Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:50:35 (2468437): wrapper (7.7.26015): starting
07:50:35 (2468437): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 07:50:35] Arguments: --nthreads 3
[2025-10-11 07:50:35] Threads: 3
[2025-10-11 07:50:35] Checking for CVMFS
[2025-10-11 07:50:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 07:50:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 07:50:36] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 07:50:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 07:50:36] 2.9.2.0 1692675 2536 83272 151573 1 57 29146373 36864000 0 130560 0 2034974 99.991 84245 957 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 07:50:36] CVMFS is ok
[2025-10-11 07:50:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 07:50:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 07:50:36] Further information can be found at the LHC@home message board.
[2025-10-11 07:50:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 07:50:36] Checking for apptainer binary...
[2025-10-11 07:50:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 07:50:36] Running /usr/bin/apptainer --version
[2025-10-11 07:50:36] apptainer version 1.4.1-1.1
[2025-10-11 07:50:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 07:50:36] thA337a
[2025-10-11 07:50:36] apptainer works
[2025-10-11 07:50:36] Set ATHENA_PROC_NUMBER=3
[2025-10-11 07:50:36] Set ATHENA_CORE_NUMBER=3
[2025-10-11 07:50:36] Starting ATLAS job with PandaID=6837630053
[2025-10-11 07:50:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 09:15:54]  *** The last 200 lines of the pilot log: ***
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,623 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | job 6837630053 has completed (purged errors)
[2025-10-11 09:15:54] 2025-10-11 07:15:11,624 | INFO     | overall cleanup function is called
[2025-10-11 09:15:54] 2025-10-11 07:15:12,630 | INFO     | --- collectZombieJob: --- 10, [2478589]
[2025-10-11 09:15:54] 2025-10-11 07:15:12,631 | INFO     | zombie collector waiting for pid 2478589
[2025-10-11 09:15:54] 2025-10-11 07:15:12,631 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 09:15:54] 2025-10-11 07:15:12,631 | INFO     | collected zombie processes
[2025-10-11 09:15:54] 2025-10-11 07:15:12,631 | INFO     | will attempt to kill all subprocesses of pid=2478589
[2025-10-11 09:15:54] 2025-10-11 07:15:12,673 | INFO     | process IDs to be killed: [2478589] (in reverse order)
[2025-10-11 09:15:54] 2025-10-11 07:15:12,698 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 09:15:54] 2025-10-11 07:15:12,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 09:15:54] 2025-10-11 07:15:12,699 | INFO     | did not find any defunct processes belonging to 2478589
[2025-10-11 09:15:54] 2025-10-11 07:15:12,700 | INFO     | did not find any defunct processes belonging to 2478589
[2025-10-11 09:15:54] 2025-10-11 07:15:12,700 | INFO     | ready for new job
[2025-10-11 09:15:54] 2025-10-11 07:15:12,700 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 09:15:54] 2025-10-11 07:15:12,701 | INFO     | ***************************************
[2025-10-11 09:15:54] 2025-10-11 07:15:12,701 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 09:15:54] 2025-10-11 07:15:12,701 | INFO     | ***************************************
[2025-10-11 09:15:54] 2025-10-11 07:15:12,701 | INFO     | 
[2025-10-11 09:15:54] 2025-10-11 07:15:12,701 | INFO     | architecture information:
[2025-10-11 09:15:54] 2025-10-11 07:15:12,702 | INFO     | executing command: cat /etc/os-release
[2025-10-11 09:15:54] 2025-10-11 07:15:12,711 | INFO     | cat /etc/os-release:
[2025-10-11 09:15:54] NAME="CentOS Linux"
[2025-10-11 09:15:54] VERSION="7 (Core)"
[2025-10-11 09:15:54] ID="centos"
[2025-10-11 09:15:54] ID_LIKE="rhel fedora"
[2025-10-11 09:15:54] VERSION_ID="7"
[2025-10-11 09:15:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 09:15:54] ANSI_COLOR="0;31"
[2025-10-11 09:15:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 09:15:54] HOME_URL="https://www.centos.org/"
[2025-10-11 09:15:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 09:15:54] 
[2025-10-11 09:15:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 09:15:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 09:15:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 09:15:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 09:15:54] 
[2025-10-11 09:15:54] 2025-10-11 07:15:12,711 | INFO     | ***************************************
[2025-10-11 09:15:54] 2025-10-11 07:15:13,214 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | INFO     | sufficient remaining disk space (375753015296 B)
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | INFO     | update_server=False
