Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
19:12:12 (12567): wrapper (7.7.26015): starting
19:12:12 (12567): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 19:12:12] Arguments: --nthreads 8
[2025-10-10 19:12:12] Threads: 8
[2025-10-10 19:12:12] Checking for CVMFS
[2025-10-10 19:12:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:12:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:12:12] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:12:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:12:12] 2.11.2.0 3869 36357 127116 151564 0 59 18104537 18432000 1833 130560 0 34567005 99.994 1182100 37994 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 19:12:12] CVMFS is ok
[2025-10-10 19:12:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:12:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 19:12:12] Further information can be found at the LHC@home message board.
[2025-10-10 19:12:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:12:12] Checking for apptainer binary...
[2025-10-10 19:12:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 19:12:12] Running /usr/bin/apptainer --version
[2025-10-10 19:12:12] apptainer version 1.3.2-1.el7
[2025-10-10 19:12:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:12:13] c-206-12.aglt2.org
[2025-10-10 19:12:13] apptainer works
[2025-10-10 19:12:13] Set ATHENA_PROC_NUMBER=8
[2025-10-10 19:12:13] Set ATHENA_CORE_NUMBER=8
[2025-10-10 19:12:13] Starting ATLAS job with PandaID=6837663047
[2025-10-10 19:12:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 22:06:46]  *** The last 200 lines of the pilot log: ***
[2025-10-10 22:06:46] 2025-10-11 02:05:49,143 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 22:06:46] 2025-10-11 02:05:49,143 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 22:06:46] 2025-10-11 02:05:49,148 | INFO     | fitting pss+swap vs Time
[2025-10-10 22:06:46] 2025-10-11 02:05:49,149 | INFO     | sum of square deviations: 1523386702.5
[2025-10-10 22:06:46] 2025-10-11 02:05:49,150 | INFO     | sum of deviations: -5538900833.000002
[2025-10-10 22:06:46] 2025-10-11 02:05:49,150 | INFO     | mean x: 1760143123.5
[2025-10-10 22:06:46] 2025-10-11 02:05:49,151 | INFO     | mean y: 2551398.7411764706
[2025-10-10 22:06:46] 2025-10-11 02:05:49,151 | INFO     | -- intersect: 6402277874.595311
[2025-10-10 22:06:46] 2025-10-11 02:05:49,151 | INFO     | intersect: 6402277874.595311
[2025-10-10 22:06:46] 2025-10-11 02:05:49,151 | INFO     | chi2: 1.6457377480797142
[2025-10-10 22:06:46] 2025-10-11 02:05:49,152 | INFO     | sum of square deviations: 1392881930.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,153 | INFO     | sum of deviations: -4720788841.000002
[2025-10-10 22:06:46] 2025-10-11 02:05:49,153 | INFO     | mean x: 1760142971.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,153 | INFO     | mean y: 2552354.9454545453
[2025-10-10 22:06:46] 2025-10-11 02:05:49,154 | INFO     | -- intersect: 5968071123.6909075
[2025-10-10 22:06:46] 2025-10-11 02:05:49,154 | INFO     | intersect: 5968071123.6909075
[2025-10-10 22:06:46] 2025-10-11 02:05:49,154 | INFO     | chi2: 1.6465258413439532
[2025-10-10 22:06:46] 2025-10-11 02:05:49,154 | INFO     | current chi2=1.6465258413439532 (change=-0.04788692883532478 %)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,155 | INFO     | right removable region: 164
[2025-10-10 22:06:46] 2025-10-11 02:05:49,155 | INFO     | sum of square deviations: 1392881930.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,156 | INFO     | sum of deviations: -31516134279.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,156 | INFO     | mean x: 1760143276.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,157 | INFO     | mean y: 2581357.2545454544
