Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:07:03 (2045607): wrapper (7.7.26015): starting
22:07:03 (2045607): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 22:07:03] Arguments: --nthreads 9
[2025-10-10 22:07:03] Threads: 9
[2025-10-10 22:07:03] Checking for CVMFS
[2025-10-10 22:07:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 22:07:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 22:07:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 22:07:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 22:07:07] 2.13.2.0 3327531 21283 218800 151567 1 331 21428378 39288832 11697 16776704 0 24219480 99.713 19499247 33806 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 22:07:07] CVMFS is ok
[2025-10-10 22:07:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 22:07:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 22:07:07] Further information can be found at the LHC@home message board.
[2025-10-10 22:07:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 22:07:07] Checking for apptainer binary...
[2025-10-10 22:07:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 22:07:07] Running /usr/bin/apptainer --version
[2025-10-10 22:07:08] apptainer version 1.4.3-1.el9
[2025-10-10 22:07:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 22:07:08] c-210-1.aglt2.org
[2025-10-10 22:07:08] apptainer works
[2025-10-10 22:07:08] Set ATHENA_PROC_NUMBER=9
[2025-10-10 22:07:08] Set ATHENA_CORE_NUMBER=9
[2025-10-10 22:07:08] Starting ATLAS job with PandaID=6837669234
[2025-10-10 22:07:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 10:13:10]  *** The last 200 lines of the pilot log: ***
[2025-10-11 10:13:10] 2025-10-11 14:12:03,817 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.9799000000003
[2025-10-11 10:13:10] 2025-10-11 14:12:03,883 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837669234/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 10:13:10] 2025-10-11 14:12:03,885 | INFO     | extracted standard info from prmon json
[2025-10-11 10:13:10] 2025-10-11 14:12:03,885 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 10:13:10] 2025-10-11 14:12:03,885 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 10:13:10] 2025-10-11 14:12:03,886 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 10:13:10] 2025-10-11 14:12:03,909 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 10:13:10] 2025-10-11 14:12:04,237 | INFO     | fitting pss+swap vs Time
[2025-10-11 10:13:10] 2025-10-11 14:12:04,238 | INFO     | sum of square deviations: 109576830039.72148
[2025-10-11 10:13:10] 2025-10-11 14:12:04,407 | INFO     | sum of deviations: 529125420976.36676
[2025-10-11 10:13:10] 2025-10-11 14:12:04,407 | INFO     | mean x: 1760170290.019802
[2025-10-11 10:13:10] 2025-10-11 14:12:04,407 | INFO     | mean y: 2517221.9024045262
[2025-10-11 10:13:10] 2025-10-11 14:12:04,407 | INFO     | -- intersect: -8497006312.034538
[2025-10-11 10:13:10] 2025-10-11 14:12:04,407 | INFO     | intersect: -8497006312.034538
[2025-10-11 10:13:10] 2025-10-11 14:12:04,409 | INFO     | chi2: 5.747239723242422
[2025-10-11 10:13:10] 2025-10-11 14:12:04,454 | INFO     | sum of square deviations: 107268661606.81062
[2025-10-11 10:13:10] 2025-10-11 14:12:04,748 | INFO     | sum of deviations: 616662997488.6647
[2025-10-11 10:13:10] 2025-10-11 14:12:04,800 | INFO     | mean x: 1760170137.531339
[2025-10-11 10:13:10] 2025-10-11 14:12:04,800 | INFO     | mean y: 2522979.378917379
[2025-10-11 10:13:10] 2025-10-11 14:12:04,800 | INFO     | -- intersect: -10116292496.09258
[2025-10-11 10:13:10] 2025-10-11 14:12:04,800 | INFO     | intersect: -10116292496.09258
[2025-10-11 10:13:10] 2025-10-11 14:12:04,802 | INFO     | chi2: 4.357601645525397
[2025-10-11 10:13:10] 2025-10-11 14:12:04,802 | INFO     | current chi2=4.357601645525397 (change=24.179225935142163 %)
[2025-10-11 10:13:10] 2025-10-11 14:12:04,802 | INFO     | right removable region: 701
[2025-10-11 10:13:10] 2025-10-11 14:12:04,803 | INFO     | sum of square deviations: 107267919784.74664
[2025-10-11 10:13:10] 2025-10-11 14:12:05,008 | INFO     | sum of deviations: 327282253285.67535
[2025-10-11 10:13:10] 2025-10-11 14:12:05,008 | INFO     | mean x: 1760170442.5327635
[2025-10-11 10:13:10] 2025-10-11 14:12:05,008 | INFO     | mean y: 2530544.188034188
[2025-10-11 10:13:10] 2025-10-11 14:12:05,008 | INFO     | -- intersect: -5367877959.630868
[2025-10-11 10:13:10] 2025-10-11 14:12:05,009 | INFO     | intersect: -5367877959.630868
[2025-10-11 10:13:10] 2025-10-11 14:12:05,010 | INFO     | chi2: 2.8494812790942445
[2025-10-11 10:13:10] 2025-10-11 14:12:05,010 | INFO     | current chi2=2.8494812790942445 (change=50.420003056934405 %)
[2025-10-11 10:13:10] 2025-10-11 14:12:05,036 | INFO     | sum of square deviations: 104991746952.70876
[2025-10-11 10:13:10] 2025-10-11 14:12:05,142 | INFO     | sum of deviations: 240298214198.99304
[2025-10-11 10:13:10] 2025-10-11 14:12:05,143 | INFO     | mean x: 1760170595.0430417
[2025-10-11 10:13:10] 2025-10-11 14:12:05,143 | INFO     | mean y: 2536366.8335724534
[2025-10-11 10:13:10] 2025-10-11 14:12:05,143 | INFO     | -- intersect: -4026026476.919638
[2025-10-11 10:13:10] 2025-10-11 14:12:05,143 | INFO     | intersect: -4026026476.919638
[2025-10-11 10:13:10] 2025-10-11 14:12:05,144 | INFO     | chi2: 2.3077704088934023
[2025-10-11 10:13:10] 2025-10-11 14:12:05,213 | INFO     | current chi2=2.3077704088934023 (change=19.010859070217652 %)
[2025-10-11 10:13:10] 2025-10-11 14:12:05,213 | INFO     | left removable region: 20
[2025-10-11 10:13:10] 2025-10-11 14:12:05,214 | INFO     | sum of square deviations: 97925676376.61674
[2025-10-11 10:13:10] 2025-10-11 14:12:05,414 | INFO     | monitor loop #1572: job 0:6837669234 is in state 'finished'
[2025-10-11 10:13:10] 2025-10-11 14:12:05,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 10:13:10] 2025-10-11 14:12:05,446 | INFO     | sum of deviations: 185883691789.21173
[2025-10-11 10:13:10] 2025-10-11 14:12:05,447 | INFO     | mean x: 1760170717.0704846
[2025-10-11 10:13:10] 2025-10-11 14:12:05,447 | INFO     | mean y: 2552165.6622613803
[2025-10-11 10:13:10] 2025-10-11 14:12:05,447 | INFO     | -- intersect: -3338624971.6799664
[2025-10-11 10:13:10] 2025-10-11 14:12:05,447 | INFO     | intersect: -3338624971.6799664
[2025-10-11 10:13:10] 2025-10-11 14:12:05,448 | INFO     | chi2: 0.2391471096874529
[2025-10-11 10:13:10] 2025-10-11 14:12:05,449 | INFO     | -- intersect: -3338624971.6799664
[2025-10-11 10:13:10] 2025-10-11 14:12:05,449 | INFO     | current memory leak: 1.90 B/s (using 681 data points, chi2=0.24)
[2025-10-11 10:13:10] 2025-10-11 14:12:05,470 | INFO     | could have reported an average CPU frequency of 2599 MHz (20 samples)
[2025-10-11 10:13:10] 2025-10-11 14:12:05,471 | INFO     | ..............................
[2025-10-11 10:13:10] 2025-10-11 14:12:05,471 | INFO     | . Timing measurements:
[2025-10-11 10:13:10] 2025-10-11 14:12:05,471 | INFO     | . get job = 2 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,471 | INFO     | . initial setup = 16 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,471 | INFO     | . payload setup = 68 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,472 | INFO     | . stage-in = 0 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,472 | INFO     | . payload execution = 43126 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,472 | INFO     | . stage-out = 13 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,472 | INFO     | . log creation = 3 s
[2025-10-11 10:13:10] 2025-10-11 14:12:05,472 | INFO     | ..............................
[2025-10-11 10:13:10] 2025-10-11 14:12:07,463 | INFO     | 
[2025-10-11 10:13:10] 2025-10-11 14:12:07,511 | INFO     | job summary report
[2025-10-11 10:13:10] 2025-10-11 14:12:07,511 | INFO     | --------------------------------------------------
[2025-10-11 10:13:10] 2025-10-11 14:12:07,511 | INFO     | PanDA job id: 6837669234
[2025-10-11 10:13:10] 2025-10-11 14:12:07,511 | INFO     | task id: 46676269
[2025-10-11 10:13:10] 2025-10-11 14:12:07,511 | INFO     | errors: (none)
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | pilot state: finished 
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | transexitcode: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | exeerrorcode: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | exeerrordiag: 
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | exitcode: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | exitmsg: OK
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | cpuconsumptiontime: 55936 s
[2025-10-11 10:13:10] 2025-10-11 14:12:07,512 | INFO     | nevents: 400
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | neventsw: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | pid: 2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | pgrp: 2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | corecount: 9
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | event service: False
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348913, 14: 2348913, 26: 2348941, 38: 2348969, 49: 2349125, 54: 2349415, 61: 2349443, 43198: 2386407, 43200: 2386406, 43215: 23
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | --------------------------------------------------
[2025-10-11 10:13:10] 2025-10-11 14:12:07,513 | INFO     | 
[2025-10-11 10:13:10] 2025-10-11 14:12:07,514 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 10:13:10] 2025-10-11 14:12:07,788 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,789 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,789 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,789 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,789 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,789 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,790 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | job 6837669234 has completed (purged errors)
[2025-10-11 10:13:10] 2025-10-11 14:12:07,791 | INFO     | overall cleanup function is called
[2025-10-11 10:13:10] 2025-10-11 14:12:08,903 | INFO     | --- collectZombieJob: --- 10, [2065368]
[2025-10-11 10:13:10] 2025-10-11 14:12:08,903 | INFO     | zombie collector waiting for pid 2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:08,903 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 10:13:10] 2025-10-11 14:12:08,904 | INFO     | collected zombie processes
[2025-10-11 10:13:10] 2025-10-11 14:12:08,904 | INFO     | will attempt to kill all subprocesses of pid=2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:08,966 | INFO     | PID=2052102 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 10:13:10] 2025-10-11 14:12:08,966 | INFO     | .. there are 14 such processes running
[2025-10-11 10:13:10] 2025-10-11 14:12:10,780 | INFO     | process IDs to be killed: [2065368] (in reverse order)
[2025-10-11 10:13:10] 2025-10-11 14:12:11,147 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 10:13:10] 2025-10-11 14:12:11,147 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 10:13:10] 2025-10-11 14:12:11,249 | INFO     | did not find any defunct processes belonging to 2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:11,316 | INFO     | did not find any defunct processes belonging to 2065368
[2025-10-11 10:13:10] 2025-10-11 14:12:11,316 | INFO     | ready for new job
[2025-10-11 10:13:10] 2025-10-11 14:12:11,316 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 10:13:10] 2025-10-11 14:12:11,324 | INFO     | ***************************************
[2025-10-11 10:13:10] 2025-10-11 14:12:11,324 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 10:13:10] 2025-10-11 14:12:11,324 | INFO     | ***************************************
[2025-10-11 10:13:10] 2025-10-11 14:12:11,325 | INFO     | 
[2025-10-11 10:13:10] 2025-10-11 14:12:11,331 | INFO     | architecture information:
[2025-10-11 10:13:10] 2025-10-11 14:12:11,335 | INFO     | executing command: cat /etc/os-release
[2025-10-11 10:13:10] 2025-10-11 14:12:11,618 | INFO     | cat /etc/os-release:
[2025-10-11 10:13:10] NAME="CentOS Linux"
[2025-10-11 10:13:10] VERSION="7 (Core)"
[2025-10-11 10:13:10] ID="centos"
[2025-10-11 10:13:10] ID_LIKE="rhel fedora"
[2025-10-11 10:13:10] VERSION_ID="7"
[2025-10-11 10:13:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 10:13:10] ANSI_COLOR="0;31"
[2025-10-11 10:13:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 10:13:10] HOME_URL="https://www.centos.org/"
[2025-10-11 10:13:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 10:13:10] 
[2025-10-11 10:13:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 10:13:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 10:13:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 10:13:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 10:13:10] 
[2025-10-11 10:13:10] 2025-10-11 14:12:11,619 | INFO     | ***************************************
[2025-10-11 10:13:10] 2025-10-11 14:12:12,121 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 10:13:10] 2025-10-11 14:12:12,548 | INFO     | sufficient remaining disk space (52946796544 B)
[2025-10-11 10:13:10] 2025-10-11 14:12:12,548 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 10:13:10] 2025-10-11 14:12:12,548 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 10:13:10] 2025-10-11 14:12:12,548 | INFO     | update_server=False
[2025-10-11 10:13:10] 2025-10-11 14:12:12,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 10:13:10] 2025-10-11 14:12:12,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 10:13:10] 2025-10-11 14:12:12,549 | INFO     | aborting loop
[2025-10-11 10:13:10] 2025-10-11 14:12:12,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 10:13:10] 2025-10-11 14:12:12,579 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 10:13:10] 2025-10-11 14:12:12,619 | INFO     | all job control threads have been joined
[2025-10-11 10:13:10] 2025-10-11 14:12:12,982 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 10:13:10] 2025-10-11 14:12:13,554 | INFO     | [job] retrieve thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:13,558 | INFO     | [job] job monitor thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:13,585 | INFO     | [job] queue monitor thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:13,591 | INFO     | all data control threads have been joined
[2025-10-11 10:13:10] 2025-10-11 14:12:13,625 | INFO     | [job] control thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:13,628 | INFO     | all payload control threads have been joined
[2025-10-11 10:13:10] 2025-10-11 14:12:13,662 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:13,967 | INFO     | [job] validate thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,096 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,097 | INFO     | [data] copytool_in thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,108 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,121 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,616 | INFO     | [data] control thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,634 | INFO     | [payload] control thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,967 | INFO     | [payload] failed_post thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:14,989 | INFO     | [data] copytool_out thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:15,088 | INFO     | [payload] validate_post thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:15,095 | INFO     | [monitor] cgroup control has ended
[2025-10-11 10:13:10] 2025-10-11 14:12:16,605 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 10:13:10] 2025-10-11 14:12:18,623 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140238878607168)>', '<ExcThread(monitor, started 140238223550208)>']
[2025-10-11 10:13:10] 2025-10-11 14:12:23,653 | INFO     | all workflow threads have been joined
[2025-10-11 10:13:10] 2025-10-11 14:12:23,657 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 10:13:10] 2025-10-11 14:12:23,657 | INFO     | traces error code: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:23,658 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 10:13:10] 2025-10-11 14:12:46,109 | INFO     | PID=2052102 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 10:13:10] 2025-10-11 14:12:46,110 | INFO     | .. there are 14 such processes running
[2025-10-11 10:13:10] 2025-10-11 14:12:46,115 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 10:13:10] 2025-10-11 14:12:46,115 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 10:13:10] 2025-10-11 14:12:46,115 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 10:13:10] 2025-10-11 14:12:46,116 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 10:13:10] 2025-10-11 14:12:46,116 | INFO     | [monitor] control thread has ended
[2025-10-11 10:13:10] 2025-10-11 14:12:49,884 [wrapper] ==== pilot stdout END ====
[2025-10-11 10:13:10] 2025-10-11 14:12:50,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 10:13:10] 2025-10-11 14:12:50,054 [wrapper] pilotpid: 2052102
[2025-10-11 10:13:10] 2025-10-11 14:12:50,090 [wrapper] Pilot exit status: 0
[2025-10-11 10:13:10] 2025-10-11 14:12:50,326 [wrapper] pandaids: 6837669234
[2025-10-11 10:13:10] 2025-10-11 14:12:50,958 [wrapper] cleanup supervisor_pilot 3638854 2052103
[2025-10-11 10:13:10] 2025-10-11 14:12:51,018 [wrapper] Test setup, not cleaning
[2025-10-11 10:13:10] 2025-10-11 14:12:51,057 [wrapper] apfmon messages muted
[2025-10-11 10:13:10] 2025-10-11 14:12:51,084 [wrapper] ==== wrapper stdout END ====
[2025-10-11 10:13:10] 2025-10-11 14:12:51,151 [wrapper] ==== wrapper stderr END ====
[2025-10-11 10:13:10]  *** Error codes and diagnostics ***
[2025-10-11 10:13:10]     "exeErrorCode": 0,
[2025-10-11 10:13:10]     "exeErrorDiag": "",
[2025-10-11 10:13:10]     "pilotErrorCode": 0,
[2025-10-11 10:13:10]     "pilotErrorDiag": "",
[2025-10-11 10:13:10]  *** Listing of results directory ***
[2025-10-11 10:13:10] total 418520
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 12:15 pilot3.tar.gz
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 12:36 queuedata.json
[2025-10-11 10:13:10] -rwx------. 1 boincer umatlas     36292 Oct 10 12:36 runpilot2-wrapper.sh
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas       100 Oct 10 22:07 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 10:13:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 22:07 run_atlas
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas       105 Oct 10 22:07 job.xml
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas 221122378 Oct 10 22:07 EVNT.46676267._001687.pool.root.1
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 22:07 start_atlas.sh
[2025-10-11 10:13:10] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 22:07 shared
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 22:07 input.tar.gz
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas         0 Oct 10 22:07 boinc_lockfile
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 22:07 pandaJob.out
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas    975517 Oct 10 22:08 agis_schedconf.cvmfs.json
[2025-10-11 10:13:10] drwx------. 5 boincer umatlas      4096 Oct 10 22:08 pilot3
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas 193644945 Oct 11 10:08 HITS.46676269._041634.pool.root.1
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas       531 Oct 11 10:09 boinc_task_state.xml
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas      6660 Oct 11 10:09 init_data.xml
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas      1067 Oct 11 10:10 memory_monitor_summary.json
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas   1560580 Oct 11 10:10 agis_ddmendpoints.agis.ALL.json
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas    756517 Oct 11 10:10 log.46676269._041634.job.log.tgz.1
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas      7850 Oct 11 10:12 heartbeat.json
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas        95 Oct 11 10:12 pilot_heartbeat.json
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas       823 Oct 11 10:12 pilotlog.txt
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas   4194650 Oct 11 10:12 log.46676269._041634.job.log.1
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas       357 Oct 11 10:12 output.list
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas       620 Oct 11 10:12 runtime_log
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas   4966400 Oct 11 10:12 result.tar.gz
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas       662 Oct 11 10:12 WKkLDm1HVR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmGFQMDmOQBZhm.diag
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas      8699 Oct 11 10:12 runtime_log.err
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 10:13 boinc_mmap_file
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas        28 Oct 11 10:13 wrapper_checkpoint.txt
[2025-10-11 10:13:10] -rw-r--r--. 1 boincer umatlas     21365 Oct 11 10:13 stderr.txt
[2025-10-11 10:13:10] HITS file was successfully produced:
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas 193644945 Oct 11 10:08 shared/HITS.pool.root.1
[2025-10-11 10:13:10]  *** Contents of shared directory: ***
[2025-10-11 10:13:10] total 410480
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas 221122378 Oct 10 22:07 ATLAS.root_0
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 22:07 start_atlas.sh
[2025-10-11 10:13:10] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 22:07 input.tar.gz
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas 193644945 Oct 11 10:08 HITS.pool.root.1
[2025-10-11 10:13:10] -rw-------. 1 boincer umatlas   4966400 Oct 11 10:12 result.tar.gz
10:13:12 (2045607): run_atlas exited; CPU time 56776.173546
10:13:12 (2045607): called boinc_finish(0)

</stderr_txt>
]]>

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