Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:24:23 (2211649): wrapper (7.7.26015): starting
18:24:23 (2211649): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 18:24:23] Arguments: --nthreads 12
[2025-10-10 18:24:23] Threads: 12
[2025-10-10 18:24:23] Checking for CVMFS
[2025-10-10 18:24:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 18:24:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 18:24:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 18:24:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 18:24:23] 2.13.2.0 135553 1909 104472 151564 3 193 24100042 32503809 7950 16776704 0 32576973 99.979 2075105 53468 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 18:24:23] CVMFS is ok
[2025-10-10 18:24:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 18:24:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 18:24:23] Further information can be found at the LHC@home message board.
[2025-10-10 18:24:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 18:24:23] Checking for apptainer binary...
[2025-10-10 18:24:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 18:24:23] Running /usr/bin/apptainer --version
[2025-10-10 18:24:23] apptainer version 1.4.3-1.el9
[2025-10-10 18:24:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 18:24:23] c8-7-2.aglt2.org
[2025-10-10 18:24:23] apptainer works
[2025-10-10 18:24:23] Set ATHENA_PROC_NUMBER=12
[2025-10-10 18:24:23] Set ATHENA_CORE_NUMBER=12
[2025-10-10 18:24:23] Starting ATLAS job with PandaID=6837630315
[2025-10-10 18:24:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 18:53:41]  *** The last 200 lines of the pilot log: ***
[2025-10-10 18:53:41]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 18:53:41]  replicas=None
[2025-10-10 18:53:41]  scope=mc23_13p6TeV
[2025-10-10 18:53:41]  status=None
[2025-10-10 18:53:41]  status_code=0
[2025-10-10 18:53:41]  storage_token=
[2025-10-10 18:53:41]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6837630315/log.46676269._038955.job.log.tgz.1
[2025-10-10 18:53:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/53/log.46676269._038955.job.log.tgz.1
[2025-10-10 18:53:41]  workdir=None
[2025-10-10 18:53:41] ]
[2025-10-10 18:53:41] 2025-10-10 22:52:44,842 | INFO     | transferring file log.46676269._038955.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6837630315/log.46676269._038955.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 18:53:41] 2025-10-10 22:52:44,842 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6837630315/log.46676269._038955.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._038955.job
[2025-10-10 18:53:41] 2025-10-10 22:52:44,856 | INFO     | adding to output.list: log.46676269._038955.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/48/53/log.46676269._038955.job.log.tg
[2025-10-10 18:53:41] 2025-10-10 22:52:44,857 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 18:53:41] 2025-10-10 22:52:44,857 | INFO     | summary of transferred files:
[2025-10-10 18:53:41] 2025-10-10 22:52:44,857 | INFO     |  -- lfn=log.46676269._038955.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 18:53:41] 2025-10-10 22:52:44,857 | INFO     | stage-out finished correctly
[2025-10-10 18:53:41] 2025-10-10 22:52:44,873 | INFO     | time since job start (1690s) is within the limit (172800.0s)
[2025-10-10 18:53:41] 2025-10-10 22:52:44,909 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 18:53:41] 2025-10-10 22:52:46,364 | INFO     | PID=2215432 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 18:53:41] 2025-10-10 22:52:46,364 | INFO     | .. there are 11 such processes running
[2025-10-10 18:53:41] 2025-10-10 22:52:46,630 | INFO     | job 6837630315 has state=finished
[2025-10-10 18:53:41] 2025-10-10 22:52:46,630 | INFO     | preparing for final server update for job 6837630315 in state='finished'
[2025-10-10 18:53:41] 2025-10-10 22:52:46,631 | INFO     | this job has now completed (state=finished)
[2025-10-10 18:53:41] 2025-10-10 22:52:46,631 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 18:53:41] 2025-10-10 22:52:46,631 | INFO     | log transfer has been attempted: DONE
[2025-10-10 18:53:41] 2025-10-10 22:52:46,631 | INFO     | job 6837630315 has finished - writing final server update
[2025-10-10 18:53:41] 2025-10-10 22:52:46,631 | INFO     | total number of processed events: 400 (read)
[2025-10-10 18:53:41] 2025-10-10 22:52:46,632 | INFO     | executing command: lscpu
[2025-10-10 18:53:41] 2025-10-10 22:52:46,694 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 18:53:41] 2025-10-10 22:52:47,364 | INFO     | time since job start (1693s) is within the limit (172800.0s)
[2025-10-10 18:53:41] 2025-10-10 22:52:49,181 | WARNING  | process 2222762 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 18:53:41] 2025-10-10 22:52:49,181 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6837630315/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 18:53:41] 2025-10-10 22:52:49,370 | INFO     | time since job start (1695s) is within the limit (172800.0s)
[2025-10-10 18:53:41] 2025-10-10 22:52:49,550 | INFO     | number of running child processes to parent process 2222762: 1
[2025-10-10 18:53:41] 2025-10-10 22:52:49,550 | INFO     | maximum number of monitored processes: 6
[2025-10-10 18:53:41] 2025-10-10 22:52:50,064 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 18:53:41] 2025-10-10 22:52:50,068 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3593.888742187497
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6837630315/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | INFO     | extracted standard info from prmon json
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 18:53:41] 2025-10-10 22:52:50,076 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | fitting pss+swap vs Time
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | sum of square deviations: 2865170.0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | sum of deviations: -124273470.0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | mean x: 1760136013.0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | mean y: 2444313.8571428573
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | -- intersect: 76346329670.56377
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | intersect: 76346329670.56377
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | chi2: 0.0012998325661384231
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | -- intersect: 76346329670.56377
[2025-10-10 18:53:41] 2025-10-10 22:52:50,077 | INFO     | current memory leak: -43.37 B/s (using 21 data points, chi2=0.00)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | could have reported an average CPU frequency of 3580 MHz (4 samples)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | ..............................
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . Timing measurements:
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . get job = 0 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . initial setup = 3 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . payload setup = 4 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . stage-in = 0 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . payload execution = 1666 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . stage-out = 0 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | . log creation = 0 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,078 | INFO     | ..............................
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | 
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | job summary report
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | --------------------------------------------------
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | PanDA job id: 6837630315
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | task id: 46676269
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | errors: (none)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | pilot state: finished 
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | transexitcode: 0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | exeerrorcode: 0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | exeerrordiag: 
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | exitcode: 0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,610 | INFO     | exitmsg: OK
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | cpuconsumptiontime: 17804 s
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | nevents: 400
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | neventsw: 0
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | pid: 2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | pgrp: 2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | corecount: 12
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | event service: False
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | sizes: {0: 2348686, 1: 2348885, 4: 2349147, 11: 2349175, 1674: 2374043, 1676: 2383225, 1681: 2383363}
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | --------------------------------------------------
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | 
[2025-10-10 18:53:41] 2025-10-10 22:52:50,611 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-10 18:53:41] 2025-10-10 22:52:50,626 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 18:53:41] 2025-10-10 22:52:50,627 | INFO     | job 6837630315 has completed (purged errors)
[2025-10-10 18:53:41] 2025-10-10 22:52:50,628 | INFO     | overall cleanup function is called
[2025-10-10 18:53:41] 2025-10-10 22:52:51,635 | INFO     | --- collectZombieJob: --- 10, [2222762]
[2025-10-10 18:53:41] 2025-10-10 22:52:51,635 | INFO     | zombie collector waiting for pid 2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:51,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 18:53:41] 2025-10-10 22:52:51,635 | INFO     | collected zombie processes
[2025-10-10 18:53:41] 2025-10-10 22:52:51,636 | INFO     | will attempt to kill all subprocesses of pid=2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:52,004 | INFO     | process IDs to be killed: [2222762] (in reverse order)
[2025-10-10 18:53:41] 2025-10-10 22:52:52,129 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 18:53:41] 2025-10-10 22:52:52,129 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 18:53:41] 2025-10-10 22:52:52,147 | INFO     | did not find any defunct processes belonging to 2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:52,160 | INFO     | did not find any defunct processes belonging to 2222762
[2025-10-10 18:53:41] 2025-10-10 22:52:52,161 | INFO     | ready for new job
[2025-10-10 18:53:41] 2025-10-10 22:52:52,161 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 18:53:41] 2025-10-10 22:52:52,162 | INFO     | ***************************************
[2025-10-10 18:53:41] 2025-10-10 22:52:52,162 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 18:53:41] 2025-10-10 22:52:52,162 | INFO     | ***************************************
[2025-10-10 18:53:41] 2025-10-10 22:52:52,162 | INFO     | 
[2025-10-10 18:53:41] 2025-10-10 22:52:52,178 | INFO     | architecture information:
[2025-10-10 18:53:41] 2025-10-10 22:52:52,178 | INFO     | executing command: cat /etc/os-release
[2025-10-10 18:53:41] 2025-10-10 22:52:52,190 | INFO     | cat /etc/os-release:
[2025-10-10 18:53:41] NAME="CentOS Linux"
[2025-10-10 18:53:41] VERSION="7 (Core)"
[2025-10-10 18:53:41] ID="centos"
[2025-10-10 18:53:41] ID_LIKE="rhel fedora"
[2025-10-10 18:53:41] VERSION_ID="7"
[2025-10-10 18:53:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 18:53:41] ANSI_COLOR="0;31"
[2025-10-10 18:53:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 18:53:41] HOME_URL="https://www.centos.org/"
[2025-10-10 18:53:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 18:53:41] 
[2025-10-10 18:53:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 18:53:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 18:53:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 18:53:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 18:53:41] 
[2025-10-10 18:53:41] 2025-10-10 22:52:52,190 | INFO     | ***************************************
[2025-10-10 18:53:41] 2025-10-10 22:52:52,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-10 18:53:41] 2025-10-10 22:52:52,706 | INFO     | sufficient remaining disk space (91128594432 B)
[2025-10-10 18:53:41] 2025-10-10 22:52:52,706 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 18:53:41] 2025-10-10 22:52:52,707 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 18:53:41] 2025-10-10 22:52:52,707 | INFO     | update_server=False
[2025-10-10 18:53:41] 2025-10-10 22:52:52,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 18:53:41] 2025-10-10 22:52:52,920 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 18:53:41] 2025-10-10 22:52:53,058 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 18:53:41] 2025-10-10 22:52:53,058 | INFO     | aborting loop
[2025-10-10 18:53:41] 2025-10-10 22:52:53,297 | INFO     | all data control threads have been joined
[2025-10-10 18:53:41] 2025-10-10 22:52:53,517 | INFO     | all payload control threads have been joined
[2025-10-10 18:53:41] 2025-10-10 22:52:53,614 | INFO     | all job control threads have been joined
[2025-10-10 18:53:41] 2025-10-10 22:52:53,712 | INFO     | [job] retrieve thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:53,752 | INFO     | [payload] validate_post thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:53,850 | INFO     | [payload] failed_post thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,064 | INFO     | [job] job monitor thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,195 | INFO     | [data] copytool_in thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,302 | INFO     | [data] control thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,522 | INFO     | [payload] control thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,600 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,620 | INFO     | [job] control thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,633 | INFO     | [job] validate thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,784 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,850 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,869 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:54,926 | INFO     | [data] copytool_out thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:55,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 18:53:41] 2025-10-10 22:52:55,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 18:53:41] 2025-10-10 22:52:56,124 | INFO     | [job] queue monitor thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:52:59,479 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 18:53:41] 2025-10-10 22:53:22,829 | INFO     | PID=2215432 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 18:53:41] 2025-10-10 22:53:22,829 | INFO     | .. there are 11 such processes running
[2025-10-10 18:53:41] 2025-10-10 22:53:22,830 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 18:53:41] 2025-10-10 22:53:22,830 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 18:53:41] 2025-10-10 22:53:22,830 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 18:53:41] 2025-10-10 22:53:35,901 | INFO     | [monitor] cgroup control has ended
[2025-10-10 18:53:41] 2025-10-10 22:53:36,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470893422400)>', '<ExcThread(monitor, started 140470076282624)>']
[2025-10-10 18:53:41] 2025-10-10 22:53:36,898 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 18:53:41] 2025-10-10 22:53:36,898 | INFO     | [monitor] control thread has ended
[2025-10-10 18:53:41] 2025-10-10 22:53:41,458 | INFO     | all workflow threads have been joined