[2025-10-10 22:06:46] 2025-10-11 02:05:49,157 | INFO     | -- intersect: 39828578551.930595
[2025-10-10 22:06:46] 2025-10-11 02:05:49,157 | INFO     | intersect: 39828578551.930595
[2025-10-10 22:06:46] 2025-10-11 02:05:49,157 | INFO     | chi2: 0.19697043256468819
[2025-10-10 22:06:46] 2025-10-11 02:05:49,158 | INFO     | current chi2=0.19697043256468819 (change=88.03148115217519 %)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,158 | INFO     | sum of square deviations: 1270051720.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,159 | INFO     | sum of deviations: -35898919405.49999
[2025-10-10 22:06:46] 2025-10-11 02:05:49,159 | INFO     | mean x: 1760143428.5
[2025-10-10 22:06:46] 2025-10-11 02:05:49,160 | INFO     | mean y: 2586799.75625
[2025-10-10 22:06:46] 2025-10-11 02:05:49,160 | INFO     | -- intersect: 49754298550.394196
[2025-10-10 22:06:46] 2025-10-11 02:05:49,160 | INFO     | intersect: 49754298550.394196
[2025-10-10 22:06:46] 2025-10-11 02:05:49,160 | INFO     | chi2: 0.13258303149018558
[2025-10-10 22:06:46] 2025-10-11 02:05:49,161 | INFO     | current chi2=0.13258303149018558 (change=32.688866159319005 %)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,161 | INFO     | sum of square deviations: 1154663510.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,162 | INFO     | sum of deviations: -36084295630.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,162 | INFO     | mean x: 1760143581.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,163 | INFO     | mean y: 2586974.5483870967
[2025-10-10 22:06:46] 2025-10-11 02:05:49,163 | INFO     | -- intersect: 55008691158.13937
[2025-10-10 22:06:46] 2025-10-11 02:05:49,163 | INFO     | intersect: 55008691158.13937
[2025-10-10 22:06:46] 2025-10-11 02:05:49,163 | INFO     | chi2: 0.10485365191077242
[2025-10-10 22:06:46] 2025-10-11 02:05:49,163 | INFO     | current chi2=0.10485365191077242 (change=20.914727373288198 %)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,164 | INFO     | left removable region: 30
[2025-10-10 22:06:46] 2025-10-11 02:05:49,164 | INFO     | sum of square deviations: 746051197.5
[2025-10-10 22:06:46] 2025-10-11 02:05:49,165 | INFO     | sum of deviations: -23592753877.0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,165 | INFO     | mean x: 1760143855.5
[2025-10-10 22:06:46] 2025-10-11 02:05:49,165 | INFO     | mean y: 2572187.104477612
[2025-10-10 22:06:46] 2025-10-11 02:05:49,166 | INFO     | -- intersect: 55664490444.29668
[2025-10-10 22:06:46] 2025-10-11 02:05:49,166 | INFO     | intersect: 55664490444.29668
[2025-10-10 22:06:46] 2025-10-11 02:05:49,166 | INFO     | chi2: 0.09644518020333702
[2025-10-10 22:06:46] 2025-10-11 02:05:49,166 | INFO     | -- intersect: 55664490444.29668
[2025-10-10 22:06:46] 2025-10-11 02:05:49,167 | INFO     | current memory leak: -31.62 B/s (using 134 data points, chi2=0.10)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,167 | INFO     | could have reported an average CPU frequency of 2519 MHz (9 samples)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,167 | INFO     | ..............................
[2025-10-10 22:06:46] 2025-10-11 02:05:49,167 | INFO     | . Timing measurements:
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . get job = 0 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . initial setup = 2 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . payload setup = 4 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . stage-in = 0 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . payload execution = 10373 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,168 | INFO     | . stage-out = 1 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,169 | INFO     | . log creation = 0 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,169 | INFO     | ..............................
