Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:48:49 (5748): wrapper (7.7.26015): starting
19:48:49 (5748): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 19:48:49] Arguments: --nthreads 8
[2025-10-10 19:48:49] Threads: 8
[2025-10-10 19:48:49] Checking for CVMFS
[2025-10-10 19:48:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:48:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:48:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:48:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:48:50] 2.11.2.0 2765 247 57732 151565 1 57 10536737 20275200 1 130560 0 172851 99.988 7999 32516 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 19:48:50] CVMFS is ok
[2025-10-10 19:48:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:48:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 19:48:50] Further information can be found at the LHC@home message board.
[2025-10-10 19:48:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:48:50] Checking for apptainer binary...
[2025-10-10 19:48:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 19:48:50] Running /usr/bin/apptainer --version
[2025-10-10 19:48:50] apptainer version 1.3.2-1.el7
[2025-10-10 19:48:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:48:51] c-204-21.aglt2.org
[2025-10-10 19:48:51] apptainer works
[2025-10-10 19:48:52] Set ATHENA_PROC_NUMBER=8
[2025-10-10 19:48:52] Set ATHENA_CORE_NUMBER=8
[2025-10-10 19:48:52] Starting ATLAS job with PandaID=6837706506
[2025-10-10 19:48:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:48:42 (5768): wrapper (7.7.26015): starting
20:48:42 (5768): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 20:48:42] Arguments: --nthreads 8
[2025-10-10 20:48:42] Threads: 8
[2025-10-10 20:48:42] This job has been restarted, cleaning up previous attempt
[2025-10-10 20:48:42] Checking for CVMFS
[2025-10-10 20:48:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 20:48:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 20:48:42] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 20:48:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 20:48:42] 2.11.2.0 2765 307 66604 151566 1 39 10594615 20275201 1 130560 0 239224 99.990 9368 33102 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 20:48:42] CVMFS is ok
[2025-10-10 20:48:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 20:48:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 20:48:42] Further information can be found at the LHC@home message board.
[2025-10-10 20:48:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 20:48:42] Checking for apptainer binary...
[2025-10-10 20:48:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 20:48:42] Running /usr/bin/apptainer --version
[2025-10-10 20:48:42] apptainer version 1.3.2-1.el7
[2025-10-10 20:48:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 20:48:44] c-204-21.aglt2.org
[2025-10-10 20:48:44] apptainer works
[2025-10-10 20:48:44] Set ATHENA_PROC_NUMBER=8
[2025-10-10 20:48:44] Set ATHENA_CORE_NUMBER=8
[2025-10-10 20:48:44] Starting ATLAS job with PandaID=6837706506
[2025-10-10 20:48:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 22:48:18]  *** The last 200 lines of the pilot log: ***
[2025-10-10 22:48:18] 2025-10-11 02:47:42,627 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 22:48:18] 2025-10-11 02:47:42,627 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 22:48:18] 2025-10-11 02:47:42,630 | INFO     | fitting pss+swap vs Time
[2025-10-10 22:48:18] 2025-10-11 02:47:42,631 | INFO     | sum of square deviations: 496597218.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,631 | INFO     | sum of deviations: -6139862768.000001
[2025-10-10 22:48:18] 2025-10-11 02:47:42,631 | INFO     | mean x: 1760147310.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,631 | INFO     | mean y: 2517189.52991453
[2025-10-10 22:48:18] 2025-10-11 02:47:42,632 | INFO     | -- intersect: 21764747309.120224
[2025-10-10 22:48:18] 2025-10-11 02:47:42,632 | INFO     | intersect: 21764747309.120224
[2025-10-10 22:48:18] 2025-10-11 02:47:42,632 | INFO     | chi2: 2.2932444115011035
[2025-10-10 22:48:18] 2025-10-11 02:47:42,632 | INFO     | sum of square deviations: 435610028.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,633 | INFO     | sum of deviations: 1872473446.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,633 | INFO     | mean x: 1760147157.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,633 | INFO     | mean y: 2536554.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,633 | INFO     | -- intersect: -7563471116.634535
