Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:40:23 (1277807): wrapper (7.7.26015): starting
21:40:23 (1277807): wrapper: running run_atlas (--nthreads 8)
[2025-10-10 21:40:23] Arguments: --nthreads 8
[2025-10-10 21:40:23] Threads: 8
[2025-10-10 21:40:23] Checking for CVMFS
[2025-10-10 21:40:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 21:40:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 21:40:24] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 21:40:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 21:40:24] 2.13.2.0 3608313 127156 266084 151567 1 142 25713779 32935936 20387 16776704 0 175995790 99.615 191320686 29404 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 21:40:24] CVMFS is ok
[2025-10-10 21:40:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 21:40:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 21:40:24] Further information can be found at the LHC@home message board.
[2025-10-10 21:40:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 21:40:24] Checking for apptainer binary...
[2025-10-10 21:40:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 21:40:25] Running /usr/bin/apptainer --version
[2025-10-10 21:40:25] apptainer version 1.4.3-1.el9
[2025-10-10 21:40:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 21:40:25] c6-6-39-3.aglt2.org
[2025-10-10 21:40:25] apptainer works
[2025-10-10 21:40:25] Set ATHENA_PROC_NUMBER=8
[2025-10-10 21:40:25] Set ATHENA_CORE_NUMBER=8
[2025-10-10 21:40:25] Starting ATLAS job with PandaID=6837668412
[2025-10-10 21:40:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
03:09:55 (2761596): wrapper (7.7.26015): starting
03:09:55 (2761596): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 03:09:55] Arguments: --nthreads 8
[2025-10-11 03:09:55] Threads: 8
[2025-10-11 03:09:55] This job has been restarted, cleaning up previous attempt
[2025-10-11 03:09:55] Checking for CVMFS
[2025-10-11 03:09:56] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 03:09:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 03:09:56] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 03:09:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 03:09:58] 2.13.2.0 3608313 127486 290564 151575 3 652 22785834 32935936 25324 16776704 0 176954767 99.614 192898195 29393 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 03:09:58] CVMFS is ok
[2025-10-11 03:09:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 03:09:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 03:09:58] Further information can be found at the LHC@home message board.
[2025-10-11 03:09:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 03:09:58] Checking for apptainer binary...
[2025-10-11 03:09:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 03:09:58] Running /usr/bin/apptainer --version
[2025-10-11 03:09:58] apptainer version 1.4.3-1.el9
[2025-10-11 03:09:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 03:09:59] c6-6-39-3.aglt2.org
[2025-10-11 03:09:59] apptainer works
[2025-10-11 03:09:59] Set ATHENA_PROC_NUMBER=8
[2025-10-11 03:09:59] Set ATHENA_CORE_NUMBER=8
[2025-10-11 03:09:59] Starting ATLAS job with PandaID=6837668412
[2025-10-11 03:09:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:13:50]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:13:50] 2025-10-11 13:13:13,251 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 09:13:50] 2025-10-11 13:13:13,251 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 09:13:50] 2025-10-11 13:13:13,291 | INFO     | fitting pss+swap vs Time
[2025-10-11 09:13:50] 2025-10-11 13:13:13,292 | INFO     | sum of square deviations: 13755603185.946365
[2025-10-11 09:13:50] 2025-10-11 13:13:13,332 | INFO     | sum of deviations: 17417567441.449184
[2025-10-11 09:13:50] 2025-10-11 13:13:13,332 | INFO     | mean x: 1760177524.2062147
[2025-10-11 09:13:50] 2025-10-11 13:13:13,333 | INFO     | mean y: 2203754.4322033897
[2025-10-11 09:13:50] 2025-10-11 13:13:13,333 | INFO     | -- intersect: -2226561521.9685473
[2025-10-11 09:13:50] 2025-10-11 13:13:13,333 | INFO     | intersect: -2226561521.9685473
[2025-10-11 09:13:50] 2025-10-11 13:13:13,334 | INFO     | chi2: 4.556626273669827
[2025-10-11 09:13:50] 2025-10-11 13:13:13,370 | INFO     | time since job start (21743s) is within the limit (172800.0s)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,377 | INFO     | sum of square deviations: 13180977541.346664
[2025-10-11 09:13:50] 2025-10-11 13:13:13,418 | INFO     | sum of deviations: 78009848099.2406
[2025-10-11 09:13:50] 2025-10-11 13:13:13,418 | INFO     | mean x: 1760177371.7134671
[2025-10-11 09:13:50] 2025-10-11 13:13:13,418 | INFO     | mean y: 2219746.842406877
[2025-10-11 09:13:50] 2025-10-11 13:13:13,418 | INFO     | -- intersect: -10415153999.859192
[2025-10-11 09:13:50] 2025-10-11 13:13:13,418 | INFO     | intersect: -10415153999.859192
[2025-10-11 09:13:50] 2025-10-11 13:13:13,419 | INFO     | chi2: 2.3531209216905884
[2025-10-11 09:13:50] 2025-10-11 13:13:13,419 | INFO     | current chi2=2.3531209216905884 (change=48.3582637600115 %)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,420 | INFO     | sum of square deviations: 12622541572.08138
[2025-10-11 09:13:50] 2025-10-11 13:13:13,459 | INFO     | sum of deviations: 78151524120.78485
[2025-10-11 09:13:50] 2025-10-11 13:13:13,459 | INFO     | mean x: 1760177219.2151163
[2025-10-11 09:13:50] 2025-10-11 13:13:13,459 | INFO     | mean y: 2219780.5029069767
[2025-10-11 09:13:50] 2025-10-11 13:13:13,459 | INFO     | -- intersect: -10895786109.895857
[2025-10-11 09:13:50] 2025-10-11 13:13:13,460 | INFO     | intersect: -10895786109.895857
[2025-10-11 09:13:50] 2025-10-11 13:13:13,496 | INFO     | chi2: 2.3501430514649972
[2025-10-11 09:13:50] 2025-10-11 13:13:13,497 | INFO     | current chi2=2.3501430514649972 (change=0.12654981722960984 %)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,497 | INFO     | right removable region: 343
[2025-10-11 09:13:50] 2025-10-11 13:13:13,498 | INFO     | sum of square deviations: 13180846390.916885
[2025-10-11 09:13:50] 2025-10-11 13:13:13,532 | INFO     | sum of deviations: -53375615692.25215
[2025-10-11 09:13:50] 2025-10-11 13:13:13,554 | INFO     | mean x: 1760177676.7163324
[2025-10-11 09:13:50] 2025-10-11 13:13:13,555 | INFO     | mean y: 2222479.553008596
[2025-10-11 09:13:50] 2025-10-11 13:13:13,555 | INFO     | -- intersect: 7130032366.423016
[2025-10-11 09:13:50] 2025-10-11 13:13:13,555 | INFO     | intersect: 7130032366.423016
[2025-10-11 09:13:50] 2025-10-11 13:13:13,556 | INFO     | chi2: 2.465179821832865
[2025-10-11 09:13:50] 2025-10-11 13:13:13,556 | INFO     | current chi2=2.465179821832865 (change=45.89901225655154 %)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,557 | INFO     | sum of square deviations: 12622343503.764517
[2025-10-11 09:13:50] 2025-10-11 13:13:13,589 | INFO     | sum of deviations: -72026046244.93896
[2025-10-11 09:13:50] 2025-10-11 13:13:13,590 | INFO     | mean x: 1760177829.2238371
[2025-10-11 09:13:50] 2025-10-11 13:13:13,590 | INFO     | mean y: 2227570.090116279
[2025-10-11 09:13:50] 2025-10-11 13:13:13,590 | INFO     | -- intersect: 10046214226.702784
[2025-10-11 09:13:50] 2025-10-11 13:13:13,590 | INFO     | intersect: 10046214226.702784
[2025-10-11 09:13:50] 2025-10-11 13:13:13,591 | INFO     | chi2: 2.3234058814435663
[2025-10-11 09:13:50] 2025-10-11 13:13:13,591 | INFO     | current chi2=2.3234058814435663 (change=5.751058772008342 %)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,591 | INFO     | left removable region: 20
[2025-10-11 09:13:50] 2025-10-11 13:13:13,632 | INFO     | sum of square deviations: 10448851947.182705
[2025-10-11 09:13:50] 2025-10-11 13:13:13,635 | INFO     | sum of deviations: -11687902208.476795
[2025-10-11 09:13:50] 2025-10-11 13:13:13,668 | INFO     | mean x: 1760177798.74613
[2025-10-11 09:13:50] 2025-10-11 13:13:13,668 | INFO     | mean y: 2244977.0185758513
[2025-10-11 09:13:50] 2025-10-11 13:13:13,668 | INFO     | -- intersect: 1971148937.4985309
[2025-10-11 09:13:50] 2025-10-11 13:13:13,668 | INFO     | intersect: 1971148937.4985309
[2025-10-11 09:13:50] 2025-10-11 13:13:13,669 | INFO     | chi2: 0.0681573298592012
[2025-10-11 09:13:50] 2025-10-11 13:13:13,669 | INFO     | -- intersect: 1971148937.4985309
[2025-10-11 09:13:50] 2025-10-11 13:13:13,669 | INFO     | current memory leak: -1.12 B/s (using 323 data points, chi2=0.07)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,670 | INFO     | could have reported an average CPU frequency of 2883 MHz (15 samples)
[2025-10-11 09:13:50] 2025-10-11 13:13:13,670 | INFO     | ..............................
