Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
19:46:26 (630918): wrapper (7.7.26015): starting
19:46:26 (630918): wrapper: running run_atlas (--nthreads 4)
[2025-10-11 19:46:26] Arguments: --nthreads 4
[2025-10-11 19:46:26] Threads: 4
[2025-10-11 19:46:26] Checking for CVMFS
[2025-10-11 19:46:26] No cvmfs_config command found, will try listing directly
[2025-10-11 19:46:26] CVMFS is ok
[2025-10-11 19:46:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 19:46:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 19:46:26] Further information can be found at the LHC@home message board.
[2025-10-11 19:46:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 19:46:26] Checking for apptainer binary...
[2025-10-11 19:46:26] which: no apptainer in ((null))
[2025-10-11 19:46:26] apptainer is not installed, using version from CVMFS
[2025-10-11 19:46:26] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 19:46:26] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot40/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut23.grid.cesnet.cz
[2025-10-11 19:46:26] apptainer works
[2025-10-11 19:46:26] Set ATHENA_PROC_NUMBER=4
[2025-10-11 19:46:26] Set ATHENA_CORE_NUMBER=4
[2025-10-11 19:46:26] Starting ATLAS job with PandaID=6837630942
[2025-10-11 19:46:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot40/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 23:20:28]  *** The last 200 lines of the pilot log: ***
[2025-10-11 23:20:28] 2025-10-11 21:19:10,567 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 23:20:28] 2025-10-11 21:19:10,575 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2509.22275
[2025-10-11 23:20:28] 2025-10-11 21:19:10,583 | INFO     | using path: /scratch/boinc/var/slot40/slots/0/PanDA_Pilot-6837630942/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,584 | INFO     | extracted standard info from prmon json
[2025-10-11 23:20:28] 2025-10-11 21:19:10,584 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 23:20:28] 2025-10-11 21:19:10,584 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 23:20:28] 2025-10-11 21:19:10,585 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 23:20:28] 2025-10-11 21:19:10,585 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 23:20:28] 2025-10-11 21:19:10,590 | INFO     | fitting pss+swap vs Time
[2025-10-11 23:20:28] 2025-10-11 21:19:10,590 | INFO     | sum of square deviations: 2830787960.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,592 | INFO     | sum of deviations: 28727255149.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,592 | INFO     | mean x: 1760211164.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,592 | INFO     | mean y: 2312119.7464114833
[2025-10-11 23:20:28] 2025-10-11 21:19:10,592 | INFO     | -- intersect: -17860571267.79855
[2025-10-11 23:20:28] 2025-10-11 21:19:10,592 | INFO     | intersect: -17860571267.79855
[2025-10-11 23:20:28] 2025-10-11 21:19:10,593 | INFO     | chi2: 1.3791232830648648
[2025-10-11 23:20:28] 2025-10-11 21:19:10,593 | INFO     | sum of square deviations: 2632440055.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,595 | INFO     | sum of deviations: 27530207314.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,595 | INFO     | mean x: 1760211011.5
[2025-10-11 23:20:28] 2025-10-11 21:19:10,595 | INFO     | mean y: 2311203.9803921566
[2025-10-11 23:20:28] 2025-10-11 21:19:10,595 | INFO     | -- intersect: -18406075331.14268
[2025-10-11 23:20:28] 2025-10-11 21:19:10,595 | INFO     | intersect: -18406075331.14268
[2025-10-11 23:20:28] 2025-10-11 21:19:10,596 | INFO     | chi2: 1.3795630533584795