[2025-10-10 22:48:18] 2025-10-11 02:47:42,633 | INFO     | intersect: -7563471116.634535
[2025-10-10 22:48:18] 2025-10-11 02:47:42,634 | INFO     | chi2: 1.5343788715197801
[2025-10-10 22:48:18] 2025-10-11 02:47:42,634 | INFO     | current chi2=1.5343788715197801 (change=33.09135023617426 %)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,634 | INFO     | sum of square deviations: 379832238.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,635 | INFO     | sum of deviations: 1977459326.0000007
[2025-10-10 22:48:18] 2025-10-11 02:47:42,635 | INFO     | mean x: 1760147005.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,635 | INFO     | mean y: 2536841.7009345796
[2025-10-10 22:48:18] 2025-10-11 02:47:42,635 | INFO     | -- intersect: -9161032655.441694
[2025-10-10 22:48:18] 2025-10-11 02:47:42,635 | INFO     | intersect: -9161032655.441694
[2025-10-10 22:48:18] 2025-10-11 02:47:42,636 | INFO     | chi2: 1.5361863915038805
[2025-10-10 22:48:18] 2025-10-11 02:47:42,636 | INFO     | current chi2=1.5361863915038805 (change=-0.11780141252271117 %)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,636 | INFO     | right removable region: 106
[2025-10-10 22:48:18] 2025-10-11 02:47:42,636 | INFO     | sum of square deviations: 435610028.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,637 | INFO     | sum of deviations: -22910171898.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,637 | INFO     | mean x: 1760147462.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,637 | INFO     | mean y: 2558266.973214286
[2025-10-10 22:48:18] 2025-10-11 02:47:42,637 | INFO     | -- intersect: 92574533980.49739
[2025-10-10 22:48:18] 2025-10-11 02:47:42,637 | INFO     | intersect: 92574533980.49739
[2025-10-10 22:48:18] 2025-10-11 02:47:42,638 | INFO     | chi2: 0.9018233115274493
[2025-10-10 22:48:18] 2025-10-11 02:47:42,638 | INFO     | current chi2=0.9018233115274493 (change=60.67478429230589 %)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,638 | INFO     | sum of square deviations: 379832238.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,639 | INFO     | sum of deviations: -20032976877.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,639 | INFO     | mean x: 1760147615.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,639 | INFO     | mean y: 2550373.4859813084
[2025-10-10 22:48:18] 2025-10-11 02:47:42,639 | INFO     | -- intersect: 92835630201.22218
[2025-10-10 22:48:18] 2025-10-11 02:47:42,639 | INFO     | intersect: 92835630201.22218
[2025-10-10 22:48:18] 2025-10-11 02:47:42,640 | INFO     | chi2: 0.9016803904068351
[2025-10-10 22:48:18] 2025-10-11 02:47:42,640 | INFO     | current chi2=0.9016803904068351 (change=0.015848017986154397 %)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,640 | INFO     | left removable region: 20
[2025-10-10 22:48:18] 2025-10-11 02:47:42,640 | INFO     | sum of square deviations: 197203697.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | sum of deviations: -5298372404.0
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | mean x: 1760147584.5
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | mean y: 2551898.0465116277
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | -- intersect: 47293335523.85585
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | intersect: 47293335523.85585
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | chi2: 0.07454216105049534
[2025-10-10 22:48:18] 2025-10-11 02:47:42,641 | INFO     | -- intersect: 47293335523.85585
[2025-10-10 22:48:18] 2025-10-11 02:47:42,642 | INFO     | current memory leak: -26.87 B/s (using 86 data points, chi2=0.07)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,642 | INFO     | could have reported an average CPU frequency of 1950 MHz (7 samples)
[2025-10-10 22:48:18] 2025-10-11 02:47:42,642 | INFO     | ..............................
[2025-10-10 22:48:18] 2025-10-11 02:47:42,642 | INFO     | . Timing measurements:
[2025-10-10 22:48:18] 2025-10-11 02:47:42,642 | INFO     | . get job = 0 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . initial setup = 1 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . payload setup = 8 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . stage-in = 0 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . payload execution = 7081 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . stage-out = 0 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | . log creation = 0 s
[2025-10-10 22:48:18] 2025-10-11 02:47:42,643 | INFO     | ..............................
[2025-10-10 22:48:18] 2025-10-11 02:47:43,098 | INFO     | 
[2025-10-10 22:48:18] 2025-10-11 02:47:43,098 | INFO     | job summary report
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | --------------------------------------------------
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | PanDA job id: 6837706506
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | task id: 46676269
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | errors: (none)
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 22:48:18] 2025-10-11 02:47:43,099 | INFO     | pilot state: finished 
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | transexitcode: 0
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | exeerrorcode: 0
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | exeerrordiag: 
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | exitcode: 0
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | exitmsg: OK
[2025-10-10 22:48:18] 2025-10-11 02:47:43,100 | INFO     | cpuconsumptiontime: 53241 s
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | nevents: 400
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | neventsw: 0
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | pid: 17082
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | pgrp: 17082
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | corecount: 8
[2025-10-10 22:48:18] 2025-10-11 02:47:43,101 | INFO     | event service: False
[2025-10-10 22:48:18] 2025-10-11 02:47:43,102 | INFO     | sizes: {0: 2348628, 1: 2348883, 7: 2349145, 12: 2349173, 7093: 2376398, 7095: 2385396, 7098: 2385608, 7104: 2385802}
[2025-10-10 22:48:18] 2025-10-11 02:47:43,102 | INFO     | --------------------------------------------------
[2025-10-10 22:48:18] 2025-10-11 02:47:43,102 | INFO     | 
[2025-10-10 22:48:18] 2025-10-11 02:47:43,102 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 22:48:18] 2025-10-11 02:47:43,129 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,130 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,131 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 22:48:18] 2025-10-11 02:47:43,132 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,133 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 22:48:18] 2025-10-11 02:47:43,133 | INFO     | job 6837706506 has completed (purged errors)
[2025-10-10 22:48:18] 2025-10-11 02:47:43,133 | INFO     | overall cleanup function is called
[2025-10-10 22:48:18] 2025-10-11 02:47:44,139 | INFO     | --- collectZombieJob: --- 10, [17082]
[2025-10-10 22:48:18] 2025-10-11 02:47:44,139 | INFO     | zombie collector waiting for pid 17082
[2025-10-10 22:48:18] 2025-10-11 02:47:44,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 22:48:18] 2025-10-11 02:47:44,140 | INFO     | collected zombie processes
[2025-10-10 22:48:18] 2025-10-11 02:47:44,140 | INFO     | will attempt to kill all subprocesses of pid=17082
[2025-10-10 22:48:18] 2025-10-11 02:47:44,229 | INFO     | process IDs to be killed: [17082] (in reverse order)
[2025-10-10 22:48:18] 2025-10-11 02:47:44,285 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 22:48:18] 2025-10-11 02:47:44,285 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 22:48:18] 2025-10-11 02:47:44,289 | INFO     | did not find any defunct processes belonging to 17082
[2025-10-10 22:48:18] 2025-10-11 02:47:44,293 | INFO     | did not find any defunct processes belonging to 17082
[2025-10-10 22:48:18] 2025-10-11 02:47:44,293 | INFO     | ready for new job
[2025-10-10 22:48:18] 2025-10-11 02:47:44,294 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 22:48:18] 2025-10-11 02:47:44,296 | INFO     | ***************************************
[2025-10-10 22:48:18] 2025-10-11 02:47:44,296 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 22:48:18] 2025-10-11 02:47:44,296 | INFO     | ***************************************
[2025-10-10 22:48:18] 2025-10-11 02:47:44,296 | INFO     | 
[2025-10-10 22:48:18] 2025-10-11 02:47:44,297 | INFO     | architecture information:
[2025-10-10 22:48:18] 2025-10-11 02:47:44,297 | INFO     | executing command: cat /etc/os-release
[2025-10-10 22:48:18] 2025-10-11 02:47:44,315 | INFO     | cat /etc/os-release:
[2025-10-10 22:48:18] NAME="CentOS Linux"
[2025-10-10 22:48:18] VERSION="7 (Core)"
[2025-10-10 22:48:18] ID="centos"
[2025-10-10 22:48:18] ID_LIKE="rhel fedora"
[2025-10-10 22:48:18] VERSION_ID="7"
[2025-10-10 22:48:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 22:48:18] ANSI_COLOR="0;31"
[2025-10-10 22:48:18] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 22:48:18] HOME_URL="https://www.centos.org/"
[2025-10-10 22:48:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 22:48:18] 
[2025-10-10 22:48:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 22:48:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 22:48:18] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 22:48:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 22:48:18] 
[2025-10-10 22:48:18] 2025-10-11 02:47:44,315 | INFO     | ***************************************
[2025-10-10 22:48:18] 2025-10-11 02:47:44,816 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 22:48:18] 2025-10-11 02:47:44,835 | INFO     | sufficient remaining disk space (18552455168 B)
[2025-10-10 22:48:18] 2025-10-11 02:47:44,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 22:48:18] 2025-10-11 02:47:44,836 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 22:48:18] 2025-10-11 02:47:44,836 | INFO     | update_server=False
[2025-10-10 22:48:18] 2025-10-11 02:47:44,837 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 22:48:18] 2025-10-11 02:47:44,837 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 22:48:18] 2025-10-11 02:47:44,849 | INFO     | all data control threads have been joined
[2025-10-10 22:48:18] 2025-10-11 02:47:45,058 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 22:48:18] 2025-10-11 02:47:45,058 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 22:48:18] 2025-10-11 02:47:45,059 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:48:18] 2025-10-11 02:47:45,059 | INFO     | will abort loop
[2025-10-10 22:48:18] 2025-10-11 02:47:45,842 | INFO     | [job] retrieve thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:45,855 | INFO     | [data] control thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,007 | INFO     | [job] validate thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,028 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,064 | INFO     | [job] job monitor thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,072 | INFO     | [data] copytool_in thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,148 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,149 | INFO     | all payload control threads have been joined
[2025-10-10 22:48:18] 2025-10-11 02:47:46,193 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,201 | INFO     | [payload] failed_post thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:46,357 | INFO     | all job control threads have been joined
[2025-10-10 22:48:18] 2025-10-11 02:47:46,842 | INFO     | [data] copytool_out thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:47,056 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:47,078 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 22:48:18] 2025-10-11 02:47:47,153 | INFO     | [payload] control thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:47,194 | INFO     | [payload] validate_post thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:47,362 | INFO     | [job] control thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:47,751 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:48:18] 2025-10-11 02:47:48,751 | INFO     | [job] queue monitor thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:47:51,081 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 22:48:18] 2025-10-11 02:48:12,246 | INFO     | [monitor] cgroup control has ended
[2025-10-10 22:48:18] 2025-10-11 02:48:13,251 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139980568643392)>', '<ExcThread(monitor, started 139979669882624)>']
[2025-10-10 22:48:18] 2025-10-11 02:48:14,570 | INFO     | PID=9562 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-10 22:48:18] 2025-10-11 02:48:14,571 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 22:48:18] 2025-10-11 02:48:14,571 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 22:48:18] 2025-10-11 02:48:14,571 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 22:48:18] 2025-10-11 02:48:14,571 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 22:48:18] 2025-10-11 02:48:14,571 | INFO     | [monitor] control thread has ended
[2025-10-10 22:48:18] 2025-10-11 02:48:18,257 | INFO     | all workflow threads have been joined
[2025-10-10 22:48:18] 2025-10-11 02:48:18,258 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 22:48:18] 2025-10-11 02:48:18,258 | INFO     | traces error code: 0
[2025-10-10 22:48:18] 2025-10-11 02:48:18,258 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 22:48:18] 2025-10-11 02:48:18,356 [wrapper] ==== pilot stdout END ====
[2025-10-10 22:48:18] 2025-10-11 02:48:18,360 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 22:48:18] 2025-10-11 02:48:18,364 [wrapper] pilotpid: 9562
[2025-10-10 22:48:18] 2025-10-11 02:48:18,369 [wrapper] Pilot exit status: 0
[2025-10-10 22:48:18] 2025-10-11 02:48:18,388 [wrapper] pandaids: 6837706506 6837706506
[2025-10-10 22:48:18] 2025-10-11 02:48:18,435 [wrapper] cleanup supervisor_pilot 28148 9563
[2025-10-10 22:48:18] 2025-10-11 02:48:18,440 [wrapper] Test setup, not cleaning
[2025-10-10 22:48:18] 2025-10-11 02:48:18,445 [wrapper] apfmon messages muted
[2025-10-10 22:48:18] 2025-10-11 02:48:18,449 [wrapper] ==== wrapper stdout END ====
[2025-10-10 22:48:18] 2025-10-11 02:48:18,454 [wrapper] ==== wrapper stderr END ====
[2025-10-10 22:48:18]  *** Error codes and diagnostics ***
[2025-10-10 22:48:18]     "exeErrorCode": 0,
[2025-10-10 22:48:18]     "exeErrorDiag": "",
[2025-10-10 22:48:18]     "pilotErrorCode": 0,
[2025-10-10 22:48:18]     "pilotErrorDiag": "",
[2025-10-10 22:48:18]  *** Listing of results directory ***
[2025-10-10 22:48:18] total 627132
[2025-10-10 22:48:18] drwx------ 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 14:07 pilot3.tar.gz
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 14:13 queuedata.json
[2025-10-10 22:48:18] -rwx------ 1 boincer umatlas     36292 Oct 10 14:13 runpilot2-wrapper.sh
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas       100 Oct 10 19:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 22:48:18] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 19:48 run_atlas
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas       105 Oct 10 19:48 job.xml
[2025-10-10 22:48:18] -rw-r--r-- 3 boincer umatlas 221021200 Oct 10 19:48 EVNT.46676267._001739.pool.root.1
[2025-10-10 22:48:18] -rw-r--r-- 3 boincer umatlas 221021200 Oct 10 19:48 ATLAS.root_0
[2025-10-10 22:48:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 19:48 start_atlas.sh
[2025-10-10 22:48:18] drwxrwx--x 2 boincer umatlas      4096 Oct 10 19:48 shared
[2025-10-10 22:48:18] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 19:48 input.tar.gz
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas         0 Oct 10 19:48 boinc_lockfile
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas   1560580 Oct 10 19:49 agis_ddmendpoints.agis.ALL.json
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas      2549 Oct 10 20:48 pandaJob.out
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas    975525 Oct 10 20:48 agis_schedconf.cvmfs.json
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas 193533813 Oct 10 22:46 HITS.46676269._042937.pool.root.1
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas       531 Oct 10 22:47 boinc_task_state.xml
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas      5910 Oct 10 22:47 init_data.xml
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas      1062 Oct 10 22:47 memory_monitor_summary.json
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas    346681 Oct 10 22:47 log.46676269._042937.job.log.tgz.1
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas      7851 Oct 10 22:47 heartbeat.json
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 22:47 boinc_mmap_file
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas        28 Oct 10 22:47 wrapper_checkpoint.txt
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas        96 Oct 10 22:48 pilot_heartbeat.json
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas      4931 Oct 10 22:48 pilotlog.txt
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas   1003332 Oct 10 22:48 log.46676269._042937.job.log.1
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas       357 Oct 10 22:48 output.list
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas       620 Oct 10 22:48 runtime_log
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas   1372160 Oct 10 22:48 result.tar.gz
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas      8788 Oct 10 22:48 runtime_log.err
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas       784 Oct 10 22:48 8zfMDmtnWR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmrMQMDmhJnn4m.diag
[2025-10-10 22:48:18] -rw-r--r-- 1 boincer umatlas     23006 Oct 10 22:48 stderr.txt
[2025-10-10 22:48:18] HITS file was successfully produced:
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas 193533813 Oct 10 22:46 shared/HITS.pool.root.1
[2025-10-10 22:48:18]  *** Contents of shared directory: ***
[2025-10-10 22:48:18] total 406764
[2025-10-10 22:48:18] -rw-r--r-- 3 boincer umatlas 221021200 Oct 10 19:48 ATLAS.root_0
[2025-10-10 22:48:18] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 19:48 start_atlas.sh
[2025-10-10 22:48:18] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 19:48 input.tar.gz
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas 193533813 Oct 10 22:46 HITS.pool.root.1
[2025-10-10 22:48:18] -rw------- 1 boincer umatlas   1372160 Oct 10 22:48 result.tar.gz
22:48:20 (5768): run_atlas exited; CPU time 53257.595156
22:48:20 (5768): called boinc_finish(0)

</stderr_txt>
]]>

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