Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:14:04 (2184284): wrapper (7.7.26015): starting
09:14:04 (2184284): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 09:14:04] Arguments: --nthreads 3
[2025-10-11 09:14:04] Threads: 3
[2025-10-11 09:14:04] Checking for CVMFS
[2025-10-11 09:14:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 09:14:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 09:14:04] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 09:14:04] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 09:14:04] 2.9.2.0 1484052 2472 61988 151575 0 57 28583825 36864001 0 130560 0 1833515 99.990 83967 1030 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 09:14:04] CVMFS is ok
[2025-10-11 09:14:04] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 09:14:04] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 09:14:04] Further information can be found at the LHC@home message board.
[2025-10-11 09:14:04] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 09:14:04] Checking for apptainer binary...
[2025-10-11 09:14:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 09:14:05] Running /usr/bin/apptainer --version
[2025-10-11 09:14:05] apptainer version 1.4.1-1.1
[2025-10-11 09:14:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 09:14:05] magicA244b
[2025-10-11 09:14:05] apptainer works
[2025-10-11 09:14:05] Set ATHENA_PROC_NUMBER=3
[2025-10-11 09:14:05] Set ATHENA_CORE_NUMBER=3
[2025-10-11 09:14:05] Starting ATLAS job with PandaID=6837630929
[2025-10-11 09:14:05] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 10:45:33]  *** The last 200 lines of the pilot log: ***
[2025-10-11 10:45:33] 2025-10-11 08:45:01,843 | INFO     | zombie collector waiting for pid 2194470
[2025-10-11 10:45:33] 2025-10-11 08:45:01,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 10:45:33] 2025-10-11 08:45:01,843 | INFO     | collected zombie processes
[2025-10-11 10:45:33] 2025-10-11 08:45:01,843 | INFO     | will attempt to kill all subprocesses of pid=2194470
[2025-10-11 10:45:33] 2025-10-11 08:45:01,882 | INFO     | process IDs to be killed: [2194470] (in reverse order)
[2025-10-11 10:45:33] 2025-10-11 08:45:01,908 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 10:45:33] 2025-10-11 08:45:01,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 10:45:33] 2025-10-11 08:45:01,909 | INFO     | did not find any defunct processes belonging to 2194470
[2025-10-11 10:45:33] 2025-10-11 08:45:01,910 | INFO     | did not find any defunct processes belonging to 2194470
[2025-10-11 10:45:33] 2025-10-11 08:45:01,910 | INFO     | ready for new job
[2025-10-11 10:45:33] 2025-10-11 08:45:01,910 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 10:45:33] 2025-10-11 08:45:01,911 | INFO     | ***************************************
[2025-10-11 10:45:33] 2025-10-11 08:45:01,911 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 10:45:33] 2025-10-11 08:45:01,911 | INFO     | ***************************************
[2025-10-11 10:45:33] 2025-10-11 08:45:01,911 | INFO     | 
[2025-10-11 10:45:33] 2025-10-11 08:45:01,911 | INFO     | architecture information:
[2025-10-11 10:45:33] 2025-10-11 08:45:01,912 | INFO     | executing command: cat /etc/os-release
[2025-10-11 10:45:33] 2025-10-11 08:45:01,922 | INFO     | cat /etc/os-release:
[2025-10-11 10:45:33] NAME="CentOS Linux"
[2025-10-11 10:45:33] VERSION="7 (Core)"
[2025-10-11 10:45:33] ID="centos"
[2025-10-11 10:45:33] ID_LIKE="rhel fedora"
[2025-10-11 10:45:33] VERSION_ID="7"
[2025-10-11 10:45:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 10:45:33] ANSI_COLOR="0;31"
[2025-10-11 10:45:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 10:45:33] HOME_URL="https://www.centos.org/"
[2025-10-11 10:45:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 10:45:33] 
[2025-10-11 10:45:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 10:45:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 10:45:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 10:45:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 10:45:33] 
[2025-10-11 10:45:33] 2025-10-11 08:45:01,922 | INFO     | ***************************************