[2025-10-10 18:53:41] 2025-10-10 22:53:41,458 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 18:53:41] 2025-10-10 22:53:41,458 | INFO     | traces error code: 0
[2025-10-10 18:53:41] 2025-10-10 22:53:41,458 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 18:53:41] 2025-10-10 22:53:41,542 [wrapper] ==== pilot stdout END ====
[2025-10-10 18:53:41] 2025-10-10 22:53:41,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 18:53:41] 2025-10-10 22:53:41,546 [wrapper] pilotpid: 2215432
[2025-10-10 18:53:41] 2025-10-10 22:53:41,548 [wrapper] Pilot exit status: 0
[2025-10-10 18:53:41] 2025-10-10 22:53:41,557 [wrapper] pandaids: 6837630315
[2025-10-10 18:53:41] 2025-10-10 22:53:41,654 [wrapper] cleanup supervisor_pilot 2377666 2215433
[2025-10-10 18:53:41] 2025-10-10 22:53:41,657 [wrapper] Test setup, not cleaning
[2025-10-10 18:53:41] 2025-10-10 22:53:41,659 [wrapper] apfmon messages muted
[2025-10-10 18:53:41] 2025-10-10 22:53:41,661 [wrapper] ==== wrapper stdout END ====
[2025-10-10 18:53:41] 2025-10-10 22:53:41,664 [wrapper] ==== wrapper stderr END ====
[2025-10-10 18:53:41]  *** Error codes and diagnostics ***
[2025-10-10 18:53:41]     "exeErrorCode": 0,
[2025-10-10 18:53:41]     "exeErrorDiag": "",
[2025-10-10 18:53:41]     "pilotErrorCode": 0,
[2025-10-10 18:53:41]     "pilotErrorDiag": "",
[2025-10-10 18:53:41]  *** Listing of results directory ***
[2025-10-10 18:53:41] total 410144
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 09:04 pilot3.tar.gz
[2025-10-10 18:53:41] -rwx------. 1 boincer umatlas     36292 Oct 10 09:10 runpilot2-wrapper.sh
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 09:10 queuedata.json
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas       100 Oct 10 18:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 18:53:41] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 18:24 run_atlas
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas       105 Oct 10 18:24 job.xml
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas 220663547 Oct 10 18:24 EVNT.46676267._001581.pool.root.1
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 18:24 start_atlas.sh
[2025-10-10 18:53:41] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 18:24 shared
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas    569680 Oct 10 18:24 input.tar.gz
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas         0 Oct 10 18:24 boinc_lockfile
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 18:24 pandaJob.out
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas    975517 Oct 10 18:24 agis_schedconf.cvmfs.json
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas   1560580 Oct 10 18:24 agis_ddmendpoints.agis.ALL.json
[2025-10-10 18:53:41] drwx------. 5 boincer umatlas      4096 Oct 10 18:24 pilot3
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas      7161 Oct 10 18:47 init_data.xml
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas 194188829 Oct 10 18:52 HITS.46676269._038955.pool.root.1
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas       529 Oct 10 18:52 boinc_task_state.xml
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas      1030 Oct 10 18:52 memory_monitor_summary.json
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas    339055 Oct 10 18:52 log.46676269._038955.job.log.tgz.1
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas      7772 Oct 10 18:52 heartbeat.json
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas        95 Oct 10 18:53 pilot_heartbeat.json
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 18:53 boinc_mmap_file
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas        27 Oct 10 18:53 wrapper_checkpoint.txt
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas      4824 Oct 10 18:53 pilotlog.txt
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas    280693 Oct 10 18:53 log.46676269._038955.job.log.1
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas       357 Oct 10 18:53 output.list
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas       620 Oct 10 18:53 runtime_log
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas    634880 Oct 10 18:53 result.tar.gz
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas      8695 Oct 10 18:53 runtime_log.err
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas       647 Oct 10 18:53 8ttLDmN4RR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmOQdNDm8eeqWn.diag
[2025-10-10 18:53:41] -rw-r--r--. 1 boincer umatlas     21947 Oct 10 18:53 stderr.txt
[2025-10-10 18:53:41] HITS file was successfully produced:
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas 194188829 Oct 10 18:52 shared/HITS.pool.root.1
[2025-10-10 18:53:41]  *** Contents of shared directory: ***
[2025-10-10 18:53:41] total 406332
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas 220663547 Oct 10 18:24 ATLAS.root_0
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 18:24 start_atlas.sh
[2025-10-10 18:53:41] -rw-r--r--. 2 boincer umatlas    569680 Oct 10 18:24 input.tar.gz
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas 194188829 Oct 10 18:52 HITS.pool.root.1
[2025-10-10 18:53:41] -rw-------. 1 boincer umatlas    634880 Oct 10 18:53 result.tar.gz
18:53:42 (2211649): run_atlas exited; CPU time 17838.411585
18:53:42 (2211649): called boinc_finish(0)

</stderr_txt>
]]>

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