[2025-10-11 23:20:28] 2025-10-11 21:19:10,596 | INFO     | current chi2=1.3795630533584795 (change=-0.03188767088591497 %)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,596 | INFO     | right removable region: 203
[2025-10-11 23:20:28] 2025-10-11 21:19:10,596 | INFO     | sum of square deviations: 2632440055.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,598 | INFO     | sum of deviations: 675074007.0000005
[2025-10-11 23:20:28] 2025-10-11 21:19:10,598 | INFO     | mean x: 1760211316.5
[2025-10-11 23:20:28] 2025-10-11 21:19:10,598 | INFO     | mean y: 2333438.745098039
[2025-10-11 23:20:28] 2025-10-11 21:19:10,598 | INFO     | -- intersect: -449062559.55671364
[2025-10-11 23:20:28] 2025-10-11 21:19:10,599 | INFO     | intersect: -449062559.55671364
[2025-10-11 23:20:28] 2025-10-11 21:19:10,599 | INFO     | chi2: 0.015670481531092254
[2025-10-11 23:20:28] 2025-10-11 21:19:10,599 | INFO     | current chi2=0.015670481531092254 (change=98.86373598912294 %)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,600 | INFO     | sum of square deviations: 2443580700.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,601 | INFO     | sum of deviations: 1988543941.0000002
[2025-10-11 23:20:28] 2025-10-11 21:19:10,601 | INFO     | mean x: 1760211469.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,601 | INFO     | mean y: 2332374.4673366835
[2025-10-11 23:20:28] 2025-10-11 21:19:10,601 | INFO     | -- intersect: -1430097441.154738
[2025-10-11 23:20:28] 2025-10-11 21:19:10,602 | INFO     | intersect: -1430097441.154738
[2025-10-11 23:20:28] 2025-10-11 21:19:10,602 | INFO     | chi2: 0.013659463465853448
[2025-10-11 23:20:28] 2025-10-11 21:19:10,602 | INFO     | current chi2=0.013659463465853448 (change=12.83316062272041 %)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,602 | INFO     | left removable region: 20
[2025-10-11 23:20:28] 2025-10-11 21:19:10,603 | INFO     | sum of square deviations: 1900284932.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,604 | INFO     | sum of deviations: 5084846173.999999
[2025-10-11 23:20:28] 2025-10-11 21:19:10,604 | INFO     | mean x: 1760211591.0
[2025-10-11 23:20:28] 2025-10-11 21:19:10,604 | INFO     | mean y: 2328545.5792349726
[2025-10-11 23:20:28] 2025-10-11 21:19:10,604 | INFO     | -- intersect: -4707704683.230685
[2025-10-11 23:20:28] 2025-10-11 21:19:10,604 | INFO     | intersect: -4707704683.230685
[2025-10-11 23:20:28] 2025-10-11 21:19:10,605 | INFO     | chi2: 0.0013613847307624614
[2025-10-11 23:20:28] 2025-10-11 21:19:10,605 | INFO     | -- intersect: -4707704683.230685
[2025-10-11 23:20:28] 2025-10-11 21:19:10,605 | INFO     | current memory leak: 2.68 B/s (using 183 data points, chi2=0.00)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,606 | INFO     | could have reported an average CPU frequency of 2515 MHz (11 samples)
[2025-10-11 23:20:28] 2025-10-11 21:19:10,606 | INFO     | ..............................
[2025-10-11 23:20:28] 2025-10-11 21:19:10,606 | INFO     | . Timing measurements:
[2025-10-11 23:20:28] 2025-10-11 21:19:10,606 | INFO     | . get job = 0 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,606 | INFO     | . initial setup = 1 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | . payload setup = 4 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | . stage-in = 0 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | . payload execution = 12724 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | . stage-out = 1 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | . log creation = 0 s
[2025-10-11 23:20:28] 2025-10-11 21:19:10,607 | INFO     | ..............................
