Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
23:08:40 (1932608): wrapper (7.7.26015): starting
23:08:40 (1932608): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 23:08:40] Arguments: --nthreads 12
[2025-10-10 23:08:40] Threads: 12
[2025-10-10 23:08:40] Checking for CVMFS
[2025-10-10 23:08:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 23:08:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 23:08:41] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 23:08:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 23:08:41] 2.11.0.0 3299214 822 83104 151564 1 188 4979533 6144000 13605 130560 0 16356345 100.000 32312 188 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 23:08:41] CVMFS is ok
[2025-10-10 23:08:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 23:08:41] Checking for apptainer binary...
[2025-10-10 23:08:41] apptainer is not installed, using version from CVMFS
[2025-10-10 23:08:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 23:08:41] radiat0r
[2025-10-10 23:08:41] apptainer works
[2025-10-10 23:08:41] Set ATHENA_PROC_NUMBER=12
[2025-10-10 23:08:41] Set ATHENA_CORE_NUMBER=12
[2025-10-10 23:08:41] Starting ATLAS job with PandaID=6828419084
[2025-10-10 23:08:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 23:57:06]  *** The last 200 lines of the pilot log: ***
[2025-10-10 23:57:06]  workdir=None
[2025-10-10 23:57:06] ]
[2025-10-10 23:57:06] 2025-10-10 23:56:21,276 | INFO     | transferring file log.46376905._043514.job.log.tgz.1 from /var/lib/boinc/slots/25/PanDA_Pilot-6828419084/log.46376905._043514.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-10 23:57:06] 2025-10-10 23:56:21,276 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/25/PanDA_Pilot-6828419084/log.46376905._043514.job.log.tgz.1 /var/lib/boinc/slots/25/log.46376905._043514.j
[2025-10-10 23:57:06] 2025-10-10 23:56:21,299 | INFO     | adding to output.list: log.46376905._043514.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/98/6a/log.46376905._043514.job.log.tg
[2025-10-10 23:57:06] 2025-10-10 23:56:21,299 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 23:57:06] 2025-10-10 23:56:21,299 | INFO     | summary of transferred files:
[2025-10-10 23:57:06] 2025-10-10 23:56:21,300 | INFO     |  -- lfn=log.46376905._043514.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 23:57:06] 2025-10-10 23:56:21,300 | INFO     | stage-out finished correctly
[2025-10-10 23:57:06] 2025-10-10 23:56:21,695 | INFO     | monitor loop #198: job 0:6828419084 is in state 'finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:21,696 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:57:06] 2025-10-10 23:56:22,324 | INFO     | time since job start (2846s) is within the limit (172800.0s)
[2025-10-10 23:57:06] 2025-10-10 23:56:24,198 | INFO     | monitor loop #199: job 0:6828419084 is in state 'finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:24,199 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:57:06] 2025-10-10 23:56:24,330 | INFO     | time since job start (2848s) is within the limit (172800.0s)
[2025-10-10 23:57:06] 2025-10-10 23:56:24,548 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 23:57:06] 2025-10-10 23:56:26,262 | INFO     | job 6828419084 has state=finished
[2025-10-10 23:57:06] 2025-10-10 23:56:26,263 | INFO     | preparing for final server update for job 6828419084 in state='finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:26,263 | INFO     | this job has now completed (state=finished)
[2025-10-10 23:57:06] 2025-10-10 23:56:26,263 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 23:57:06] 2025-10-10 23:56:26,263 | INFO     | log transfer has been attempted: DONE
[2025-10-10 23:57:06] 2025-10-10 23:56:26,264 | INFO     | job 6828419084 has finished - writing final server update
[2025-10-10 23:57:06] 2025-10-10 23:56:26,264 | INFO     | total number of processed events: 400 (read)
[2025-10-10 23:57:06] 2025-10-10 23:56:26,264 | INFO     | executing command: lscpu
[2025-10-10 23:57:06] 2025-10-10 23:56:26,335 | INFO     | time since job start (2850s) is within the limit (172800.0s)
[2025-10-10 23:57:06] 2025-10-10 23:56:26,414 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 23:57:06] 2025-10-10 23:56:26,702 | INFO     | monitor loop #200: job 0:6828419084 is in state 'finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:26,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:57:06] 2025-10-10 23:56:28,339 | INFO     | time since job start (2852s) is within the limit (172800.0s)
