Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
17:28:07 (16497): wrapper (7.7.26015): starting
17:28:07 (16497): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 17:28:07] Arguments: --nthreads 12
[2025-10-10 17:28:07] Threads: 12
[2025-10-10 17:28:07] Checking for CVMFS
[2025-10-10 17:28:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 17:28:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 17:28:07] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 17:28:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 17:28:07] 2.11.2.0 2914 220542 99000 151562 0 57 13269751 20275201 1 130560 1 106020852 99.983 13177859 12294 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 17:28:07] CVMFS is ok
[2025-10-10 17:28:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 17:28:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 17:28:07] Further information can be found at the LHC@home message board.
[2025-10-10 17:28:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 17:28:07] Checking for apptainer binary...
[2025-10-10 17:28:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 17:28:07] Running /usr/bin/apptainer --version
[2025-10-10 17:28:07] apptainer version 1.3.2-1.el7
[2025-10-10 17:28:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 17:28:08] c-205-5.aglt2.org
[2025-10-10 17:28:08] apptainer works
[2025-10-10 17:28:09] Set ATHENA_PROC_NUMBER=12
[2025-10-10 17:28:09] Set ATHENA_CORE_NUMBER=12
[2025-10-10 17:28:09] Starting ATLAS job with PandaID=6837595134
[2025-10-10 17:28:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 18:39:52]  *** The last 200 lines of the pilot log: ***
[2025-10-10 18:39:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 18:39:52]  replicas=None
[2025-10-10 18:39:52]  scope=mc23_13p6TeV
[2025-10-10 18:39:52]  status=None
[2025-10-10 18:39:52]  status_code=0
[2025-10-10 18:39:52]  storage_token=
[2025-10-10 18:39:52]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-6837595134/log.46676269._037056.job.log.tgz.1
[2025-10-10 18:39:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/c2/log.46676269._037056.job.log.tgz.1
[2025-10-10 18:39:52]  workdir=None
[2025-10-10 18:39:52] ]
[2025-10-10 18:39:52] 2025-10-10 22:39:14,835 | INFO     | transferring file log.46676269._037056.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-6837595134/log.46676269._037056.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 18:39:52] 2025-10-10 22:39:14,835 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6837595134/log.46676269._037056.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._037056.job
[2025-10-10 18:39:52] 2025-10-10 22:39:14,858 | INFO     | adding to output.list: log.46676269._037056.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6f/c2/log.46676269._037056.job.log.tg
[2025-10-10 18:39:52] 2025-10-10 22:39:14,859 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 18:39:52] 2025-10-10 22:39:14,860 | INFO     | summary of transferred files:
[2025-10-10 18:39:52] 2025-10-10 22:39:14,860 | INFO     |  -- lfn=log.46676269._037056.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 18:39:52] 2025-10-10 22:39:14,860 | INFO     | stage-out finished correctly
[2025-10-10 18:39:52] 2025-10-10 22:39:14,944 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 18:39:52] 2025-10-10 22:39:15,024 | INFO     | job 6837595134 has state=finished
[2025-10-10 18:39:52] 2025-10-10 22:39:15,024 | INFO     | preparing for final server update for job 6837595134 in state='finished'
[2025-10-10 18:39:52] 2025-10-10 22:39:15,025 | INFO     | this job has now completed (state=finished)
[2025-10-10 18:39:52] 2025-10-10 22:39:15,025 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 18:39:52] 2025-10-10 22:39:15,025 | INFO     | log transfer has been attempted: DONE
[2025-10-10 18:39:52] 2025-10-10 22:39:15,025 | INFO     | job 6837595134 has finished - writing final server update
[2025-10-10 18:39:52] 2025-10-10 22:39:15,026 | INFO     | total number of processed events: 400 (read)
[2025-10-10 18:39:52] 2025-10-10 22:39:15,026 | INFO     | executing command: lscpu
[2025-10-10 18:39:52] 2025-10-10 22:39:15,052 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 18:39:52] 2025-10-10 22:39:15,241 | INFO     | time since job start (4251s) is within the limit (172800.0s)
[2025-10-10 18:39:52] 2025-10-10 22:39:17,246 | INFO     | time since job start (4253s) is within the limit (172800.0s)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,161 | WARNING  | process 26530 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 18:39:52] 2025-10-10 22:39:19,161 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837595134/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,250 | INFO     | number of running child processes to parent process 26530: 1
[2025-10-10 18:39:52] 2025-10-10 22:39:19,250 | INFO     | maximum number of monitored processes: 6
[2025-10-10 18:39:52] 2025-10-10 22:39:19,251 | INFO     | time since job start (4255s) is within the limit (172800.0s)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,751 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 18:39:52] 2025-10-10 22:39:19,755 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1729.0833333333333
[2025-10-10 18:39:52] 2025-10-10 22:39:19,758 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837595134/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,758 | INFO     | extracted standard info from prmon json