[2025-10-10 22:06:46] 2025-10-11 02:05:49,466 | INFO     | 
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | job summary report
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | --------------------------------------------------
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | PanDA job id: 6837663047
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | task id: 46676269
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | errors: (none)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | pilot state: finished 
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | transexitcode: 0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,467 | INFO     | exeerrorcode: 0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | exeerrordiag: 
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | exitcode: 0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | exitmsg: OK
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | cpuconsumptiontime: 76096 s
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | nevents: 400
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | neventsw: 0
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | pid: 23766
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | pgrp: 23766
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | corecount: 8
[2025-10-10 22:06:46] 2025-10-11 02:05:49,468 | INFO     | event service: False
[2025-10-10 22:06:46] 2025-10-11 02:05:49,469 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 12: 2349175, 10381: 2377834, 10382: 2377833, 10385: 2387071, 10389: 2387273}
[2025-10-10 22:06:46] 2025-10-11 02:05:49,469 | INFO     | --------------------------------------------------
[2025-10-10 22:06:46] 2025-10-11 02:05:49,469 | INFO     | 
[2025-10-10 22:06:46] 2025-10-11 02:05:49,469 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,493 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,494 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | job 6837663047 has completed (purged errors)
[2025-10-10 22:06:46] 2025-10-11 02:05:49,495 | INFO     | overall cleanup function is called
[2025-10-10 22:06:46] 2025-10-11 02:05:50,501 | INFO     | --- collectZombieJob: --- 10, [23766]
[2025-10-10 22:06:46] 2025-10-11 02:05:50,502 | INFO     | zombie collector waiting for pid 23766
[2025-10-10 22:06:46] 2025-10-11 02:05:50,502 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 22:06:46] 2025-10-11 02:05:50,502 | INFO     | collected zombie processes
[2025-10-10 22:06:46] 2025-10-11 02:05:50,502 | INFO     | will attempt to kill all subprocesses of pid=23766
[2025-10-10 22:06:46] 2025-10-11 02:05:50,693 | INFO     | process IDs to be killed: [23766] (in reverse order)
[2025-10-10 22:06:46] 2025-10-11 02:05:50,757 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 22:06:46] 2025-10-11 02:05:50,758 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 22:06:46] 2025-10-11 02:05:50,760 | INFO     | did not find any defunct processes belonging to 23766
[2025-10-10 22:06:46] 2025-10-11 02:05:50,765 | INFO     | did not find any defunct processes belonging to 23766
[2025-10-10 22:06:46] 2025-10-11 02:05:50,765 | INFO     | ready for new job
[2025-10-10 22:06:46] 2025-10-11 02:05:50,765 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 22:06:46] 2025-10-11 02:05:50,767 | INFO     | ***************************************
[2025-10-10 22:06:46] 2025-10-11 02:05:50,767 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 22:06:46] 2025-10-11 02:05:50,768 | INFO     | ***************************************
[2025-10-10 22:06:46] 2025-10-11 02:05:50,768 | INFO     | 
[2025-10-10 22:06:46] 2025-10-11 02:05:50,769 | INFO     | architecture information:
[2025-10-10 22:06:46] 2025-10-11 02:05:50,769 | INFO     | executing command: cat /etc/os-release
[2025-10-10 22:06:46] 2025-10-11 02:05:50,794 | INFO     | cat /etc/os-release:
[2025-10-10 22:06:46] NAME="CentOS Linux"
[2025-10-10 22:06:46] VERSION="7 (Core)"
[2025-10-10 22:06:46] ID="centos"
[2025-10-10 22:06:46] ID_LIKE="rhel fedora"
[2025-10-10 22:06:46] VERSION_ID="7"
[2025-10-10 22:06:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 22:06:46] ANSI_COLOR="0;31"
[2025-10-10 22:06:46] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 22:06:46] HOME_URL="https://www.centos.org/"
[2025-10-10 22:06:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 22:06:46] 
[2025-10-10 22:06:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 22:06:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 22:06:46] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 22:06:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 22:06:46] 