[2025-10-11 23:20:28] 2025-10-11 21:19:11,091 | INFO     | 
[2025-10-11 23:20:28] 2025-10-11 21:19:11,092 | INFO     | job summary report
[2025-10-11 23:20:28] 2025-10-11 21:19:11,092 | INFO     | --------------------------------------------------
[2025-10-11 23:20:28] 2025-10-11 21:19:11,092 | INFO     | PanDA job id: 6837630942
[2025-10-11 23:20:28] 2025-10-11 21:19:11,092 | INFO     | task id: 46676269
[2025-10-11 23:20:28] 2025-10-11 21:19:11,092 | INFO     | errors: (none)
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | pilot state: finished 
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | transexitcode: 0
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | exeerrorcode: 0
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | exeerrordiag: 
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | exitcode: 0
[2025-10-11 23:20:28] 2025-10-11 21:19:11,093 | INFO     | exitmsg: OK
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | cpuconsumptiontime: 49008 s
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | nevents: 400
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | neventsw: 0
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | pid: 652516
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | pgrp: 652516
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | corecount: 4
[2025-10-11 23:20:28] 2025-10-11 21:19:11,094 | INFO     | event service: False
[2025-10-11 23:20:28] 2025-10-11 21:19:11,095 | INFO     | sizes: {0: 2348868, 1: 2348868, 4: 2349158, 11: 2349186, 12732: 2379241, 12734: 2388445, 12740: 2388583}
[2025-10-11 23:20:28] 2025-10-11 21:19:11,095 | INFO     | --------------------------------------------------
[2025-10-11 23:20:28] 2025-10-11 21:19:11,095 | INFO     | 
[2025-10-11 23:20:28] 2025-10-11 21:19:11,095 | INFO     | executing command: ls -lF /scratch/boinc/var/slot40/slots/0
[2025-10-11 23:20:28] 2025-10-11 21:19:11,114 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,114 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,114 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,115 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,116 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,117 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 23:20:28] 2025-10-11 21:19:11,117 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,117 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 23:20:28] 2025-10-11 21:19:11,117 | INFO     | job 6837630942 has completed (purged errors)
[2025-10-11 23:20:28] 2025-10-11 21:19:11,117 | INFO     | overall cleanup function is called
[2025-10-11 23:20:28] 2025-10-11 21:19:11,171 | INFO     | PID=635059 has CPU usage=11.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 23:20:28] 2025-10-11 21:19:11,171 | INFO     | .. there are 3 such processes running
[2025-10-11 23:20:28] 2025-10-11 21:19:12,123 | INFO     | --- collectZombieJob: --- 10, [652516]
[2025-10-11 23:20:28] 2025-10-11 21:19:12,124 | INFO     | zombie collector waiting for pid 652516
[2025-10-11 23:20:28] 2025-10-11 21:19:12,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 23:20:28] 2025-10-11 21:19:12,124 | INFO     | collected zombie processes
[2025-10-11 23:20:28] 2025-10-11 21:19:12,124 | INFO     | will attempt to kill all subprocesses of pid=652516
[2025-10-11 23:20:28] 2025-10-11 21:19:12,440 | INFO     | process IDs to be killed: [652516] (in reverse order)
[2025-10-11 23:20:28] 2025-10-11 21:19:12,519 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 23:20:28] 2025-10-11 21:19:12,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 23:20:28] 2025-10-11 21:19:12,527 | INFO     | did not find any defunct processes belonging to 652516
[2025-10-11 23:20:28] 2025-10-11 21:19:12,534 | INFO     | did not find any defunct processes belonging to 652516
[2025-10-11 23:20:28] 2025-10-11 21:19:12,535 | INFO     | ready for new job
[2025-10-11 23:20:28] 2025-10-11 21:19:12,535 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 23:20:28] 2025-10-11 21:19:12,537 | INFO     | ***************************************
[2025-10-11 23:20:28] 2025-10-11 21:19:12,537 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 23:20:28] 2025-10-11 21:19:12,537 | INFO     | ***************************************
[2025-10-11 23:20:28] 2025-10-11 21:19:12,537 | INFO     | 
[2025-10-11 23:20:28] 2025-10-11 21:19:12,540 | INFO     | architecture information:
[2025-10-11 23:20:28] 2025-10-11 21:19:12,540 | INFO     | executing command: cat /etc/os-release
[2025-10-11 23:20:28] 2025-10-11 21:19:12,554 | INFO     | cat /etc/os-release:
[2025-10-11 23:20:28] NAME="CentOS Linux"
[2025-10-11 23:20:28] VERSION="7 (Core)"
[2025-10-11 23:20:28] ID="centos"
[2025-10-11 23:20:28] ID_LIKE="rhel fedora"
[2025-10-11 23:20:28] VERSION_ID="7"
[2025-10-11 23:20:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 23:20:28] ANSI_COLOR="0;31"