[2025-10-10 18:39:52] 2025-10-10 22:39:19,759 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 18:39:52] 2025-10-10 22:39:19,759 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 18:39:52] 2025-10-10 22:39:19,759 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 18:39:52] 2025-10-10 22:39:19,759 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 18:39:52] 2025-10-10 22:39:19,761 | INFO     | fitting pss+swap vs Time
[2025-10-10 18:39:52] 2025-10-10 22:39:19,761 | INFO     | sum of square deviations: 77515872.0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,761 | INFO     | sum of deviations: -7547130571.999999
[2025-10-10 18:39:52] 2025-10-10 22:39:19,761 | INFO     | mean x: 1760133929.0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,762 | INFO     | mean y: 2829369.8253968256
[2025-10-10 18:39:52] 2025-10-10 22:39:19,762 | INFO     | -- intersect: 171373675670.44336
[2025-10-10 18:39:52] 2025-10-10 22:39:19,762 | INFO     | intersect: 171373675670.44336
[2025-10-10 18:39:52] 2025-10-10 22:39:19,762 | INFO     | chi2: 0.052177204478233645
[2025-10-10 18:39:52] 2025-10-10 22:39:19,762 | INFO     | -- intersect: 171373675670.44336
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | current memory leak: -97.36 B/s (using 63 data points, chi2=0.05)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | could have reported an average CPU frequency of 2058 MHz (6 samples)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | ..............................
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | . Timing measurements:
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | . get job = 0 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,763 | INFO     | . initial setup = 2 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | . payload setup = 7 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | . stage-in = 0 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | . payload execution = 4221 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | . stage-out = 0 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | . log creation = 0 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,764 | INFO     | ..............................
[2025-10-10 18:39:52] 2025-10-10 22:39:19,846 | INFO     | 
[2025-10-10 18:39:52] 2025-10-10 22:39:19,846 | INFO     | job summary report
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | --------------------------------------------------
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | PanDA job id: 6837595134
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | task id: 46676269
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | errors: (none)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 18:39:52] 2025-10-10 22:39:19,847 | INFO     | pilot state: finished 
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | transexitcode: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | exeerrorcode: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | exeerrordiag: 
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | exitcode: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | exitmsg: OK
[2025-10-10 18:39:52] 2025-10-10 22:39:19,848 | INFO     | cpuconsumptiontime: 45833 s
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | nevents: 400
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | neventsw: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | pid: 26530
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | pgrp: 26530
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | corecount: 12
[2025-10-10 18:39:52] 2025-10-10 22:39:19,849 | INFO     | event service: False
[2025-10-10 18:39:52] 2025-10-10 22:39:19,850 | INFO     | sizes: {0: 2348029, 1: 2348885, 6: 2349147, 12: 2349175, 4233: 2375071, 4235: 2384253, 4240: 2384391}
[2025-10-10 18:39:52] 2025-10-10 22:39:19,850 | INFO     | --------------------------------------------------
[2025-10-10 18:39:52] 2025-10-10 22:39:19,850 | INFO     | 
[2025-10-10 18:39:52] 2025-10-10 22:39:19,850 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 18:39:52] 2025-10-10 22:39:19,874 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,874 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,874 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,874 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,874 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,875 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,875 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,875 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,875 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,875 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,876 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,877 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,877 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,877 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,877 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 18:39:52] 2025-10-10 22:39:19,877 | INFO     | job 6837595134 has completed (purged errors)
[2025-10-10 18:39:52] 2025-10-10 22:39:19,878 | INFO     | overall cleanup function is called
[2025-10-10 18:39:52] 2025-10-10 22:39:20,885 | INFO     | --- collectZombieJob: --- 10, [26530]
[2025-10-10 18:39:52] 2025-10-10 22:39:20,886 | INFO     | zombie collector waiting for pid 26530
[2025-10-10 18:39:52] 2025-10-10 22:39:20,886 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 18:39:52] 2025-10-10 22:39:20,886 | INFO     | collected zombie processes
[2025-10-10 18:39:52] 2025-10-10 22:39:20,886 | INFO     | will attempt to kill all subprocesses of pid=26530
[2025-10-10 18:39:52] 2025-10-10 22:39:20,974 | INFO     | process IDs to be killed: [26530] (in reverse order)
