Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:23:01 (3040199): wrapper (7.7.26015): starting
15:23:01 (3040199): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 15:23:01] Arguments: --nthreads 12
[2025-10-10 15:23:01] Threads: 12
[2025-10-10 15:23:01] Checking for CVMFS
[2025-10-10 15:23:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 15:23:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 15:23:02] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 15:23:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 15:23:03] 2.11.5.0 2605 29172 208308 151564 0 58 36317751 45568000 21508 130560 0 276663410 99.860 117338713 28225 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-10-10 15:23:03] CVMFS is ok
[2025-10-10 15:23:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 15:23:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 15:23:03] Further information can be found at the LHC@home message board.
[2025-10-10 15:23:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 15:23:03] Checking for apptainer binary...
[2025-10-10 15:23:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 15:23:03] Running /usr/bin/apptainer --version
[2025-10-10 15:23:04] apptainer version 1.4.1-1.el9
[2025-10-10 15:23:04] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 15:23:05] wns0089.triumf.lcg
[2025-10-10 15:23:05] apptainer works
[2025-10-10 15:23:05] Set ATHENA_PROC_NUMBER=12
[2025-10-10 15:23:05] Set ATHENA_CORE_NUMBER=12
[2025-10-10 15:23:05] Starting ATLAS job with PandaID=6837731603
[2025-10-10 15:23:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 15:29:50]  *** The last 200 lines of the pilot log: ***
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | WARNING  | wrong length of table data, x=[1760135153.0], y=[1184.0] (must be same and length>=4)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | could have reported an average CPU frequency of 2656 MHz (4 samples)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . Timing measurements:
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . get job = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . initial setup = 4 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload setup = 41 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-in = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload execution = 61 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-out = 1 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . log creation = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837731603/pilotlog.txt
[2025-10-10 15:29:50] 2025-10-10 22:28:52,221 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-10-10 15:29:50] - Log from pilotlog.txt -
[2025-10-10 15:29:50] 2025-10-10 22:28:52,161 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837731603/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,166 | INFO     | extracted standard info from prmon json
[2025-10-10 15:29:50] 2025-10-10 22:28:52,166 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | WARNING  | wrong length of table data, x=[1760135153.0], y=[1184.0] (must be same and length>=4)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | could have reported an average CPU frequency of 2656 MHz (4 samples)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . Timing measurements:
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . get job = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . initial setup = 4 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload setup = 41 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-in = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload execution = 61 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-out = 1 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . log creation = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837731603/pilotlog.txt
[2025-10-10 15:29:50] 2025-10-10 22:28:52,221 | WARNING  | 
[2025-10-10 15:29:50] [begin log extracts]
[2025-10-10 15:29:50] - Log from pilotlog.txt -
[2025-10-10 15:29:50] 2025-10-10 22:28:52,161 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6837731603/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,166 | INFO     | extracted standard info from prmon json
[2025-10-10 15:29:50] 2025-10-10 22:28:52,166 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 15:29:50] 2025-10-10 22:28:52,167 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | WARNING  | wrong length of table data, x=[1760135153.0], y=[1184.0] (must be same and length>=4)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | could have reported an average CPU frequency of 2656 MHz (4 samples)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,175 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . Timing measurements:
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . get job = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . initial setup = 4 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload setup = 41 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-in = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . payload execution = 61 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . stage-out = 1 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | . log creation = 0 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | ..............................
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-10-10 15:29:50] 2025-10-10 22:28:52,176 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6837731603/pilotlog.txt
[2025-10-10 15:29:50] [end log extracts]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,221 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,222 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-10-10 15:29:50] 2025-10-10 22:28:52,686 | INFO     | 
[2025-10-10 15:29:50] 2025-10-10 22:28:52,686 | INFO     | job summary report
[2025-10-10 15:29:50] 2025-10-10 22:28:52,686 | INFO     | --------------------------------------------------
[2025-10-10 15:29:50] 2025-10-10 22:28:52,686 | INFO     | PanDA job id: 6837731603
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | task id: 46676269
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-10-10 15:26:19,748 CRITICAL Transform executor raised TransformValidationExceptio
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | pilot state: failed 
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | transexitcode: 65