[2025-10-11 10:45:33] 2025-10-11 08:45:02,425 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | INFO     | sufficient remaining disk space (331491573760 B)
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | INFO     | update_server=False
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | INFO     | aborting loop
[2025-10-11 10:45:33] 2025-10-11 08:45:02,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 10:45:33] 2025-10-11 08:45:02,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 10:45:33] 2025-10-11 08:45:02,782 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 10:45:33] 2025-10-11 08:45:03,185 | INFO     | all payload control threads have been joined
[2025-10-11 10:45:33] 2025-10-11 08:45:03,235 | INFO     | all data control threads have been joined
[2025-10-11 10:45:33] 2025-10-11 08:45:03,444 | INFO     | [job] queue monitor thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,445 | INFO     | [job] job monitor thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,445 | INFO     | [job] retrieve thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,662 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,747 | INFO     | [data] copytool_in thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,864 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:03,980 | INFO     | all job control threads have been joined
[2025-10-11 10:45:33] 2025-10-11 08:45:04,090 | INFO     | [job] validate thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,191 | INFO     | [payload] control thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,207 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,241 | INFO     | [data] control thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,354 | INFO     | [payload] failed_post thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,788 | INFO     | [data] copytool_out thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,885 | INFO     | [payload] validate_post thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:04,986 | INFO     | [job] control thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:06,449 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:12,625 | INFO     | job.realtimelogging is not enabled
[2025-10-11 10:45:33] 2025-10-11 08:45:13,631 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 10:45:33] 2025-10-11 08:45:21,706 | INFO     | [monitor] cgroup control has ended
[2025-10-11 10:45:33] 2025-10-11 08:45:23,455 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140436725770048)>', '<ExcThread(monitor, started 140436085659392)>']
[2025-10-11 10:45:33] 2025-10-11 08:45:28,480 | INFO     | all workflow threads have been joined
[2025-10-11 10:45:33] 2025-10-11 08:45:28,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 10:45:33] 2025-10-11 08:45:28,481 | INFO     | traces error code: 0
[2025-10-11 10:45:33] 2025-10-11 08:45:28,482 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | INFO     | PID=2188015 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 10:45:33] 2025-10-11 08:45:33,154 | INFO     | [monitor] control thread has ended
[2025-10-11 10:45:33] 2025-10-11 08:45:33,199 [wrapper] ==== pilot stdout END ====
[2025-10-11 10:45:33] 2025-10-11 08:45:33,202 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 10:45:33] 2025-10-11 08:45:33,205 [wrapper] pilotpid: 2188015
[2025-10-11 10:45:33] 2025-10-11 08:45:33,207 [wrapper] Pilot exit status: 0
[2025-10-11 10:45:33] 2025-10-11 08:45:33,214 [wrapper] pandaids: 6837630929
[2025-10-11 10:45:33] 2025-10-11 08:45:33,229 [wrapper] cleanup supervisor_pilot 2207046 2188016
[2025-10-11 10:45:33] 2025-10-11 08:45:33,232 [wrapper] Test setup, not cleaning
[2025-10-11 10:45:33] 2025-10-11 08:45:33,235 [wrapper] apfmon messages muted
[2025-10-11 10:45:33] 2025-10-11 08:45:33,237 [wrapper] ==== wrapper stdout END ====
[2025-10-11 10:45:33] 2025-10-11 08:45:33,240 [wrapper] ==== wrapper stderr END ====
[2025-10-11 10:45:33]  *** Error codes and diagnostics ***
[2025-10-11 10:45:33]     "exeErrorCode": 0,
[2025-10-11 10:45:33]     "exeErrorDiag": "",
[2025-10-11 10:45:33]     "pilotErrorCode": 0,