[2025-10-10 18:39:52] 2025-10-10 22:39:21,026 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 18:39:52] 2025-10-10 22:39:21,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 18:39:52] 2025-10-10 22:39:21,030 | INFO     | did not find any defunct processes belonging to 26530
[2025-10-10 18:39:52] 2025-10-10 22:39:21,033 | INFO     | did not find any defunct processes belonging to 26530
[2025-10-10 18:39:52] 2025-10-10 22:39:21,033 | INFO     | ready for new job
[2025-10-10 18:39:52] 2025-10-10 22:39:21,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 18:39:52] 2025-10-10 22:39:21,035 | INFO     | ***************************************
[2025-10-10 18:39:52] 2025-10-10 22:39:21,035 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 18:39:52] 2025-10-10 22:39:21,035 | INFO     | ***************************************
[2025-10-10 18:39:52] 2025-10-10 22:39:21,035 | INFO     | 
[2025-10-10 18:39:52] 2025-10-10 22:39:21,036 | INFO     | architecture information:
[2025-10-10 18:39:52] 2025-10-10 22:39:21,036 | INFO     | executing command: cat /etc/os-release
[2025-10-10 18:39:52] 2025-10-10 22:39:21,051 | INFO     | cat /etc/os-release:
[2025-10-10 18:39:52] NAME="CentOS Linux"
[2025-10-10 18:39:52] VERSION="7 (Core)"
[2025-10-10 18:39:52] ID="centos"
[2025-10-10 18:39:52] ID_LIKE="rhel fedora"
[2025-10-10 18:39:52] VERSION_ID="7"
[2025-10-10 18:39:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 18:39:52] ANSI_COLOR="0;31"
[2025-10-10 18:39:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 18:39:52] HOME_URL="https://www.centos.org/"
[2025-10-10 18:39:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 18:39:52] 
[2025-10-10 18:39:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 18:39:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 18:39:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 18:39:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 18:39:52] 
[2025-10-10 18:39:52] 2025-10-10 22:39:21,052 | INFO     | ***************************************
[2025-10-10 18:39:52] 2025-10-10 22:39:21,555 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 18:39:52] 2025-10-10 22:39:21,572 | INFO     | sufficient remaining disk space (29364322304 B)
[2025-10-10 18:39:52] 2025-10-10 22:39:21,572 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 18:39:52] 2025-10-10 22:39:21,573 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 18:39:52] 2025-10-10 22:39:21,573 | INFO     | update_server=False
[2025-10-10 18:39:52] 2025-10-10 22:39:21,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 18:39:52] 2025-10-10 22:39:21,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 18:39:52] 2025-10-10 22:39:21,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 18:39:52] 2025-10-10 22:39:21,607 | INFO     | all job control threads have been joined
[2025-10-10 18:39:52] 2025-10-10 22:39:21,753 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 18:39:52] 2025-10-10 22:39:21,753 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 18:39:52] 2025-10-10 22:39:21,754 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 18:39:52] 2025-10-10 22:39:21,754 | INFO     | will abort loop
[2025-10-10 18:39:52] 2025-10-10 22:39:21,924 | INFO     | all data control threads have been joined
[2025-10-10 18:39:52] 2025-10-10 22:39:22,173 | INFO     | all payload control threads have been joined
[2025-10-10 18:39:52] 2025-10-10 22:39:22,575 | INFO     | [job] retrieve thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,579 | INFO     | [job] queue monitor thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,613 | INFO     | [job] control thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,641 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,726 | INFO     | [payload] failed_post thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,758 | INFO     | [job] job monitor thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,784 | INFO     | [data] copytool_in thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,930 | INFO     | [data] control thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:22,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 18:39:52] 2025-10-10 22:39:23,177 | INFO     | [payload] control thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:23,328 | INFO     | [payload] validate_post thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:23,475 | INFO     | [job] validate thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:23,701 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:24,051 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:24,957 | INFO     | [data] copytool_out thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:25,580 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:30,394 | INFO     | [monitor] cgroup control has ended
[2025-10-10 18:39:52] 2025-10-10 22:39:32,451 | INFO     | job.realtimelogging is not enabled
[2025-10-10 18:39:52] 2025-10-10 22:39:33,457 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 18:39:52] 2025-10-10 22:39:34,634 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139719355815744)>', '<ExcThread(monitor, started 139718700295936)>']
[2025-10-10 18:39:52] 2025-10-10 22:39:39,654 | INFO     | all workflow threads have been joined