[2025-10-11 23:20:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 23:20:28] HOME_URL="https://www.centos.org/"
[2025-10-11 23:20:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 23:20:28] 
[2025-10-11 23:20:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 23:20:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 23:20:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 23:20:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 23:20:28] 
[2025-10-11 23:20:28] 2025-10-11 21:19:12,554 | INFO     | ***************************************
[2025-10-11 23:20:28] 2025-10-11 21:19:13,057 | INFO     | executing command: df -mP /scratch/boinc/var/slot40/slots/0
[2025-10-11 23:20:28] 2025-10-11 21:19:13,070 | INFO     | sufficient remaining disk space (1680173170688 B)
[2025-10-11 23:20:28] 2025-10-11 21:19:13,071 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 23:20:28] 2025-10-11 21:19:13,071 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 23:20:28] 2025-10-11 21:19:13,071 | INFO     | update_server=False
[2025-10-11 23:20:28] 2025-10-11 21:19:13,071 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 23:20:28] 2025-10-11 21:19:13,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 23:20:28] 2025-10-11 21:19:13,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:20:28] 2025-10-11 21:19:13,072 | INFO     | aborting loop
[2025-10-11 23:20:28] 2025-10-11 21:19:13,230 | INFO     | all data control threads have been joined
[2025-10-11 23:20:28] 2025-10-11 21:19:14,001 | INFO     | all job control threads have been joined
[2025-10-11 23:20:28] 2025-10-11 21:19:14,076 | INFO     | all payload control threads have been joined
[2025-10-11 23:20:28] 2025-10-11 21:19:14,077 | INFO     | [job] retrieve thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,078 | INFO     | [job] job monitor thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,098 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,174 | INFO     | [payload] validate_post thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,235 | INFO     | [data] control thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,262 | INFO     | [data] copytool_in thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,268 | INFO     | [job] validate thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,534 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:14,860 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:15,002 | INFO     | [payload] failed_post thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:15,006 | INFO     | [job] control thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:15,078 | INFO     | [data] copytool_out thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:15,081 | INFO     | [payload] control thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:15,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 23:20:28] 2025-10-11 21:19:15,727 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 23:20:28] 2025-10-11 21:19:16,733 | INFO     | [job] queue monitor thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:19,445 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:23,135 | INFO     | job.realtimelogging is not enabled
[2025-10-11 23:20:28] 2025-10-11 21:19:24,140 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 23:20:28] 2025-10-11 21:19:43,639 | INFO     | PID=635059 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-11 23:20:28] 2025-10-11 21:19:43,639 | INFO     | .. there are 3 such processes running
[2025-10-11 23:20:28] 2025-10-11 21:19:43,640 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 23:20:28] 2025-10-11 21:19:43,641 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 23:20:28] 2025-10-11 21:19:43,641 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 23:20:28] 2025-10-11 21:19:55,958 | INFO     | [monitor] cgroup control has ended
[2025-10-11 23:20:28] 2025-10-11 21:19:56,061 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22735381067584)>', '<ExcThread(monitor, started 22734805399296)>']
[2025-10-11 23:20:28] 2025-10-11 21:19:56,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 23:20:28] 2025-10-11 21:19:56,695 | INFO     | [monitor] control thread has ended
[2025-10-11 23:20:28] 2025-10-11 21:20:01,087 | INFO     | all workflow threads have been joined
[2025-10-11 23:20:28] 2025-10-11 21:20:01,088 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 23:20:28] 2025-10-11 21:20:01,088 | INFO     | traces error code: 0
[2025-10-11 23:20:28] 2025-10-11 21:20:01,088 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 23:20:28] 2025-10-11 21:20:01,214 [wrapper] ==== pilot stdout END ====
[2025-10-11 23:20:28] 2025-10-11 21:20:01,217 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 23:20:28] 2025-10-11 21:20:01,219 [wrapper] pilotpid: 635059