[2025-10-10 23:57:06] 2025-10-10 23:56:29,205 | INFO     | monitor loop #201: job 0:6828419084 is in state 'finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:29,206 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:57:06] 2025-10-10 23:56:30,110 | INFO     | PID=1940936 has CPU usage=13.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-10 23:57:06] 2025-10-10 23:56:30,111 | INFO     | .. there are 16 such processes running
[2025-10-10 23:57:06] 2025-10-10 23:56:31,111 | INFO     | time since job start (2855s) is within the limit (172800.0s)
[2025-10-10 23:57:06] 2025-10-10 23:56:31,709 | INFO     | monitor loop #202: job 0:6828419084 is in state 'finished'
[2025-10-10 23:57:06] 2025-10-10 23:56:31,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,327 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 23:57:06] 2025-10-10 23:56:32,389 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2344.976238281249
[2025-10-10 23:57:06] 2025-10-10 23:56:32,473 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6828419084/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,474 | INFO     | extracted standard info from prmon json
[2025-10-10 23:57:06] 2025-10-10 23:56:32,474 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 23:57:06] 2025-10-10 23:56:32,474 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 23:57:06] 2025-10-10 23:56:32,474 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 23:57:06] 2025-10-10 23:56:32,474 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | fitting pss+swap vs Time
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | sum of square deviations: 19832930.0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | sum of deviations: 634456913.0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | mean x: 1760139264.5
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | mean y: 2636255.0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,475 | INFO     | -- intersect: -56304350367.9932
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | intersect: -56304350367.9932
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | chi2: 0.00465261619188173
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | -- intersect: -56304350367.9932
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | current memory leak: 31.99 B/s (using 40 data points, chi2=0.00)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | could have reported an average CPU frequency of 2339 MHz (5 samples)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | ..............................
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . Timing measurements:
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . get job = 0 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . initial setup = 3 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . payload setup = 8 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . stage-in = 0 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . payload execution = 2813 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . stage-out = 0 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,476 | INFO     | . log creation = 0 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,477 | INFO     | ..............................
[2025-10-10 23:57:06] 2025-10-10 23:56:32,757 | INFO     | 
[2025-10-10 23:57:06] 2025-10-10 23:56:32,757 | INFO     | job summary report
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | --------------------------------------------------
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | PanDA job id: 6828419084
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | task id: 46376905
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | errors: (none)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | pilot state: finished 
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | transexitcode: 0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,758 | INFO     | exeerrorcode: 0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | exeerrordiag: 
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | exitcode: 0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | exitmsg: OK