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | exeerrorcode: 65
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | exitcode: 65
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | cpuconsumptiontime: 19 s
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | nevents: 0
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | neventsw: 0
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | pid: 3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | pgrp: 3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | corecount: 12
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | event service: False
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | sizes: {0: 2348683, 1: 2348882, 2: 2348882, 13: 2348910, 24: 2348966, 29: 2349256, 35: 2349412, 107: 2372618, 110: 2376910, 111: 2376938, 250: 2377104}
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | --------------------------------------------------
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | 
[2025-10-10 15:29:50] 2025-10-10 22:28:52,687 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,808 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | job 6837731603 has completed (purged errors)
[2025-10-10 15:29:50] 2025-10-10 22:28:52,809 | INFO     | overall cleanup function is called
[2025-10-10 15:29:50] 2025-10-10 22:28:53,158 | INFO     | PID=3044019 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:29:50] 2025-10-10 22:28:53,159 | INFO     | .. there are 42 such processes running
[2025-10-10 15:29:50] 2025-10-10 22:28:53,816 | INFO     | --- collectZombieJob: --- 10, [3051057]
[2025-10-10 15:29:50] 2025-10-10 22:28:53,816 | INFO     | zombie collector waiting for pid 3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:53,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 15:29:50] 2025-10-10 22:28:53,816 | INFO     | collected zombie processes
[2025-10-10 15:29:50] 2025-10-10 22:28:53,816 | INFO     | will attempt to kill all subprocesses of pid=3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:55,502 | INFO     | process IDs to be killed: [3051057] (in reverse order)
[2025-10-10 15:29:50] 2025-10-10 22:28:56,031 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 15:29:50] 2025-10-10 22:28:56,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 15:29:50] 2025-10-10 22:28:56,066 | INFO     | did not find any defunct processes belonging to 3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:56,095 | INFO     | did not find any defunct processes belonging to 3051057
[2025-10-10 15:29:50] 2025-10-10 22:28:56,095 | INFO     | ready for new job
[2025-10-10 15:29:50] 2025-10-10 22:28:56,095 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 15:29:50] 2025-10-10 22:28:56,096 | INFO     | ***************************************
[2025-10-10 15:29:50] 2025-10-10 22:28:56,096 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 15:29:50] 2025-10-10 22:28:56,096 | INFO     | ***************************************
[2025-10-10 15:29:50] 2025-10-10 22:28:56,096 | INFO     | 
[2025-10-10 15:29:50] 2025-10-10 22:28:56,104 | INFO     | architecture information:
[2025-10-10 15:29:50] 2025-10-10 22:28:56,108 | INFO     | executing command: cat /etc/os-release
[2025-10-10 15:29:50] 2025-10-10 22:28:56,147 | INFO     | cat /etc/os-release:
[2025-10-10 15:29:50] NAME="CentOS Linux"
[2025-10-10 15:29:50] VERSION="7 (Core)"
[2025-10-10 15:29:50] ID="centos"
[2025-10-10 15:29:50] ID_LIKE="rhel fedora"
[2025-10-10 15:29:50] VERSION_ID="7"
[2025-10-10 15:29:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 15:29:50] ANSI_COLOR="0;31"
[2025-10-10 15:29:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 15:29:50] HOME_URL="https://www.centos.org/"
[2025-10-10 15:29:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 15:29:50] 
[2025-10-10 15:29:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 15:29:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 15:29:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 15:29:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 15:29:50] 
[2025-10-10 15:29:50] 2025-10-10 22:28:56,147 | INFO     | ***************************************
[2025-10-10 15:29:50] 2025-10-10 22:28:56,651 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-10-10 15:29:50] 2025-10-10 22:28:56,712 | INFO     | sufficient remaining disk space (1769280110592 B)
[2025-10-10 15:29:50] 2025-10-10 22:28:56,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 15:29:50] 2025-10-10 22:28:56,712 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 15:29:50] 2025-10-10 22:28:56,712 | INFO     | update_server=False
[2025-10-10 15:29:50] 2025-10-10 22:28:56,712 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 15:29:50] 2025-10-10 22:28:56,714 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 15:29:50] 2025-10-10 22:28:56,898 | INFO     | all data control threads have been joined
[2025-10-10 15:29:50] 2025-10-10 22:28:57,046 | INFO     | all job control threads have been joined
[2025-10-10 15:29:50] 2025-10-10 22:28:57,691 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:29:50] 2025-10-10 22:28:57,691 | INFO     | aborting loop
[2025-10-10 15:29:50] 2025-10-10 22:28:57,718 | INFO     | [job] retrieve thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:57,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 15:29:50] 2025-10-10 22:28:57,736 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:57,904 | INFO     | [data] control thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:57,949 | INFO     | all payload control threads have been joined
[2025-10-10 15:29:50] 2025-10-10 22:28:58,036 | INFO     | [payload] failed_post thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,052 | INFO     | [job] control thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,580 | INFO     | [job] validate thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,696 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,697 | INFO     | [job] job monitor thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,700 | INFO     | [data] copytool_in thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,721 | INFO     | [data] copytool_out thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,726 | INFO     | [job] queue monitor thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,794 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,894 | INFO     | [payload] validate_post thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:58,955 | INFO     | [payload] control thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:28:59,034 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:29:00,156 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 15:29:50] 2025-10-10 22:29:04,165 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 15:29:50] 2025-10-10 22:29:25,681 | INFO     | PID=3044019 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 15:29:50] 2025-10-10 22:29:25,681 | INFO     | .. there are 42 such processes running
[2025-10-10 15:29:50] 2025-10-10 22:29:25,681 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 15:29:50] 2025-10-10 22:29:25,681 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 15:29:50] 2025-10-10 22:29:25,681 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 15:29:50] 2025-10-10 22:29:43,948 | INFO     | [monitor] cgroup control has ended
[2025-10-10 15:29:50] 2025-10-10 22:29:44,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140448867854144)>', '<ExcThread(monitor, started 140448098146048)>']
[2025-10-10 15:29:50] 2025-10-10 22:29:44,805 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 15:29:50] 2025-10-10 22:29:44,805 | INFO     | [monitor] control thread has ended
[2025-10-10 15:29:50] 2025-10-10 22:29:49,154 | INFO     | all workflow threads have been joined
[2025-10-10 15:29:50] 2025-10-10 22:29:49,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 15:29:50] 2025-10-10 22:29:49,155 | INFO     | traces error code: 0
[2025-10-10 15:29:50] 2025-10-10 22:29:49,155 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 15:29:50] 2025-10-10 22:29:49,599 [wrapper] ==== pilot stdout END ====
[2025-10-10 15:29:50] 2025-10-10 22:29:49,611 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 15:29:50] 2025-10-10 22:29:49,618 [wrapper] pilotpid: 3044019
[2025-10-10 15:29:50] 2025-10-10 22:29:49,625 [wrapper] Pilot exit status: 0
[2025-10-10 15:29:50] 2025-10-10 22:29:49,642 [wrapper] pandaids: 6837731603
[2025-10-10 15:29:50] 2025-10-10 22:29:49,847 [wrapper] cleanup supervisor_pilot 3044025 3044020
[2025-10-10 15:29:50] 2025-10-10 22:29:49,850 [wrapper] Test setup, not cleaning
[2025-10-10 15:29:50] 2025-10-10 22:29:49,852 [wrapper] apfmon messages muted
[2025-10-10 15:29:50] 2025-10-10 22:29:49,854 [wrapper] ==== wrapper stdout END ====
[2025-10-10 15:29:50] 2025-10-10 22:29:49,856 [wrapper] ==== wrapper stderr END ====
[2025-10-10 15:29:50]  *** Error codes and diagnostics ***
[2025-10-10 15:29:50]     "exeErrorCode": 65,
[2025-10-10 15:29:50]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 15:29:50]     "pilotErrorCode": 1305,
[2025-10-10 15:29:50]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2025-10-10 15:29:50]  *** Listing of results directory ***
[2025-10-10 15:29:50] total 219592
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc    557409 Oct 10 12:36 pilot3.tar.gz
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc      5112 Oct 10 12:45 queuedata.json
[2025-10-10 15:29:50] -rwx------. 1 boinc boinc     36292 Oct 10 12:47 runpilot2-wrapper.sh
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc       100 Oct 10 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 15:29:50] -rwxr-xr-x. 1 boinc boinc      7986 Oct 10 15:23 run_atlas
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc       105 Oct 10 15:23 job.xml
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc 220716595 Oct 10 15:23 EVNT.46676267._001792.pool.root.1
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc      6594 Oct 10 15:23 init_data.xml
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc     15120 Oct 10 15:23 start_atlas.sh
[2025-10-10 15:29:50] drwxrwx--x. 2 boinc boinc      4096 Oct 10 15:23 shared
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc    569683 Oct 10 15:23 input.tar.gz
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc         0 Oct 10 15:23 boinc_lockfile
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc      2550 Oct 10 15:23 pandaJob.out
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc    975517 Oct 10 15:23 agis_schedconf.cvmfs.json
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc   1560580 Oct 10 15:23 agis_ddmendpoints.agis.ALL.json
[2025-10-10 15:29:50] drwx------. 5 boinc boinc      4096 Oct 10 15:23 pilot3
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc       976 Oct 10 15:26 memory_monitor_summary.json
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc     22728 Oct 10 15:26 log.46676269._044278.job.log.tgz.1
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc        95 Oct 10 15:28 pilot_heartbeat.json
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc      8397 Oct 10 15:28 heartbeat.json
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc       525 Oct 10 15:29 boinc_task_state.xml
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc        23 Oct 10 15:29 wrapper_checkpoint.txt
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc      4823 Oct 10 15:29 pilotlog.txt
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc      8192 Oct 10 15:29 boinc_mmap_file
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc     97360 Oct 10 15:29 log.46676269._044278.job.log.1
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc       188 Oct 10 15:29 output.list
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc       620 Oct 10 15:29 runtime_log
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc    143360 Oct 10 15:29 result.tar.gz
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc      8528 Oct 10 15:29 runtime_log.err
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc       646 Oct 10 15:29 o9FODmTGYR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZJeNDmnco1Ko.diag
[2025-10-10 15:29:50] -rw-r--r--. 1 boinc boinc     21951 Oct 10 15:29 stderr.txt
[2025-10-10 15:29:50] No HITS result produced
[2025-10-10 15:29:50]  *** Contents of shared directory: ***
[2025-10-10 15:29:50] total 216264
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc 220716595 Oct 10 15:23 ATLAS.root_0
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc     15120 Oct 10 15:23 start_atlas.sh
[2025-10-10 15:29:50] -rw-r--r--. 2 boinc boinc    569683 Oct 10 15:23 input.tar.gz
[2025-10-10 15:29:50] -rw-------. 1 boinc boinc    143360 Oct 10 15:29 result.tar.gz
15:29:51 (3040199): run_atlas exited; CPU time 31.689355
15:29:51 (3040199): called boinc_finish(0)

</stderr_txt>
]]>

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