[2025-10-10 22:06:46] 2025-10-11 02:05:50,795 | INFO     | ***************************************
[2025-10-10 22:06:46] 2025-10-11 02:05:51,298 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-10 22:06:46] 2025-10-11 02:05:51,317 | INFO     | sufficient remaining disk space (28106031104 B)
[2025-10-10 22:06:46] 2025-10-11 02:05:51,318 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 22:06:46] 2025-10-11 02:05:51,318 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 22:06:46] 2025-10-11 02:05:51,318 | INFO     | update_server=False
[2025-10-10 22:06:46] 2025-10-11 02:05:51,318 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 22:06:46] 2025-10-11 02:05:51,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:06:46] 2025-10-11 02:05:51,319 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:06:46] 2025-10-11 02:05:51,319 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 22:06:46] 2025-10-11 02:05:51,319 | INFO     | aborting loop
[2025-10-10 22:06:46] 2025-10-11 02:05:51,631 | INFO     | all job control threads have been joined
[2025-10-10 22:06:46] 2025-10-11 02:05:51,841 | INFO     | all payload control threads have been joined
[2025-10-10 22:06:46] 2025-10-11 02:05:51,992 | INFO     | all data control threads have been joined
[2025-10-10 22:06:46] 2025-10-11 02:05:52,320 | INFO     | [job] queue monitor thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,324 | INFO     | [job] retrieve thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,325 | INFO     | [job] job monitor thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,606 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 22:06:46] 2025-10-11 02:05:52,637 | INFO     | [job] control thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,662 | INFO     | [payload] validate_post thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,849 | INFO     | [payload] control thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,892 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:52,998 | INFO     | [data] control thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:53,289 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:53,776 | INFO     | [data] copytool_in thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:53,785 | INFO     | [job] validate thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:53,799 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:53,884 | INFO     | [payload] failed_post thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:54,612 | INFO     | [data] copytool_out thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:05:55,326 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:06:02,363 | INFO     | job.realtimelogging is not enabled
[2025-10-10 22:06:46] 2025-10-11 02:06:03,369 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 22:06:46] 2025-10-11 02:06:21,314 | INFO     | PID=16480 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 22:06:46] 2025-10-11 02:06:21,314 | INFO     | .. there are 3 such processes running
[2025-10-10 22:06:46] 2025-10-11 02:06:21,315 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 22:06:46] 2025-10-11 02:06:21,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 22:06:46] 2025-10-11 02:06:21,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 22:06:46] 2025-10-11 02:06:40,941 | INFO     | [monitor] cgroup control has ended
[2025-10-10 22:06:46] 2025-10-11 02:06:41,358 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139956289783616)>', '<ExcThread(monitor, started 139955837843200)>']
[2025-10-10 22:06:46] 2025-10-11 02:06:41,416 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 22:06:46] 2025-10-11 02:06:41,417 | INFO     | [monitor] control thread has ended
[2025-10-10 22:06:46] 2025-10-11 02:06:46,383 | INFO     | all workflow threads have been joined
[2025-10-10 22:06:46] 2025-10-11 02:06:46,383 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 22:06:46] 2025-10-11 02:06:46,384 | INFO     | traces error code: 0
[2025-10-10 22:06:46] 2025-10-11 02:06:46,384 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 22:06:46] 2025-10-11 02:06:46,489 [wrapper] ==== pilot stdout END ====
[2025-10-10 22:06:46] 2025-10-11 02:06:46,494 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 22:06:46] 2025-10-11 02:06:46,496 [wrapper] pilotpid: 16480
[2025-10-10 22:06:46] 2025-10-11 02:06:46,498 [wrapper] Pilot exit status: 0
[2025-10-10 22:06:46] 2025-10-11 02:06:46,507 [wrapper] pandaids: 6837663047
[2025-10-10 22:06:46] 2025-10-11 02:06:46,535 [wrapper] cleanup supervisor_pilot 13515 16481