[2025-10-11 23:20:28] 2025-10-11 21:20:01,222 [wrapper] Pilot exit status: 0
[2025-10-11 23:20:28] 2025-10-11 21:20:01,232 [wrapper] pandaids: 6837630942
[2025-10-11 23:20:28] 2025-10-11 21:20:01,288 [wrapper] cleanup supervisor_pilot  850426 635061
[2025-10-11 23:20:28] 2025-10-11 21:20:01,290 [wrapper] Test setup, not cleaning
[2025-10-11 23:20:28] 2025-10-11 21:20:01,293 [wrapper] apfmon messages muted
[2025-10-11 23:20:28] 2025-10-11 21:20:01,295 [wrapper] ==== wrapper stdout END ====
[2025-10-11 23:20:28] 2025-10-11 21:20:01,297 [wrapper] ==== wrapper stderr END ====
[2025-10-11 23:20:28]  *** Error codes and diagnostics ***
[2025-10-11 23:20:28]     "exeErrorCode": 0,
[2025-10-11 23:20:28]     "exeErrorDiag": "",
[2025-10-11 23:20:28]     "pilotErrorCode": 0,
[2025-10-11 23:20:28]     "pilotErrorDiag": "",
[2025-10-11 23:20:28]  *** Listing of results directory ***
[2025-10-11 23:20:28] total 411472
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc    557409 Oct 10 15:43 pilot3.tar.gz
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc      5112 Oct 10 15:56 queuedata.json
[2025-10-11 23:20:28] -rwx------ 1 boinc boinc     36292 Oct 10 15:57 runpilot2-wrapper.sh
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc       100 Oct 11 19:46 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 23:20:28] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 19:46 run_atlas
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc       105 Oct 11 19:46 job.xml
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc 219890956 Oct 11 19:46 EVNT.46676267._001604.pool.root.1
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc      6421 Oct 11 19:46 init_data.xml
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc     15120 Oct 11 19:46 start_atlas.sh
[2025-10-11 23:20:28] drwxrwx--x 2 boinc boinc      4096 Oct 11 19:46 shared
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc    569685 Oct 11 19:46 input.tar.gz
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc         0 Oct 11 19:46 boinc_lockfile
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc      2550 Oct 11 19:46 pandaJob.out
[2025-10-11 23:20:28] -rw------- 1 boinc boinc    975520 Oct 11 19:46 agis_schedconf.cvmfs.json
[2025-10-11 23:20:28] drwx------ 5 boinc boinc      4096 Oct 11 19:46 pilot3
[2025-10-11 23:20:28] -rw------- 1 boinc boinc 193143863 Oct 11 23:18 HITS.46676269._039539.pool.root.1
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc       528 Oct 11 23:18 boinc_task_state.xml
[2025-10-11 23:20:28] -rw------- 1 boinc boinc      1034 Oct 11 23:19 memory_monitor_summary.json
[2025-10-11 23:20:28] -rw------- 1 boinc boinc   1560580 Oct 11 23:19 agis_ddmendpoints.agis.ALL.json
[2025-10-11 23:20:28] -rw------- 1 boinc boinc    392087 Oct 11 23:19 log.46676269._039539.job.log.tgz.1
[2025-10-11 23:20:28] -rw------- 1 boinc boinc      7829 Oct 11 23:19 heartbeat.json
[2025-10-11 23:20:28] -rw------- 1 boinc boinc        95 Oct 11 23:19 pilot_heartbeat.json
[2025-10-11 23:20:28] -rw------- 1 boinc boinc      4905 Oct 11 23:20 pilotlog.txt
[2025-10-11 23:20:28] -rw------- 1 boinc boinc   1812119 Oct 11 23:20 log.46676269._039539.job.log.1
[2025-10-11 23:20:28] -rw------- 1 boinc boinc       357 Oct 11 23:20 output.list
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc       620 Oct 11 23:20 runtime_log
[2025-10-11 23:20:28] -rw------- 1 boinc boinc   2222080 Oct 11 23:20 result.tar.gz
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc      9070 Oct 11 23:20 runtime_log.err
[2025-10-11 23:20:28] -rw------- 1 boinc boinc       665 Oct 11 23:20 gheMDmtnSR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmK3PMDmd2lJpn.diag
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc        26 Oct 11 23:20 wrapper_checkpoint.txt
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc      8192 Oct 11 23:20 boinc_mmap_file
[2025-10-11 23:20:28] -rw-r--r-- 1 boinc boinc     20941 Oct 11 23:20 stderr.txt
[2025-10-11 23:20:28] HITS file was successfully produced:
[2025-10-11 23:20:28] -rw------- 1 boinc boinc 193143863 Oct 11 23:18 shared/HITS.pool.root.1
[2025-10-11 23:20:28]  *** Contents of shared directory: ***
[2025-10-11 23:20:28] total 406112
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc 219890956 Oct 11 19:46 ATLAS.root_0
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc     15120 Oct 11 19:46 start_atlas.sh
[2025-10-11 23:20:28] -rw-r--r-- 2 boinc boinc    569685 Oct 11 19:46 input.tar.gz
[2025-10-11 23:20:28] -rw------- 1 boinc boinc 193143863 Oct 11 23:18 HITS.pool.root.1
[2025-10-11 23:20:28] -rw------- 1 boinc boinc   2222080 Oct 11 23:20 result.tar.gz
23:20:30 (630918): run_atlas exited; CPU time 49491.071986
23:20:30 (630918): called boinc_finish(0)

</stderr_txt>
]]>

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