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . Timing measurements:
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . get job = 0 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . initial setup = 3 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . payload setup = 29 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . stage-in = 0 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . payload execution = 21606 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . stage-out = 8 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,671 | INFO     | . log creation = 1 s
[2025-10-11 09:13:50] 2025-10-11 13:13:13,717 | INFO     | ..............................
[2025-10-11 09:13:50] 2025-10-11 13:13:14,825 | INFO     | 
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | job summary report
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | --------------------------------------------------
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | PanDA job id: 6837668412
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | task id: 46676269
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | errors: (none)
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | pilot state: finished 
[2025-10-11 09:13:50] 2025-10-11 13:13:14,826 | INFO     | transexitcode: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | exeerrorcode: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | exeerrordiag: 
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | exitcode: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | exitmsg: OK
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | cpuconsumptiontime: 43365 s
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | nevents: 400
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | neventsw: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | pid: 2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | pgrp: 2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | corecount: 8
[2025-10-11 09:13:50] 2025-10-11 13:13:14,827 | INFO     | event service: False
[2025-10-11 09:13:50] 2025-10-11 13:13:14,828 | INFO     | sizes: {0: 2348630, 1: 2348714, 2: 2348885, 3: 2348913, 4: 2348941, 14: 2348969, 21: 2349387, 25: 2349415, 21640: 2383114, 21649: 2392112, 21650: 2392168, 21698: 2
[2025-10-11 09:13:50] 2025-10-11 13:13:14,828 | INFO     | --------------------------------------------------
[2025-10-11 09:13:50] 2025-10-11 13:13:14,828 | INFO     | 
[2025-10-11 09:13:50] 2025-10-11 13:13:14,828 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 09:13:50] 2025-10-11 13:13:14,993 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,993 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,993 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,997 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,998 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,999 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:13:50] 2025-10-11 13:13:14,999 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,999 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:13:50] 2025-10-11 13:13:14,999 | INFO     | job 6837668412 has completed (purged errors)
[2025-10-11 09:13:50] 2025-10-11 13:13:14,999 | INFO     | overall cleanup function is called
[2025-10-11 09:13:50] 2025-10-11 13:13:16,038 | INFO     | --- collectZombieJob: --- 10, [2800904]
[2025-10-11 09:13:50] 2025-10-11 13:13:16,039 | INFO     | zombie collector waiting for pid 2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:16,039 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:13:50] 2025-10-11 13:13:16,039 | INFO     | collected zombie processes
[2025-10-11 09:13:50] 2025-10-11 13:13:16,039 | INFO     | will attempt to kill all subprocesses of pid=2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:18,579 | INFO     | process IDs to be killed: [2800904] (in reverse order)
[2025-10-11 09:13:50] 2025-10-11 13:13:18,931 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:13:50] 2025-10-11 13:13:18,932 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:13:50] 2025-10-11 13:13:19,001 | INFO     | did not find any defunct processes belonging to 2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:19,041 | INFO     | did not find any defunct processes belonging to 2800904
[2025-10-11 09:13:50] 2025-10-11 13:13:19,041 | INFO     | ready for new job
[2025-10-11 09:13:50] 2025-10-11 13:13:19,041 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:13:50] 2025-10-11 13:13:19,044 | INFO     | ***************************************
[2025-10-11 09:13:50] 2025-10-11 13:13:19,044 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:13:50] 2025-10-11 13:13:19,044 | INFO     | ***************************************
[2025-10-11 09:13:50] 2025-10-11 13:13:19,044 | INFO     | 
[2025-10-11 09:13:50] 2025-10-11 13:13:19,060 | INFO     | architecture information:
[2025-10-11 09:13:50] 2025-10-11 13:13:19,078 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:13:50] 2025-10-11 13:13:19,426 | INFO     | cat /etc/os-release:
[2025-10-11 09:13:50] NAME="CentOS Linux"
[2025-10-11 09:13:50] VERSION="7 (Core)"
[2025-10-11 09:13:50] ID="centos"
[2025-10-11 09:13:50] ID_LIKE="rhel fedora"
[2025-10-11 09:13:50] VERSION_ID="7"
[2025-10-11 09:13:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:13:50] ANSI_COLOR="0;31"
[2025-10-11 09:13:50] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:13:50] HOME_URL="https://www.centos.org/"
[2025-10-11 09:13:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:13:50] 
[2025-10-11 09:13:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:13:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:13:50] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:13:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:13:50] 
[2025-10-11 09:13:50] 2025-10-11 13:13:19,426 | INFO     | ***************************************
[2025-10-11 09:13:50] 2025-10-11 13:13:19,937 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 09:13:50] 2025-10-11 13:13:20,014 | INFO     | sufficient remaining disk space (73399271424 B)
[2025-10-11 09:13:50] 2025-10-11 13:13:20,014 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:13:50] 2025-10-11 13:13:20,015 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:13:50] 2025-10-11 13:13:20,015 | INFO     | update_server=False
[2025-10-11 09:13:50] 2025-10-11 13:13:20,015 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:13:50] 2025-10-11 13:13:20,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:13:50] 2025-10-11 13:13:20,177 | INFO     | all job control threads have been joined
[2025-10-11 09:13:50] 2025-10-11 13:13:20,491 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:13:50] 2025-10-11 13:13:20,492 | INFO     | aborting loop
[2025-10-11 09:13:50] 2025-10-11 13:13:20,662 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:13:50] 2025-10-11 13:13:20,673 | INFO     | all data control threads have been joined
[2025-10-11 09:13:50] 2025-10-11 13:13:21,033 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,042 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,183 | INFO     | [job] control thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,243 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,271 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,347 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,348 | INFO     | [job] validate thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,397 | INFO     | all payload control threads have been joined
[2025-10-11 09:13:50] 2025-10-11 13:13:21,470 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,497 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,679 | INFO     | [data] control thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,796 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:21,995 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:22,403 | INFO     | [payload] control thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:22,505 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:22,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:13:50] 2025-10-11 13:13:22,669 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:26,669 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:13:50] 2025-10-11 13:13:30,061 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:13:50] 2025-10-11 13:13:30,141 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295167514432)>', '<ExcThread(monitor, started 140294301415168)>']
[2025-10-11 09:13:50] 2025-10-11 13:13:35,166 | INFO     | all workflow threads have been joined
[2025-10-11 09:13:50] 2025-10-11 13:13:35,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:13:50] 2025-10-11 13:13:35,167 | INFO     | traces error code: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:35,167 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:13:50] 2025-10-11 13:13:48,189 | INFO     | PID=2778669 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 09:13:50] 2025-10-11 13:13:48,189 | INFO     | .. there are 36 such processes running
[2025-10-11 09:13:50] 2025-10-11 13:13:48,190 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:13:50] 2025-10-11 13:13:48,190 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:13:50] 2025-10-11 13:13:48,190 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:13:50] 2025-10-11 13:13:48,190 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:13:50] 2025-10-11 13:13:48,190 | INFO     | [monitor] control thread has ended
[2025-10-11 09:13:50] 2025-10-11 13:13:48,407 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:13:50] 2025-10-11 13:13:48,431 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:13:50] 2025-10-11 13:13:48,490 [wrapper] pilotpid: 2778669
[2025-10-11 09:13:50] 2025-10-11 13:13:48,532 [wrapper] Pilot exit status: 0