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | cpuconsumptiontime: 29656 s
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | nevents: 400
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | neventsw: 0
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | pid: 1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | pgrp: 1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | corecount: 12
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | event service: False
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | sizes: {0: 2348646, 1: 2348845, 7: 2349107, 11: 2349135, 2826: 2374609, 2827: 2383609, 2830: 2383793, 2838: 2384019}
[2025-10-10 23:57:06] 2025-10-10 23:56:32,759 | INFO     | --------------------------------------------------
[2025-10-10 23:57:06] 2025-10-10 23:56:32,760 | INFO     | 
[2025-10-10 23:57:06] 2025-10-10 23:56:32,760 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-10-10 23:57:06] 2025-10-10 23:56:32,787 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,787 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,787 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,787 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,788 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | job 6828419084 has completed (purged errors)
[2025-10-10 23:57:06] 2025-10-10 23:56:32,789 | INFO     | overall cleanup function is called
[2025-10-10 23:57:06] 2025-10-10 23:56:33,798 | INFO     | --- collectZombieJob: --- 10, [1959104]
[2025-10-10 23:57:06] 2025-10-10 23:56:33,799 | INFO     | zombie collector waiting for pid 1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:33,799 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 23:57:06] 2025-10-10 23:56:33,799 | INFO     | collected zombie processes
[2025-10-10 23:57:06] 2025-10-10 23:56:33,799 | INFO     | will attempt to kill all subprocesses of pid=1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:34,366 | INFO     | process IDs to be killed: [1959104] (in reverse order)
[2025-10-10 23:57:06] 2025-10-10 23:56:34,569 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 23:57:06] 2025-10-10 23:56:34,569 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 23:57:06] 2025-10-10 23:56:34,591 | INFO     | did not find any defunct processes belonging to 1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:34,609 | INFO     | did not find any defunct processes belonging to 1959104
[2025-10-10 23:57:06] 2025-10-10 23:56:34,609 | INFO     | ready for new job
[2025-10-10 23:57:06] 2025-10-10 23:56:34,609 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 23:57:06] 2025-10-10 23:56:34,611 | INFO     | ***************************************
[2025-10-10 23:57:06] 2025-10-10 23:56:34,611 | INFO     | ***  PanDA Pilot version 3.10.5.57  ***
[2025-10-10 23:57:06] 2025-10-10 23:56:34,611 | INFO     | ***************************************
[2025-10-10 23:57:06] 2025-10-10 23:56:34,611 | INFO     | 
[2025-10-10 23:57:06] 2025-10-10 23:56:34,643 | INFO     | architecture information:
[2025-10-10 23:57:06] 2025-10-10 23:56:34,644 | INFO     | executing command: cat /etc/os-release
[2025-10-10 23:57:06] 2025-10-10 23:56:34,661 | INFO     | cat /etc/os-release:
[2025-10-10 23:57:06] NAME="CentOS Linux"
[2025-10-10 23:57:06] VERSION="7 (Core)"
[2025-10-10 23:57:06] ID="centos"
[2025-10-10 23:57:06] ID_LIKE="rhel fedora"
[2025-10-10 23:57:06] VERSION_ID="7"
[2025-10-10 23:57:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 23:57:06] ANSI_COLOR="0;31"
[2025-10-10 23:57:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 23:57:06] HOME_URL="https://www.centos.org/"
[2025-10-10 23:57:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 23:57:06] 
[2025-10-10 23:57:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 23:57:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 23:57:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 23:57:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 23:57:06] 
[2025-10-10 23:57:06] 2025-10-10 23:56:34,662 | INFO     | ***************************************
[2025-10-10 23:57:06] 2025-10-10 23:56:35,162 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-10-10 23:57:06] 2025-10-10 23:56:35,186 | INFO     | sufficient remaining disk space (1725081583616 B)
[2025-10-10 23:57:06] 2025-10-10 23:56:35,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 23:57:06] 2025-10-10 23:56:35,192 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 23:57:06] 2025-10-10 23:56:35,193 | INFO     | update_server=False
[2025-10-10 23:57:06] 2025-10-10 23:56:35,193 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 23:57:06] 2025-10-10 23:56:35,193 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 23:57:06] 2025-10-10 23:56:35,194 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 23:57:06] 2025-10-10 23:56:35,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:57:06] 2025-10-10 23:56:35,214 | INFO     | aborting loop
[2025-10-10 23:57:06] 2025-10-10 23:56:35,422 | INFO     | all payload control threads have been joined
[2025-10-10 23:57:06] 2025-10-10 23:56:35,623 | INFO     | all data control threads have been joined
[2025-10-10 23:57:06] 2025-10-10 23:56:36,138 | INFO     | all job control threads have been joined
[2025-10-10 23:57:06] 2025-10-10 23:56:36,195 | INFO     | [job] retrieve thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,206 | INFO     | [data] copytool_in thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,220 | INFO     | [job] job monitor thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,426 | INFO     | [payload] control thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,462 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,629 | INFO     | [data] control thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,641 | INFO     | [job] validate thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:36,807 | INFO     | [payload] failed_post thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,142 | INFO     | [job] control thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,164 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,174 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,198 | INFO     | [data] copytool_out thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,290 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:37,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:57:06] 2025-10-10 23:56:37,566 | INFO     | [payload] validate_post thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:38,554 | INFO     | [job] queue monitor thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:56:39,201 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 23:57:06] 2025-10-10 23:57:00,298 | INFO     | [monitor] cgroup control has ended
[2025-10-10 23:57:06] 2025-10-10 23:57:00,610 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139820006532928)>', '<ExcThread(monitor, started 139819439093504)>']
[2025-10-10 23:57:06] 2025-10-10 23:57:04,887 | INFO     | PID=1940936 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 23:57:06] 2025-10-10 23:57:04,887 | INFO     | .. there are 17 such processes running
[2025-10-10 23:57:06] 2025-10-10 23:57:04,888 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 23:57:06] 2025-10-10 23:57:04,888 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 23:57:06] 2025-10-10 23:57:04,888 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 23:57:06] 2025-10-10 23:57:04,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 23:57:06] 2025-10-10 23:57:04,888 | INFO     | [monitor] control thread has ended
[2025-10-10 23:57:06] 2025-10-10 23:57:05,634 | INFO     | all workflow threads have been joined
[2025-10-10 23:57:06] 2025-10-10 23:57:05,635 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 23:57:06] 2025-10-10 23:57:05,635 | INFO     | traces error code: 0
[2025-10-10 23:57:06] 2025-10-10 23:57:05,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 23:57:06] 2025-10-10 23:57:05,757 [wrapper] ==== pilot stdout END ====
[2025-10-10 23:57:06] 2025-10-10 23:57:05,761 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 23:57:06] 2025-10-10 23:57:05,764 [wrapper] pilotpid: 1940936
[2025-10-10 23:57:06] 2025-10-10 23:57:05,767 [wrapper] Pilot exit status: 0
[2025-10-10 23:57:06] 2025-10-10 23:57:05,778 [wrapper] pandaids: 6828419084
[2025-10-10 23:57:06] 2025-10-10 23:57:05,912 [wrapper] cleanup supervisor_pilot 2204359 1940937
[2025-10-10 23:57:06] 2025-10-10 23:57:05,918 [wrapper] Test setup, not cleaning
[2025-10-10 23:57:06] 2025-10-10 23:57:05,922 [wrapper] apfmon messages muted
[2025-10-10 23:57:06] 2025-10-10 23:57:05,925 [wrapper] ==== wrapper stdout END ====
[2025-10-10 23:57:06] 2025-10-10 23:57:05,927 [wrapper] ==== wrapper stderr END ====
[2025-10-10 23:57:06]  *** Error codes and diagnostics ***
[2025-10-10 23:57:06]     "exeErrorCode": 0,
[2025-10-10 23:57:06]     "exeErrorDiag": "",
[2025-10-10 23:57:06]     "pilotErrorCode": 0,
[2025-10-10 23:57:06]     "pilotErrorDiag": "",
[2025-10-10 23:57:06]  *** Listing of results directory ***
[2025-10-10 23:57:06] total 392500
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc      5112 Oct  3 15:20 queuedata.json
[2025-10-10 23:57:06] -rwx------ 1 boinc boinc     36292 Oct  3 15:21 runpilot2-wrapper.sh
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc    552446 Oct  3 15:21 pilot3.tar.gz
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc       100 Oct 10 23:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 23:57:06] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 23:08 run_atlas
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc       105 Oct 10 23:08 job.xml
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc     15120 Oct 10 23:08 start_atlas.sh
[2025-10-10 23:57:06] drwxrwx--x 2 boinc boinc      4096 Oct 10 23:08 shared
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc    565596 Oct 10 23:08 input.tar.gz
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc      9396 Oct 10 23:08 init_data.xml
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc 213697318 Oct 10 23:08 EVNT.46376901._001507.pool.root.1
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc         0 Oct 10 23:08 boinc_setup_complete
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc         0 Oct 10 23:08 boinc_lockfile
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc      2519 Oct 10 23:08 pandaJob.out
[2025-10-10 23:57:06] -rw------- 1 boinc boinc    975517 Oct 10 23:08 agis_schedconf.cvmfs.json
[2025-10-10 23:57:06] -rw------- 1 boinc boinc   1560580 Oct 10 23:08 agis_ddmendpoints.agis.ALL.json
[2025-10-10 23:57:06] drwx------ 4 boinc boinc      4096 Oct 10 23:08 pilot3
[2025-10-10 23:57:06] -rw------- 1 boinc boinc 182745714 Oct 10 23:55 HITS.46376905._043514.pool.root.1
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc       529 Oct 10 23:55 boinc_task_state.xml
[2025-10-10 23:57:06] -rw------- 1 boinc boinc      1028 Oct 10 23:56 memory_monitor_summary.json
[2025-10-10 23:57:06] -rw------- 1 boinc boinc    359418 Oct 10 23:56 log.46376905._043514.job.log.tgz.1
[2025-10-10 23:57:06] -rw------- 1 boinc boinc      7742 Oct 10 23:56 heartbeat.json
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc      8192 Oct 10 23:57 boinc_mmap_file
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc        27 Oct 10 23:57 wrapper_checkpoint.txt
[2025-10-10 23:57:06] -rw------- 1 boinc boinc        95 Oct 10 23:57 pilot_heartbeat.json
[2025-10-10 23:57:06] -rw------- 1 boinc boinc      4827 Oct 10 23:57 pilotlog.txt
[2025-10-10 23:57:06] -rw------- 1 boinc boinc    426293 Oct 10 23:57 log.46376905._043514.job.log.1
[2025-10-10 23:57:06] -rw------- 1 boinc boinc       357 Oct 10 23:57 output.list
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc       620 Oct 10 23:57 runtime_log
[2025-10-10 23:57:06] -rw------- 1 boinc boinc    808960 Oct 10 23:57 result.tar.gz
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc      8672 Oct 10 23:57 runtime_log.err
[2025-10-10 23:57:06] -rw------- 1 boinc boinc       644 Oct 10 23:57 maiLDmolwO8n9Rq4apOajLDm4fhM0noT9bVof3QYDmTjBMDmD1LSWm.diag
[2025-10-10 23:57:06] -rw-r--r-- 1 boinc boinc     22078 Oct 10 23:57 stderr.txt
[2025-10-10 23:57:06] HITS file was successfully produced:
[2025-10-10 23:57:06] -rw------- 1 boinc boinc 182745714 Oct 10 23:55 shared/HITS.pool.root.1
[2025-10-10 23:57:06]  *** Contents of shared directory: ***
[2025-10-10 23:57:06] total 388528
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc     15120 Oct 10 23:08 start_atlas.sh
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc    565596 Oct 10 23:08 input.tar.gz
[2025-10-10 23:57:06] -rw-r--r-- 2 boinc boinc 213697318 Oct 10 23:08 ATLAS.root_0
[2025-10-10 23:57:06] -rw------- 1 boinc boinc 182745714 Oct 10 23:55 HITS.pool.root.1
[2025-10-10 23:57:06] -rw------- 1 boinc boinc    808960 Oct 10 23:57 result.tar.gz
23:57:07 (1932608): run_atlas exited; CPU time 29831.590105
23:57:07 (1932608): called boinc_finish(0)

</stderr_txt>
]]>

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