[2025-10-11 10:45:33]     "pilotErrorDiag": "",
[2025-10-11 10:45:33]  *** Listing of results directory ***
[2025-10-11 10:45:33] total 413756
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc    557409 Oct 10 15:43 pilot3.tar.gz
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc      5112 Oct 10 15:56 queuedata.json
[2025-10-11 10:45:33] -rwx------ 1 boinc boinc     36292 Oct 10 15:57 runpilot2-wrapper.sh
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc       100 Oct 11 09:14 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 10:45:33] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 09:14 run_atlas
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc       105 Oct 11 09:14 job.xml
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc 219890956 Oct 11 09:14 EVNT.46676267._001604.pool.root.1
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc    569679 Oct 11 09:14 input.tar.gz
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:14 start_atlas.sh
[2025-10-11 10:45:33] drwxrwx--x 2 boinc boinc      4096 Oct 11 09:14 shared
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc         0 Oct 11 09:14 boinc_setup_complete
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc      6200 Oct 11 09:14 init_data.xml
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc         0 Oct 11 09:14 boinc_lockfile
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc      2550 Oct 11 09:14 pandaJob.out
[2025-10-11 10:45:33] -rw------- 1 boinc boinc    975525 Oct 11 09:14 agis_schedconf.cvmfs.json
[2025-10-11 10:45:33] -rw------- 1 boinc boinc   1560580 Oct 11 09:14 agis_ddmendpoints.agis.ALL.json
[2025-10-11 10:45:33] drwx------ 5 boinc boinc      4096 Oct 11 09:14 pilot3
[2025-10-11 10:45:33] -rw------- 1 boinc boinc 197815981 Oct 11 10:44 HITS.46676269._039526.pool.root.1
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc       529 Oct 11 10:44 boinc_task_state.xml
[2025-10-11 10:45:33] -rw------- 1 boinc boinc        95 Oct 11 10:44 pilot_heartbeat.json
[2025-10-11 10:45:33] -rw------- 1 boinc boinc      1018 Oct 11 10:44 memory_monitor_summary.json
[2025-10-11 10:45:33] -rw------- 1 boinc boinc    251423 Oct 11 10:44 log.46676269._039526.job.log.tgz.1
[2025-10-11 10:45:33] -rw------- 1 boinc boinc      7767 Oct 11 10:45 heartbeat.json
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc      8192 Oct 11 10:45 boinc_mmap_file
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc        27 Oct 11 10:45 wrapper_checkpoint.txt
[2025-10-11 10:45:33] -rw------- 1 boinc boinc       747 Oct 11 10:45 pilotlog.txt
[2025-10-11 10:45:33] -rw------- 1 boinc boinc    794618 Oct 11 10:45 log.46676269._039526.job.log.1
[2025-10-11 10:45:33] -rw------- 1 boinc boinc       357 Oct 11 10:45 output.list
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc       620 Oct 11 10:45 runtime_log
[2025-10-11 10:45:33] -rw------- 1 boinc boinc   1064960 Oct 11 10:45 result.tar.gz
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc      8797 Oct 11 10:45 runtime_log.err
[2025-10-11 10:45:33] -rw------- 1 boinc boinc       662 Oct 11 10:45 LvGMDmtnSR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm72PMDmk2m3em.diag
[2025-10-11 10:45:33] -rw-r--r-- 1 boinc boinc     10612 Oct 11 10:45 stderr.txt
[2025-10-11 10:45:33] HITS file was successfully produced:
[2025-10-11 10:45:33] -rw------- 1 boinc boinc 197815981 Oct 11 10:44 shared/HITS.pool.root.1
[2025-10-11 10:45:33]  *** Contents of shared directory: ***
[2025-10-11 10:45:33] total 409544
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc 219890956 Oct 11 09:14 ATLAS.root_0
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc    569679 Oct 11 09:14 input.tar.gz
[2025-10-11 10:45:33] -rw-r--r-- 2 boinc boinc     15120 Oct 11 09:14 start_atlas.sh
[2025-10-11 10:45:33] -rw------- 1 boinc boinc 197815981 Oct 11 10:44 HITS.pool.root.1
[2025-10-11 10:45:33] -rw------- 1 boinc boinc   1064960 Oct 11 10:45 result.tar.gz
10:45:56 (2184284): run_atlas exited; CPU time 15600.358523
10:45:56 (2184284): called boinc_finish(0)

</stderr_txt>
]]>

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