2025-10-11 06:57:53,498 | INFO     | all workflow threads have been joined
[2025-10-11 01:57:53] 2025-10-11 06:57:53,498 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 01:57:53] 2025-10-11 06:57:53,498 | INFO     | traces error code: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:53,499 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 01:57:53] 2025-10-11 06:57:53,609 [wrapper] ==== pilot stdout END ====
[2025-10-11 01:57:53] 2025-10-11 06:57:53,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 01:57:53] 2025-10-11 06:57:53,613 [wrapper] pilotpid: 1546263
[2025-10-11 01:57:53] 2025-10-11 06:57:53,616 [wrapper] Pilot exit status: 0
[2025-10-11 01:57:53] 2025-10-11 06:57:53,623 [wrapper] pandaids: 6837667853
[2025-10-11 01:57:53] 2025-10-11 06:57:53,646 [wrapper] cleanup supervisor_pilot 1572859 1546264
[2025-10-11 01:57:53] 2025-10-11 06:57:53,648 [wrapper] Test setup, not cleaning
[2025-10-11 01:57:53] 2025-10-11 06:57:53,650 [wrapper] apfmon messages muted
[2025-10-11 01:57:53] 2025-10-11 06:57:53,652 [wrapper] ==== wrapper stdout END ====
[2025-10-11 01:57:53] 2025-10-11 06:57:53,654 [wrapper] ==== wrapper stderr END ====
[2025-10-11 01:57:53]  *** Error codes and diagnostics ***
[2025-10-11 01:57:53]     "exeErrorCode": 0,
[2025-10-11 01:57:53]     "exeErrorDiag": "",
[2025-10-11 01:57:53]     "pilotErrorCode": 0,
[2025-10-11 01:57:53]     "pilotErrorDiag": "",
[2025-10-11 01:57:53]  *** Listing of results directory ***
[2025-10-11 01:57:53] total 411424
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc    557409 Oct 10 10:29 pilot3.tar.gz
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc      5112 Oct 10 10:42 queuedata.json
[2025-10-11 01:57:53] -rwx------ 1 boinc boinc     36292 Oct 10 10:42 runpilot2-wrapper.sh
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc       100 Oct 11 00:45 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 01:57:53] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 00:45 run_atlas
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc       105 Oct 11 00:45 job.xml
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc      6989 Oct 11 00:45 init_data.xml
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc 222155852 Oct 11 00:45 EVNT.46676267._001663.pool.root.1
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:45 start_atlas.sh
[2025-10-11 01:57:53] drwxrwx--x 2 boinc boinc      4096 Oct 11 00:45 shared
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc    569682 Oct 11 00:45 input.tar.gz
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc         0 Oct 11 00:45 boinc_lockfile
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc      2550 Oct 11 00:45 pandaJob.out
[2025-10-11 01:57:53] -rw------- 1 boinc boinc    975533 Oct 11 00:45 agis_schedconf.cvmfs.json
[2025-10-11 01:57:53] -rw------- 1 boinc boinc   1560580 Oct 11 00:45 agis_ddmendpoints.agis.ALL.json
[2025-10-11 01:57:53] drwx------ 5 boinc boinc      4096 Oct 11 00:45 pilot3
[2025-10-11 01:57:53] -rw------- 1 boinc boinc 193191500 Oct 11 01:56 HITS.46676269._041025.pool.root.1
[2025-10-11 01:57:53] -rw------- 1 boinc boinc      1019 Oct 11 01:57 memory_monitor_summary.json
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc       529 Oct 11 01:57 boinc_task_state.xml
[2025-10-11 01:57:53] -rw------- 1 boinc boinc    386361 Oct 11 01:57 log.46676269._041025.job.log.tgz.1
[2025-10-11 01:57:53] -rw------- 1 boinc boinc      7758 Oct 11 01:57 heartbeat.json
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc        27 Oct 11 01:57 wrapper_checkpoint.txt
[2025-10-11 01:57:53] -rw------- 1 boinc boinc        95 Oct 11 01:57 pilot_heartbeat.json
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc      8192 Oct 11 01:57 boinc_mmap_file
[2025-10-11 01:57:53] -rw------- 1 boinc boinc      4828 Oct 11 01:57 pilotlog.txt
[2025-10-11 01:57:53] -rw------- 1 boinc boinc    634805 Oct 11 01:57 log.46676269._041025.job.log.1
[2025-10-11 01:57:53] -rw------- 1 boinc boinc       357 Oct 11 01:57 output.list
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc       620 Oct 11 01:57 runtime_log
[2025-10-11 01:57:53] -rw------- 1 boinc boinc   1044480 Oct 11 01:57 result.tar.gz
[2025-10-11 01:57:53] -rw------- 1 boinc boinc       640 Oct 11 01:57 vHfLDmuRUR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNCQMDmkleJ3m.diag
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc      8754 Oct 11 01:57 runtime_log.err
[2025-10-11 01:57:53] -rw-r--r-- 1 boinc boinc     22496 Oct 11 01:57 stderr.txt
[2025-10-11 01:57:53] HITS file was successfully produced:
[2025-10-11 01:57:53] -rw------- 1 boinc boinc 193191500 Oct 11 01:56 shared/HITS.pool.root.1
[2025-10-11 01:57:53]  *** Contents of shared directory: ***
[2025-10-11 01:57:53] total 407220
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc 222155852 Oct 11 00:45 ATLAS.root_0
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc     15120 Oct 11 00:45 start_atlas.sh
[2025-10-11 01:57:53] -rw-r--r-- 2 boinc boinc    569682 Oct 11 00:45 input.tar.gz
[2025-10-11 01:57:53] -rw------- 1 boinc boinc 193191500 Oct 11 01:56 HITS.pool.root.1
[2025-10-11 01:57:53] -rw------- 1 boinc boinc   1044480 Oct 11 01:57 result.tar.gz
01:57:55 (1541839): run_atlas exited; CPU time 48181.085663
01:57:55 (1541839): called boinc_finish(0)

</stderr_txt>
]]>

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