Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:26 (3420371): wrapper (7.7.26015): starting
00:01:26 (3420371): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 00:01:26] Arguments: --nthreads 12
[2025-10-11 00:01:26] Threads: 12
[2025-10-11 00:01:26] Checking for CVMFS
[2025-10-11 00:01:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:01:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:01:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:01:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:01:27] 2.13.2.0 129280 114043 224028 151571 3 21 21782855 39288832 11985 16776704 1 102638658 99.474 145054603 34547 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 00:01:27] CVMFS is ok
[2025-10-11 00:01:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:01:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:01:27] Further information can be found at the LHC@home message board.
[2025-10-11 00:01:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:01:27] Checking for apptainer binary...
[2025-10-11 00:01:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:01:27] Running /usr/bin/apptainer --version
[2025-10-11 00:01:27] apptainer version 1.4.3-1.el9
[2025-10-11 00:01:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:01:27] c-210-20.aglt2.org
[2025-10-11 00:01:27] apptainer works
[2025-10-11 00:01:28] Set ATHENA_PROC_NUMBER=12
[2025-10-11 00:01:28] Set ATHENA_CORE_NUMBER=12
[2025-10-11 00:01:28] Starting ATLAS job with PandaID=6837705058
[2025-10-11 00:01:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:49:50 (3683407): wrapper (7.7.26015): starting
01:49:50 (3683407): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 01:49:50] Arguments: --nthreads 8
[2025-10-11 01:49:50] Threads: 8
[2025-10-11 01:49:50] This job has been restarted, cleaning up previous attempt
[2025-10-11 01:49:50] Checking for CVMFS
[2025-10-11 01:49:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 01:49:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 01:49:51] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 01:49:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 01:49:52] 2.13.2.0 129280 114152 235484 151573 3 301 21900431 39288833 12050 16776704 1 102965936 99.476 145057715 34547 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 01:49:52] CVMFS is ok
[2025-10-11 01:49:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 01:49:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 01:49:52] Further information can be found at the LHC@home message board.
[2025-10-11 01:49:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 01:49:52] Checking for apptainer binary...
[2025-10-11 01:49:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 01:49:52] Running /usr/bin/apptainer --version
[2025-10-11 01:49:52] apptainer version 1.4.3-1.el9
[2025-10-11 01:49:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 01:49:54] c-210-20.aglt2.org
[2025-10-11 01:49:54] apptainer works
[2025-10-11 01:49:54] Set ATHENA_PROC_NUMBER=8
[2025-10-11 01:49:54] Set ATHENA_CORE_NUMBER=8
[2025-10-11 01:49:54] Starting ATLAS job with PandaID=6837705058
[2025-10-11 01:49:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 12:45:00]  *** The last 200 lines of the pilot log: ***
[2025-10-11 12:45:00] 2025-10-11 16:44:05,494 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 12:45:00] 2025-10-11 16:44:05,507 | INFO     | fitting pss+swap vs Time
[2025-10-11 12:45:00] 2025-10-11 16:44:05,508 | INFO     | sum of square deviations: 81672033398.04988
[2025-10-11 12:45:00] 2025-10-11 16:44:05,520 | INFO     | sum of deviations: 131110580490.38512
[2025-10-11 12:45:00] 2025-10-11 16:44:05,520 | INFO     | mean x: 1760181447.6131046
[2025-10-11 12:45:00] 2025-10-11 16:44:05,520 | INFO     | mean y: 2481088.263650546
[2025-10-11 12:45:00] 2025-10-11 16:44:05,521 | INFO     | -- intersect: -2823191320.799584
[2025-10-11 12:45:00] 2025-10-11 16:44:05,521 | INFO     | intersect: -2823191320.799584
[2025-10-11 12:45:00] 2025-10-11 16:44:05,522 | INFO     | chi2: 4.425397095595721
[2025-10-11 12:45:00] 2025-10-11 16:44:05,523 | INFO     | sum of square deviations: 79775914024.15576
[2025-10-11 12:45:00] 2025-10-11 16:44:05,535 | INFO     | sum of deviations: 254551976509.54254
[2025-10-11 12:45:00] 2025-10-11 16:44:05,535 | INFO     | mean x: 1760181295.1179245
[2025-10-11 12:45:00] 2025-10-11 16:44:05,535 | INFO     | mean y: 2490985.926100629
[2025-10-11 12:45:00] 2025-10-11 16:44:05,535 | INFO     | -- intersect: -5613961463.013869
[2025-10-11 12:45:00] 2025-10-11 16:44:05,536 | INFO     | intersect: -5613961463.013869
[2025-10-11 12:45:00] 2025-10-11 16:44:05,537 | INFO     | chi2: 2.2080579825065683
[2025-10-11 12:45:00] 2025-10-11 16:44:05,537 | INFO     | current chi2=2.2080579825065683 (change=50.10486212177232 %)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,538 | INFO     | sum of square deviations: 77909259484.9542
[2025-10-11 12:45:00] 2025-10-11 16:44:05,549 | INFO     | sum of deviations: 252004800927.98724
[2025-10-11 12:45:00] 2025-10-11 16:44:05,549 | INFO     | mean x: 1760181142.6180665
[2025-10-11 12:45:00] 2025-10-11 16:44:05,549 | INFO     | mean y: 2490777.825673534
[2025-10-11 12:45:00] 2025-10-11 16:44:05,549 | INFO     | -- intersect: -5690980080.132177
[2025-10-11 12:45:00] 2025-10-11 16:44:05,549 | INFO     | intersect: -5690980080.132177
[2025-10-11 12:45:00] 2025-10-11 16:44:05,550 | INFO     | chi2: 2.2079742952237034
[2025-10-11 12:45:00] 2025-10-11 16:44:05,551 | INFO     | current chi2=2.2079742952237034 (change=0.0037900853839850732 %)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,551 | INFO     | right removable region: 630
[2025-10-11 12:45:00] 2025-10-11 16:44:05,552 | INFO     | sum of square deviations: 79775477809.9372
[2025-10-11 12:45:00] 2025-10-11 16:44:05,563 | INFO     | sum of deviations: -11298541239.597572
[2025-10-11 12:45:00] 2025-10-11 16:44:05,566 | INFO     | mean x: 1760181600.125786
[2025-10-11 12:45:00] 2025-10-11 16:44:05,566 | INFO     | mean y: 2492515.9449685533
[2025-10-11 12:45:00] 2025-10-11 16:44:05,566 | INFO     | -- intersect: 251785719.12180695
[2025-10-11 12:45:00] 2025-10-11 16:44:05,566 | INFO     | intersect: 251785719.12180695
[2025-10-11 12:45:00] 2025-10-11 16:44:05,567 | INFO     | chi2: 2.3018634903018116
[2025-10-11 12:45:00] 2025-10-11 16:44:05,568 | INFO     | current chi2=2.3018634903018116 (change=47.98515386127291 %)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,569 | INFO     | sum of square deviations: 77908581402.16484
[2025-10-11 12:45:00] 2025-10-11 16:44:05,604 | INFO     | sum of deviations: -28033890578.3359
[2025-10-11 12:45:00] 2025-10-11 16:44:05,604 | INFO     | mean x: 1760181752.6354992
[2025-10-11 12:45:00] 2025-10-11 16:44:05,604 | INFO     | mean y: 2493878.0507131536
[2025-10-11 12:45:00] 2025-10-11 16:44:05,604 | INFO     | -- intersect: 635861111.329536
[2025-10-11 12:45:00] 2025-10-11 16:44:05,605 | INFO     | intersect: 635861111.329536
[2025-10-11 12:45:00] 2025-10-11 16:44:05,614 | INFO     | chi2: 2.2634593719956597
[2025-10-11 12:45:00] 2025-10-11 16:44:05,614 | INFO     | current chi2=2.2634593719956597 (change=1.66839252057977 %)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,614 | INFO     | left removable region: 20
[2025-10-11 12:45:00] 2025-10-11 16:44:05,615 | INFO     | sum of square deviations: 70386203352.12419
[2025-10-11 12:45:00] 2025-10-11 16:44:05,639 | INFO     | sum of deviations: 92109754946.64595
[2025-10-11 12:45:00] 2025-10-11 16:44:05,640 | INFO     | mean x: 1760181722.1508198
[2025-10-11 12:45:00] 2025-10-11 16:44:05,640 | INFO     | mean y: 2504011.308196721
[2025-10-11 12:45:00] 2025-10-11 16:44:05,640 | INFO     | -- intersect: -2300929039.0267215
[2025-10-11 12:45:00] 2025-10-11 16:44:05,640 | INFO     | intersect: -2300929039.0267215
[2025-10-11 12:45:00] 2025-10-11 16:44:05,641 | INFO     | chi2: 0.009265648025138677
[2025-10-11 12:45:00] 2025-10-11 16:44:05,642 | INFO     | -- intersect: -2300929039.0267215
[2025-10-11 12:45:00] 2025-10-11 16:44:05,642 | INFO     | current memory leak: 1.31 B/s (using 610 data points, chi2=0.01)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,643 | INFO     | could have reported an average CPU frequency of 2600 MHz (25 samples)
[2025-10-11 12:45:00] 2025-10-11 16:44:05,643 | INFO     | ..............................
[2025-10-11 12:45:00] 2025-10-11 16:44:05,643 | INFO     | . Timing measurements:
[2025-10-11 12:45:00] 2025-10-11 16:44:05,643 | INFO     | . get job = 0 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . initial setup = 2 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . payload setup = 19 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . stage-in = 0 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . payload execution = 39088 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . stage-out = 8 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | . log creation = 1 s
[2025-10-11 12:45:00] 2025-10-11 16:44:05,644 | INFO     | ..............................
[2025-10-11 12:45:00] 2025-10-11 16:44:06,198 | INFO     | 
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | job summary report
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | --------------------------------------------------
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | PanDA job id: 6837705058
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | task id: 46676269
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | errors: (none)
[2025-10-11 12:45:00] 2025-10-11 16:44:06,199 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | pilot state: finished 
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | transexitcode: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | exeerrorcode: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | exeerrordiag: 
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | exitcode: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | exitmsg: OK
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | cpuconsumptiontime: 55026 s
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | nevents: 400
[2025-10-11 12:45:00] 2025-10-11 16:44:06,200 | INFO     | neventsw: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | pid: 3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | pgrp: 3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | corecount: 8
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | event service: False
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 13: 2348913, 20: 2349231, 24: 2349259, 39111: 2391651, 39122: 2400649, 39123: 2400705, 39168: 2400963}
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | --------------------------------------------------
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | 
[2025-10-11 12:45:00] 2025-10-11 16:44:06,201 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 12:45:00] 2025-10-11 16:44:06,390 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,391 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,392 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 12:45:00] 2025-10-11 16:44:06,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,393 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 12:45:00] 2025-10-11 16:44:06,393 | INFO     | job 6837705058 has completed (purged errors)
[2025-10-11 12:45:00] 2025-10-11 16:44:06,393 | INFO     | overall cleanup function is called
[2025-10-11 12:45:00] 2025-10-11 16:44:07,432 | INFO     | --- collectZombieJob: --- 10, [3707707]
[2025-10-11 12:45:00] 2025-10-11 16:44:07,433 | INFO     | zombie collector waiting for pid 3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:07,433 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 12:45:00] 2025-10-11 16:44:07,433 | INFO     | collected zombie processes
[2025-10-11 12:45:00] 2025-10-11 16:44:07,433 | INFO     | will attempt to kill all subprocesses of pid=3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:09,377 | INFO     | process IDs to be killed: [3707707] (in reverse order)
[2025-10-11 12:45:00] 2025-10-11 16:44:09,867 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 12:45:00] 2025-10-11 16:44:09,868 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 12:45:00] 2025-10-11 16:44:09,990 | INFO     | did not find any defunct processes belonging to 3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:10,028 | INFO     | did not find any defunct processes belonging to 3707707
[2025-10-11 12:45:00] 2025-10-11 16:44:10,029 | INFO     | ready for new job
[2025-10-11 12:45:00] 2025-10-11 16:44:10,029 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 12:45:00] 2025-10-11 16:44:10,033 | INFO     | ***************************************
[2025-10-11 12:45:00] 2025-10-11 16:44:10,033 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 12:45:00] 2025-10-11 16:44:10,034 | INFO     | ***************************************
[2025-10-11 12:45:00] 2025-10-11 16:44:10,034 | INFO     | 
[2025-10-11 12:45:00] 2025-10-11 16:44:10,036 | INFO     | architecture information:
[2025-10-11 12:45:00] 2025-10-11 16:44:10,037 | INFO     | executing command: cat /etc/os-release
[2025-10-11 12:45:00] 2025-10-11 16:44:10,165 | INFO     | cat /etc/os-release:
[2025-10-11 12:45:00] NAME="CentOS Linux"
[2025-10-11 12:45:00] VERSION="7 (Core)"
[2025-10-11 12:45:00] ID="centos"
[2025-10-11 12:45:00] ID_LIKE="rhel fedora"
[2025-10-11 12:45:00] VERSION_ID="7"
[2025-10-11 12:45:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 12:45:00] ANSI_COLOR="0;31"
[2025-10-11 12:45:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 12:45:00] HOME_URL="https://www.centos.org/"
[2025-10-11 12:45:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 12:45:00] 
[2025-10-11 12:45:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 12:45:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 12:45:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 12:45:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 12:45:00] 
[2025-10-11 12:45:00] 2025-10-11 16:44:10,165 | INFO     | ***************************************
[2025-10-11 12:45:00] 2025-10-11 16:44:10,669 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 12:45:00] 2025-10-11 16:44:10,955 | INFO     | sufficient remaining disk space (52763295744 B)
[2025-10-11 12:45:00] 2025-10-11 16:44:10,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 12:45:00] 2025-10-11 16:44:10,956 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 12:45:00] 2025-10-11 16:44:10,956 | INFO     | update_server=False
[2025-10-11 12:45:00] 2025-10-11 16:44:10,956 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 12:45:00] 2025-10-11 16:44:10,956 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:45:00] 2025-10-11 16:44:11,175 | INFO     | all data control threads have been joined
[2025-10-11 12:45:00] 2025-10-11 16:44:11,234 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 12:45:00] 2025-10-11 16:44:11,235 | INFO     | all job control threads have been joined
[2025-10-11 12:45:00] 2025-10-11 16:44:11,344 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 12:45:00] 2025-10-11 16:44:11,345 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 12:45:00] 2025-10-11 16:44:11,345 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 12:45:00] 2025-10-11 16:44:11,345 | INFO     | will abort loop
[2025-10-11 12:45:00] 2025-10-11 16:44:11,790 | INFO     | all payload control threads have been joined
[2025-10-11 12:45:00] 2025-10-11 16:44:11,962 | INFO     | [job] retrieve thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:11,963 | INFO     | [job] queue monitor thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,003 | INFO     | [data] copytool_in thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,139 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,182 | INFO     | [data] control thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,242 | INFO     | [job] control thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,351 | INFO     | [job] job monitor thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,662 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 12:45:00] 2025-10-11 16:44:12,715 | INFO     | [payload] failed_post thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,725 | INFO     | [payload] validate_post thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,816 | INFO     | [payload] control thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,858 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:12,876 | INFO     | [job] validate thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:13,016 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:13,111 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:13,242 | INFO     | [data] copytool_out thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:16,677 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 12:45:00] 2025-10-11 16:44:38,723 | INFO     | PID=3693726 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 12:45:00] 2025-10-11 16:44:38,723 | INFO     | .. there are 14 such processes running
[2025-10-11 12:45:00] 2025-10-11 16:44:38,724 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 12:45:00] 2025-10-11 16:44:38,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 12:45:00] 2025-10-11 16:44:38,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 12:45:00] 2025-10-11 16:44:50,697 | INFO     | [monitor] cgroup control has ended
[2025-10-11 12:45:00] 2025-10-11 16:44:50,988 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140017434728256)>', '<ExcThread(monitor, started 140017158555392)>']
[2025-10-11 12:45:00] 2025-10-11 16:44:51,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 12:45:00] 2025-10-11 16:44:51,801 | INFO     | [monitor] control thread has ended
[2025-10-11 12:45:00] 2025-10-11 16:44:56,014 | INFO     | all workflow threads have been joined
[2025-10-11 12:45:00] 2025-10-11 16:44:56,015 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 12:45:00] 2025-10-11 16:44:56,028 | INFO     | traces error code: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:56,028 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 12:45:00] 2025-10-11 16:44:58,129 [wrapper] ==== pilot stdout END ====
[2025-10-11 12:45:00] 2025-10-11 16:44:58,192 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 12:45:00] 2025-10-11 16:44:58,235 [wrapper] pilotpid: 3693726
[2025-10-11 12:45:00] 2025-10-11 16:44:58,309 [wrapper] Pilot exit status: 0
[2025-10-11 12:45:00] 2025-10-11 16:44:58,530 [wrapper] pandaids: 6837705058 6837705058
[2025-10-11 12:45:00] 2025-10-11 16:44:59,259 [wrapper] cleanup supervisor_pilot  445925 3693727
[2025-10-11 12:45:00] 2025-10-11 16:44:59,312 [wrapper] Test setup, not cleaning
[2025-10-11 12:45:00] 2025-10-11 16:44:59,368 [wrapper] apfmon messages muted
[2025-10-11 12:45:00] 2025-10-11 16:44:59,402 [wrapper] ==== wrapper stdout END ====
[2025-10-11 12:45:00] 2025-10-11 16:44:59,414 [wrapper] ==== wrapper stderr END ====
[2025-10-11 12:45:00]  *** Error codes and diagnostics ***
[2025-10-11 12:45:00]     "exeErrorCode": 0,
[2025-10-11 12:45:00]     "exeErrorDiag": "",
[2025-10-11 12:45:00]     "pilotErrorCode": 0,
[2025-10-11 12:45:00]     "pilotErrorDiag": "",
[2025-10-11 12:45:00]  *** Listing of results directory ***
[2025-10-11 12:45:00] total 634940
[2025-10-11 12:45:00] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 13:01 pilot3.tar.gz
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 13:06 queuedata.json
[2025-10-11 12:45:00] -rwx------. 1 boincer umatlas     36292 Oct 10 13:07 runpilot2-wrapper.sh
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 12:45:00] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:01 run_atlas
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:01 job.xml
[2025-10-11 12:45:00] -rw-r--r--. 3 boincer umatlas 218984613 Oct 11 00:01 EVNT.46676267._001709.pool.root.1
[2025-10-11 12:45:00] -rw-r--r--. 3 boincer umatlas 218984613 Oct 11 00:01 ATLAS.root_0
[2025-10-11 12:45:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 12:45:00] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:01 shared
[2025-10-11 12:45:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 00:01 input.tar.gz
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:01 boinc_lockfile
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 01:49 pandaJob.out
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas    975533 Oct 11 01:50 agis_schedconf.cvmfs.json
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas 197159312 Oct 11 12:40 HITS.46676269._042205.pool.root.1
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas       531 Oct 11 12:40 boinc_task_state.xml
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas      6661 Oct 11 12:40 init_data.xml
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas      1054 Oct 11 12:43 memory_monitor_summary.json
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas   1560580 Oct 11 12:43 agis_ddmendpoints.agis.ALL.json
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas    774957 Oct 11 12:43 log.46676269._042205.job.log.tgz.1
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas        96 Oct 11 12:44 pilot_heartbeat.json
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas      7852 Oct 11 12:44 heartbeat.json
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 12:44 boinc_mmap_file
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas        28 Oct 11 12:44 wrapper_checkpoint.txt
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas      5010 Oct 11 12:44 pilotlog.txt
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas   4794125 Oct 11 12:44 log.46676269._042205.job.log.1
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas       357 Oct 11 12:45 output.list
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas       620 Oct 11 12:45 runtime_log
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas   5591040 Oct 11 12:45 result.tar.gz
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas      8789 Oct 11 12:45 runtime_log.err
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas       788 Oct 11 12:45 mVgNDm0lVR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmnxdNDmqqX1in.diag
[2025-10-11 12:45:00] -rw-r--r--. 1 boincer umatlas     23215 Oct 11 12:45 stderr.txt
[2025-10-11 12:45:00] HITS file was successfully produced:
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas 197159312 Oct 11 12:40 shared/HITS.pool.root.1
[2025-10-11 12:45:00]  *** Contents of shared directory: ***
[2025-10-11 12:45:00] total 412436
[2025-10-11 12:45:00] -rw-r--r--. 3 boincer umatlas 218984613 Oct 11 00:01 ATLAS.root_0
[2025-10-11 12:45:00] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 12:45:00] -rw-r--r--. 2 boincer umatlas    569680 Oct 11 00:01 input.tar.gz
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas 197159312 Oct 11 12:40 HITS.pool.root.1
[2025-10-11 12:45:00] -rw-------. 1 boincer umatlas   5591040 Oct 11 12:45 result.tar.gz
12:45:02 (3683407): run_atlas exited; CPU time 55883.507071
12:45:02 (3683407): called boinc_finish(0)

</stderr_txt>
]]>

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