[2025-10-11 09:13:50] 2025-10-11 13:13:48,649 [wrapper] pandaids: 6837668412 6837668412
[2025-10-11 09:13:50] 2025-10-11 13:13:49,099 [wrapper] cleanup supervisor_pilot  115418 2778670
[2025-10-11 09:13:50] 2025-10-11 13:13:49,154 [wrapper] Test setup, not cleaning
[2025-10-11 09:13:50] 2025-10-11 13:13:49,186 [wrapper] apfmon messages muted
[2025-10-11 09:13:50] 2025-10-11 13:13:49,235 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:13:50] 2025-10-11 13:13:49,254 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:13:50]  *** Error codes and diagnostics ***
[2025-10-11 09:13:50]     "exeErrorCode": 0,
[2025-10-11 09:13:50]     "exeErrorDiag": "",
[2025-10-11 09:13:50]     "pilotErrorCode": 0,
[2025-10-11 09:13:50]     "pilotErrorDiag": "",
[2025-10-11 09:13:50]  *** Listing of results directory ***
[2025-10-11 09:13:50] total 634640
[2025-10-11 09:13:50] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 11:50 pilot3.tar.gz
[2025-10-11 09:13:50] -rwx------. 1 boincer umatlas     36292 Oct 10 11:53 runpilot2-wrapper.sh
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 11:53 queuedata.json
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas       100 Oct 10 21:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:13:50] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 21:40 run_atlas
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas       105 Oct 10 21:40 job.xml
[2025-10-11 09:13:50] -rw-r--r--. 3 boincer umatlas 223628144 Oct 10 21:40 EVNT.46676267._001672.pool.root.1
[2025-10-11 09:13:50] -rw-r--r--. 3 boincer umatlas 223628144 Oct 10 21:40 ATLAS.root_0
[2025-10-11 09:13:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 21:40 start_atlas.sh
[2025-10-11 09:13:50] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 21:40 shared
[2025-10-11 09:13:50] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 21:40 input.tar.gz
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas         0 Oct 10 21:40 boinc_lockfile
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 03:09 pandaJob.out
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas    975525 Oct 11 03:10 agis_schedconf.cvmfs.json
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas 192609813 Oct 11 09:09 HITS.46676269._041255.pool.root.1
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas       531 Oct 11 09:09 boinc_task_state.xml
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas      6843 Oct 11 09:10 init_data.xml
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas      1052 Oct 11 09:12 memory_monitor_summary.json
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas   1560580 Oct 11 09:12 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas    543615 Oct 11 09:12 log.46676269._041255.job.log.tgz.1
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas      7845 Oct 11 09:13 heartbeat.json
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas        97 Oct 11 09:13 pilot_heartbeat.json
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas       823 Oct 11 09:13 pilotlog.txt
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 09:13 boinc_mmap_file
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas        28 Oct 11 09:13 wrapper_checkpoint.txt
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas   2512134 Oct 11 09:13 log.46676269._041255.job.log.1
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas       357 Oct 11 09:13 output.list
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas       620 Oct 11 09:13 runtime_log
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas   3072000 Oct 11 09:13 result.tar.gz
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas       786 Oct 11 09:13 ZtYNDmibUR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmnDQMDmgp232m.diag
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas      8794 Oct 11 09:13 runtime_log.err
[2025-10-11 09:13:50] -rw-r--r--. 1 boincer umatlas     23230 Oct 11 09:13 stderr.txt
[2025-10-11 09:13:50] HITS file was successfully produced:
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas 192609813 Oct 11 09:09 shared/HITS.pool.root.1
[2025-10-11 09:13:50]  *** Contents of shared directory: ***
[2025-10-11 09:13:50] total 410064
[2025-10-11 09:13:50] -rw-r--r--. 3 boincer umatlas 223628144 Oct 10 21:40 ATLAS.root_0
[2025-10-11 09:13:50] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 21:40 start_atlas.sh
[2025-10-11 09:13:50] -rw-r--r--. 2 boincer umatlas    569681 Oct 10 21:40 input.tar.gz
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas 192609813 Oct 11 09:09 HITS.pool.root.1
[2025-10-11 09:13:50] -rw-------. 1 boincer umatlas   3072000 Oct 11 09:13 result.tar.gz
09:13:51 (2761596): run_atlas exited; CPU time 44137.507606
09:13:51 (2761596): called boinc_finish(0)

</stderr_txt>
]]>

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