[2025-10-10 22:06:46] 2025-10-11 02:06:46,538 [wrapper] Test setup, not cleaning
[2025-10-10 22:06:46] 2025-10-11 02:06:46,540 [wrapper] apfmon messages muted
[2025-10-10 22:06:46] 2025-10-11 02:06:46,542 [wrapper] ==== wrapper stdout END ====
[2025-10-10 22:06:46] 2025-10-11 02:06:46,544 [wrapper] ==== wrapper stderr END ====
[2025-10-10 22:06:46]  *** Error codes and diagnostics ***
[2025-10-10 22:06:46]     "exeErrorCode": 0,
[2025-10-10 22:06:46]     "exeErrorDiag": "",
[2025-10-10 22:06:46]     "pilotErrorCode": 0,
[2025-10-10 22:06:46]     "pilotErrorDiag": "",
[2025-10-10 22:06:46]  *** Listing of results directory ***
[2025-10-10 22:06:46] total 416716
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 10:05 pilot3.tar.gz
[2025-10-10 22:06:46] -rwx------ 1 boincer umatlas     36292 Oct 10 10:31 runpilot2-wrapper.sh
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 10:31 queuedata.json
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas       100 Oct 10 19:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 22:06:46] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 19:12 run_atlas
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas       105 Oct 10 19:12 job.xml
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas 221143710 Oct 10 19:12 EVNT.46676267._001626.pool.root.1
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 19:12 start_atlas.sh
[2025-10-10 22:06:46] drwxrwx--x 2 boincer umatlas      4096 Oct 10 19:12 shared
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 19:12 input.tar.gz
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas         0 Oct 10 19:12 boinc_lockfile
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 19:12 pandaJob.out
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas    975517 Oct 10 19:12 agis_schedconf.cvmfs.json
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas   1560580 Oct 10 19:12 agis_ddmendpoints.agis.ALL.json
[2025-10-10 22:06:46] drwx------ 5 boincer umatlas      4096 Oct 10 19:12 pilot3
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas      5952 Oct 10 22:01 init_data.xml
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas 197895020 Oct 10 22:05 HITS.46676269._040104.pool.root.1
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas       530 Oct 10 22:05 boinc_task_state.xml
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas      1054 Oct 10 22:05 memory_monitor_summary.json
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas    421155 Oct 10 22:05 log.46676269._040104.job.log.tgz.1
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas      7867 Oct 10 22:05 heartbeat.json
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas        95 Oct 10 22:06 pilot_heartbeat.json
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 22:06 boinc_mmap_file
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas        28 Oct 10 22:06 wrapper_checkpoint.txt
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas      4893 Oct 10 22:06 pilotlog.txt
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas   1468732 Oct 10 22:06 log.46676269._040104.job.log.1
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas       357 Oct 10 22:06 output.list
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas       620 Oct 10 22:06 runtime_log
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas   1904640 Oct 10 22:06 result.tar.gz
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas       662 Oct 10 22:06 xjyMDm0KTR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmKbdNDmJQCeHn.diag
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas      8704 Oct 10 22:06 runtime_log.err
[2025-10-10 22:06:46] -rw-r--r-- 1 boincer umatlas     20869 Oct 10 22:06 stderr.txt
[2025-10-10 22:06:46] HITS file was successfully produced:
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas 197895020 Oct 10 22:05 shared/HITS.pool.root.1
[2025-10-10 22:06:46]  *** Contents of shared directory: ***
[2025-10-10 22:06:46] total 411664
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas 221143710 Oct 10 19:12 ATLAS.root_0
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 19:12 start_atlas.sh
[2025-10-10 22:06:46] -rw-r--r-- 2 boincer umatlas    569677 Oct 10 19:12 input.tar.gz
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas 197895020 Oct 10 22:05 HITS.pool.root.1
[2025-10-10 22:06:46] -rw------- 1 boincer umatlas   1904640 Oct 10 22:06 result.tar.gz
22:06:47 (12567): run_atlas exited; CPU time 76283.758415
22:06:47 (12567): called boinc_finish(0)

</stderr_txt>
]]>

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