[2025-10-10 18:39:52] 2025-10-10 22:39:39,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 18:39:52] 2025-10-10 22:39:39,655 | INFO     | traces error code: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:39,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 18:39:52] 2025-10-10 22:39:52,452 | INFO     | PID=20166 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 18:39:52] 2025-10-10 22:39:52,452 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 18:39:52] 2025-10-10 22:39:52,452 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 18:39:52] 2025-10-10 22:39:52,452 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 18:39:52] 2025-10-10 22:39:52,453 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 18:39:52] 2025-10-10 22:39:52,453 | INFO     | [monitor] control thread has ended
[2025-10-10 18:39:52] 2025-10-10 22:39:52,536 [wrapper] ==== pilot stdout END ====
[2025-10-10 18:39:52] 2025-10-10 22:39:52,540 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 18:39:52] 2025-10-10 22:39:52,543 [wrapper] pilotpid: 20166
[2025-10-10 18:39:52] 2025-10-10 22:39:52,547 [wrapper] Pilot exit status: 0
[2025-10-10 18:39:52] 2025-10-10 22:39:52,564 [wrapper] pandaids: 6837595134
[2025-10-10 18:39:52] 2025-10-10 22:39:52,604 [wrapper] cleanup supervisor_pilot  1659 20167
[2025-10-10 18:39:52] 2025-10-10 22:39:52,608 [wrapper] Test setup, not cleaning
[2025-10-10 18:39:52] 2025-10-10 22:39:52,613 [wrapper] apfmon messages muted
[2025-10-10 18:39:52] 2025-10-10 22:39:52,616 [wrapper] ==== wrapper stdout END ====
[2025-10-10 18:39:52] 2025-10-10 22:39:52,621 [wrapper] ==== wrapper stderr END ====
[2025-10-10 18:39:52]  *** Error codes and diagnostics ***
[2025-10-10 18:39:52]     "exeErrorCode": 0,
[2025-10-10 18:39:52]     "exeErrorDiag": "",
[2025-10-10 18:39:52]     "pilotErrorCode": 0,
[2025-10-10 18:39:52]     "pilotErrorDiag": "",
[2025-10-10 18:39:52]  *** Listing of results directory ***
[2025-10-10 18:39:52] total 408776
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas    557409 Oct 10 06:29 pilot3.tar.gz
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas      5112 Oct 10 06:38 queuedata.json
[2025-10-10 18:39:52] -rwx------ 1 boincer umatlas     36292 Oct 10 06:38 runpilot2-wrapper.sh
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas       100 Oct 10 17:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 18:39:52] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 17:28 run_atlas
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas       105 Oct 10 17:28 job.xml
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas 221883284 Oct 10 17:28 EVNT.46676267._001505.pool.root.1
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 17:28 start_atlas.sh
[2025-10-10 18:39:52] drwxrwx--x 2 boincer umatlas      4096 Oct 10 17:28 shared
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 17:28 input.tar.gz
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas         0 Oct 10 17:28 boinc_lockfile
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas      2550 Oct 10 17:28 pandaJob.out
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas    975517 Oct 10 17:28 agis_schedconf.cvmfs.json
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas   1560580 Oct 10 17:28 agis_ddmendpoints.agis.ALL.json
[2025-10-10 18:39:52] drwx------ 5 boincer umatlas      4096 Oct 10 17:28 pilot3
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas 190799003 Oct 10 18:38 HITS.46676269._037056.pool.root.1
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas      5952 Oct 10 18:38 init_data.xml
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas       530 Oct 10 18:38 boinc_task_state.xml
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas      1050 Oct 10 18:39 memory_monitor_summary.json
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas    387856 Oct 10 18:39 log.46676269._037056.job.log.tgz.1
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas      7854 Oct 10 18:39 heartbeat.json
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas        95 Oct 10 18:39 pilot_heartbeat.json
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 18:39 boinc_mmap_file
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas        27 Oct 10 18:39 wrapper_checkpoint.txt
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas       745 Oct 10 18:39 pilotlog.txt
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas    620022 Oct 10 18:39 log.46676269._037056.job.log.1
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas       357 Oct 10 18:39 output.list
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas       620 Oct 10 18:39 runtime_log
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas   1024000 Oct 10 18:39 result.tar.gz
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas      8700 Oct 10 18:39 runtime_log.err
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas       658 Oct 10 18:39 fhLLDmThPR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmF6cNDmJTfQYm.diag
[2025-10-10 18:39:52] -rw-r--r-- 1 boincer umatlas     21825 Oct 10 18:39 stderr.txt
[2025-10-10 18:39:52] HITS file was successfully produced:
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas 190799003 Oct 10 18:38 shared/HITS.pool.root.1
[2025-10-10 18:39:52]  *** Contents of shared directory: ***
[2025-10-10 18:39:52] total 404588
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas 221883284 Oct 10 17:28 ATLAS.root_0
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 17:28 start_atlas.sh
[2025-10-10 18:39:52] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 17:28 input.tar.gz
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas 190799003 Oct 10 18:38 HITS.pool.root.1
[2025-10-10 18:39:52] -rw------- 1 boincer umatlas   1024000 Oct 10 18:39 result.tar.gz
18:39:54 (16497): run_atlas exited; CPU time 45818.953005
18:39:54 (16497): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN