Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:58:13 (2465407): wrapper (7.7.26015): starting
09:58:13 (2465407): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 09:58:13] Arguments: --nthreads 3
[2025-10-11 09:58:13] Threads: 3
[2025-10-11 09:58:13] Checking for CVMFS
[2025-10-11 09:58:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 09:58:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 09:58:13] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 09:58:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 09:58:14] 2.9.2.0 1718076 2653 65956 151576 1 57 28878783 36864001 0 130560 0 1954757 99.991 85420 914 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 09:58:14] CVMFS is ok
[2025-10-11 09:58:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:58:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:58:14] Further information can be found at the LHC@home message board.
[2025-10-11 09:58:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:58:14] Checking for apptainer binary...
[2025-10-11 09:58:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 09:58:14] Running /usr/bin/apptainer --version
[2025-10-11 09:58:14] apptainer version 1.4.1-1.1
[2025-10-11 09:58:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:58:14] thA333
[2025-10-11 09:58:14] apptainer works
[2025-10-11 09:58:14] Set ATHENA_PROC_NUMBER=3
[2025-10-11 09:58:14] Set ATHENA_CORE_NUMBER=3
[2025-10-11 09:58:14] Starting ATLAS job with PandaID=6837669450
[2025-10-11 09:58:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 11:27:40]  *** The last 200 lines of the pilot log: ***
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | job 6837669450 has completed (purged errors)
[2025-10-11 11:27:40] 2025-10-11 09:27:09,004 | INFO     | overall cleanup function is called
[2025-10-11 11:27:40] 2025-10-11 09:27:10,010 | INFO     | --- collectZombieJob: --- 10, [2475605]
[2025-10-11 11:27:40] 2025-10-11 09:27:10,010 | INFO     | zombie collector waiting for pid 2475605
[2025-10-11 11:27:40] 2025-10-11 09:27:10,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 11:27:40] 2025-10-11 09:27:10,011 | INFO     | collected zombie processes
[2025-10-11 11:27:40] 2025-10-11 09:27:10,011 | INFO     | will attempt to kill all subprocesses of pid=2475605
[2025-10-11 11:27:40] 2025-10-11 09:27:10,049 | INFO     | process IDs to be killed: [2475605] (in reverse order)
[2025-10-11 11:27:40] 2025-10-11 09:27:10,074 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 11:27:40] 2025-10-11 09:27:10,074 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 11:27:40] 2025-10-11 09:27:10,075 | INFO     | did not find any defunct processes belonging to 2475605
[2025-10-11 11:27:40] 2025-10-11 09:27:10,076 | INFO     | did not find any defunct processes belonging to 2475605
[2025-10-11 11:27:40] 2025-10-11 09:27:10,076 | INFO     | ready for new job
[2025-10-11 11:27:40] 2025-10-11 09:27:10,076 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 11:27:40] 2025-10-11 09:27:10,077 | INFO     | ***************************************
[2025-10-11 11:27:40] 2025-10-11 09:27:10,077 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 11:27:40] 2025-10-11 09:27:10,077 | INFO     | ***************************************
[2025-10-11 11:27:40] 2025-10-11 09:27:10,077 | INFO     | 
[2025-10-11 11:27:40] 2025-10-11 09:27:10,077 | INFO     | architecture information:
[2025-10-11 11:27:40] 2025-10-11 09:27:10,078 | INFO     | executing command: cat /etc/os-release
[2025-10-11 11:27:40] 2025-10-11 09:27:10,087 | INFO     | cat /etc/os-release:
[2025-10-11 11:27:40] NAME="CentOS Linux"
[2025-10-11 11:27:40] VERSION="7 (Core)"
[2025-10-11 11:27:40] ID="centos"
[2025-10-11 11:27:40] ID_LIKE="rhel fedora"
[2025-10-11 11:27:40] VERSION_ID="7"
[2025-10-11 11:27:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 11:27:40] ANSI_COLOR="0;31"
[2025-10-11 11:27:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 11:27:40] HOME_URL="https://www.centos.org/"
[2025-10-11 11:27:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 11:27:40] 
[2025-10-11 11:27:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 11:27:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 11:27:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 11:27:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 11:27:40] 
[2025-10-11 11:27:40] 2025-10-11 09:27:10,087 | INFO     | ***************************************
[2025-10-11 11:27:40] 2025-10-11 09:27:10,591 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | INFO     | sufficient remaining disk space (230858686464 B)
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | INFO     | update_server=False
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:27:40] 2025-10-11 09:27:10,604 | INFO     | aborting loop
[2025-10-11 11:27:40] 2025-10-11 09:27:10,605 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:27:40] 2025-10-11 09:27:11,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 11:27:40] 2025-10-11 09:27:11,405 | INFO     | all job control threads have been joined
[2025-10-11 11:27:40] 2025-10-11 09:27:11,602 | INFO     | all payload control threads have been joined
[2025-10-11 11:27:40] 2025-10-11 09:27:11,603 | INFO     | all data control threads have been joined
[2025-10-11 11:27:40] 2025-10-11 09:27:11,610 | INFO     | [job] retrieve thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:11,611 | INFO     | [job] job monitor thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:11,611 | INFO     | [job] queue monitor thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,150 | INFO     | [data] copytool_in thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,238 | INFO     | [payload] failed_post thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,411 | INFO     | [job] control thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,608 | INFO     | [payload] control thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,609 | INFO     | [data] control thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,635 | INFO     | [job] validate thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,660 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,679 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,819 | INFO     | [payload] validate_post thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:12,983 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:13,131 | INFO     | [data] copytool_out thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:13,146 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 11:27:40] 2025-10-11 09:27:17,154 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:21,469 | INFO     | job.realtimelogging is not enabled
[2025-10-11 11:27:40] 2025-10-11 09:27:22,475 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 11:27:40] 2025-10-11 09:27:33,258 | INFO     | [monitor] cgroup control has ended
[2025-10-11 11:27:40] 2025-10-11 09:27:34,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140027361339200)>', '<ExcThread(monitor, started 140026872592128)>']
[2025-10-11 11:27:40] 2025-10-11 09:27:39,317 | INFO     | all workflow threads have been joined
[2025-10-11 11:27:40] 2025-10-11 09:27:39,317 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 11:27:40] 2025-10-11 09:27:39,318 | INFO     | traces error code: 0
[2025-10-11 11:27:40] 2025-10-11 09:27:39,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | INFO     | PID=2469141 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 11:27:40] 2025-10-11 09:27:40,817 | INFO     | [monitor] control thread has ended
[2025-10-11 11:27:40] 2025-10-11 09:27:40,859 [wrapper] ==== pilot stdout END ====
[2025-10-11 11:27:40] 2025-10-11 09:27:40,862 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 11:27:40] 2025-10-11 09:27:40,865 [wrapper] pilotpid: 2469141
[2025-10-11 11:27:40] 2025-10-11 09:27:40,868 [wrapper] Pilot exit status: 0
[2025-10-11 11:27:40] 2025-10-11 09:27:40,876 [wrapper] pandaids: 6837669450
[2025-10-11 11:27:40] 2025-10-11 09:27:40,892 [wrapper] cleanup supervisor_pilot 2488172 2469142
[2025-10-11 11:27:40] 2025-10-11 09:27:40,895 [wrapper] Test setup, not cleaning
[2025-10-11 11:27:40] 2025-10-11 09:27:40,898 [wrapper] apfmon messages muted
[2025-10-11 11:27:40] 2025-10-11 09:27:40,900 [wrapper] ==== wrapper stdout END ====
[2025-10-11 11:27:40] 2025-10-11 09:27:40,903 [wrapper] ==== wrapper stderr END ====
[2025-10-11 11:27:40]  *** Error codes and diagnostics ***
[2025-10-11 11:27:40]     "exeErrorCode": 0,
[2025-10-11 11:27:40]     "exeErrorDiag": "",
[2025-10-11 11:27:40]     "pilotErrorCode": 0,
[2025-10-11 11:27:40]     "pilotErrorDiag": "",
[2025-10-11 11:27:40]  *** Listing of results directory ***
[2025-10-11 11:27:40] total 410124
[2025-10-11 11:27:40] -rwx------ 1 boinc boinc     36292 Oct 10 18:45 runpilot2-wrapper.sh
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc    557409 Oct 10 18:45 pilot3.tar.gz
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc      5112 Oct 10 18:45 queuedata.json
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc       100 Oct 11 09:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 11:27:40] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 09:58 run_atlas
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc       105 Oct 11 09:58 job.xml
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc 220387235 Oct 11 09:58 EVNT.46676267._001692.pool.root.1
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc    569677 Oct 11 09:58 input.tar.gz
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:58 start_atlas.sh
[2025-10-11 11:27:40] drwxrwx--x 2 boinc boinc      4096 Oct 11 09:58 shared
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc         0 Oct 11 09:58 boinc_setup_complete
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc      6197 Oct 11 09:58 init_data.xml
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc         0 Oct 11 09:58 boinc_lockfile
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc      2550 Oct 11 09:58 pandaJob.out
[2025-10-11 11:27:40] -rw------- 1 boinc boinc    975525 Oct 11 09:58 agis_schedconf.cvmfs.json
[2025-10-11 11:27:40] -rw------- 1 boinc boinc   1560580 Oct 11 09:58 agis_ddmendpoints.agis.ALL.json
[2025-10-11 11:27:40] drwx------ 5 boinc boinc      4096 Oct 11 09:58 pilot3
[2025-10-11 11:27:40] -rw------- 1 boinc boinc 193620930 Oct 11 11:26 HITS.46676269._041745.pool.root.1
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc       529 Oct 11 11:26 boinc_task_state.xml
[2025-10-11 11:27:40] -rw------- 1 boinc boinc        95 Oct 11 11:26 pilot_heartbeat.json
[2025-10-11 11:27:40] -rw------- 1 boinc boinc      1019 Oct 11 11:26 memory_monitor_summary.json
[2025-10-11 11:27:40] -rw------- 1 boinc boinc    255476 Oct 11 11:26 log.46676269._041745.job.log.tgz.1
[2025-10-11 11:27:40] -rw------- 1 boinc boinc      7756 Oct 11 11:27 heartbeat.json
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc      8192 Oct 11 11:27 boinc_mmap_file
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc        27 Oct 11 11:27 wrapper_checkpoint.txt
[2025-10-11 11:27:40] -rw------- 1 boinc boinc       747 Oct 11 11:27 pilotlog.txt
[2025-10-11 11:27:40] -rw------- 1 boinc boinc    777059 Oct 11 11:27 log.46676269._041745.job.log.1
[2025-10-11 11:27:40] -rw------- 1 boinc boinc       357 Oct 11 11:27 output.list
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc       620 Oct 11 11:27 runtime_log
[2025-10-11 11:27:40] -rw------- 1 boinc boinc   1054720 Oct 11 11:27 result.tar.gz
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc      8777 Oct 11 11:27 runtime_log.err
[2025-10-11 11:27:40] -rw------- 1 boinc boinc       658 Oct 11 11:27 4y1NDmpQVR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmqGQMDmNbLWhm.diag
[2025-10-11 11:27:40] -rw-r--r-- 1 boinc boinc     12127 Oct 11 11:27 stderr.txt
[2025-10-11 11:27:40] HITS file was successfully produced:
[2025-10-11 11:27:40] -rw------- 1 boinc boinc 193620930 Oct 11 11:26 shared/HITS.pool.root.1
[2025-10-11 11:27:40]  *** Contents of shared directory: ***
[2025-10-11 11:27:40] total 405924
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc 220387235 Oct 11 09:58 ATLAS.root_0
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc    569677 Oct 11 09:58 input.tar.gz
[2025-10-11 11:27:40] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:58 start_atlas.sh
[2025-10-11 11:27:40] -rw------- 1 boinc boinc 193620930 Oct 11 11:26 HITS.pool.root.1
[2025-10-11 11:27:40] -rw------- 1 boinc boinc   1054720 Oct 11 11:27 result.tar.gz
11:27:42 (2465407): run_atlas exited; CPU time 15218.621679
11:27:42 (2465407): called boinc_finish(0)

</stderr_txt>
]]>

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