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 09:15:54] 2025-10-11 07:15:13,227 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 09:15:54] 2025-10-11 07:15:13,228 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 09:15:54] 2025-10-11 07:15:13,228 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 09:15:54] 2025-10-11 07:15:13,228 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:15:54] 2025-10-11 07:15:13,228 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 09:15:54] 2025-10-11 07:15:13,269 | INFO     | all payload control threads have been joined
[2025-10-11 09:15:54] 2025-10-11 07:15:13,489 | INFO     | all data control threads have been joined
[2025-10-11 09:15:54] 2025-10-11 07:15:14,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 09:15:54] 2025-10-11 07:15:14,184 | INFO     | aborting loop
[2025-10-11 09:15:54] 2025-10-11 07:15:14,233 | INFO     | [job] retrieve thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,233 | INFO     | [job] queue monitor thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,274 | INFO     | [payload] control thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,477 | INFO     | [data] copytool_in thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,494 | INFO     | [data] control thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,545 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,584 | INFO     | [payload] validate_post thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,666 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 09:15:54] 2025-10-11 07:15:14,733 | INFO     | [job] validate thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,737 | INFO     | all job control threads have been joined
[2025-10-11 09:15:54] 2025-10-11 07:15:14,813 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:14,825 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:15,048 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:15,154 | INFO     | [payload] failed_post thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:15,185 | INFO     | [job] job monitor thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:15,743 | INFO     | [job] control thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:16,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 09:15:54] 2025-10-11 07:15:16,672 | INFO     | [data] copytool_out thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:20,222 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 09:15:54] 2025-10-11 07:15:48,123 | INFO     | [monitor] cgroup control has ended
[2025-10-11 09:15:54] 2025-10-11 07:15:49,553 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140229217982272)>', '<ExcThread(monitor, started 140228702484224)>']
[2025-10-11 09:15:54] 2025-10-11 07:15:50,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 09:15:54] 2025-10-11 07:15:50,424 | INFO     | [monitor] control thread has ended
[2025-10-11 09:15:54] 2025-10-11 07:15:54,579 | INFO     | all workflow threads have been joined
[2025-10-11 09:15:54] 2025-10-11 07:15:54,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 09:15:54] 2025-10-11 07:15:54,580 | INFO     | traces error code: 0
[2025-10-11 09:15:54] 2025-10-11 07:15:54,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 09:15:54] 2025-10-11 07:15:54,631 [wrapper] ==== pilot stdout END ====
[2025-10-11 09:15:54] 2025-10-11 07:15:54,633 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 09:15:54] 2025-10-11 07:15:54,636 [wrapper] pilotpid: 2472153
[2025-10-11 09:15:54] 2025-10-11 07:15:54,638 [wrapper] Pilot exit status: 0
[2025-10-11 09:15:54] 2025-10-11 07:15:54,646 [wrapper] pandaids: 6837630053
[2025-10-11 09:15:54] 2025-10-11 07:15:54,664 [wrapper] cleanup supervisor_pilot 2490661 2472154
[2025-10-11 09:15:54] 2025-10-11 07:15:54,666 [wrapper] Test setup, not cleaning
[2025-10-11 09:15:54] 2025-10-11 07:15:54,669 [wrapper] apfmon messages muted
[2025-10-11 09:15:54] 2025-10-11 07:15:54,671 [wrapper] ==== wrapper stdout END ====
[2025-10-11 09:15:54] 2025-10-11 07:15:54,674 [wrapper] ==== wrapper stderr END ====
[2025-10-11 09:15:54]  *** Error codes and diagnostics ***
[2025-10-11 09:15:54]     "exeErrorCode": 0,
[2025-10-11 09:15:54]     "exeErrorDiag": "",
[2025-10-11 09:15:54]     "pilotErrorCode": 0,
[2025-10-11 09:15:54]     "pilotErrorDiag": "",
[2025-10-11 09:15:54]  *** Listing of results directory ***
[2025-10-11 09:15:54] total 418072
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc    557409 Oct 10 14:46 pilot3.tar.gz
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc      5112 Oct 10 15:00 queuedata.json
[2025-10-11 09:15:54] -rwx------ 1 boinc boinc     36292 Oct 10 15:01 runpilot2-wrapper.sh
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc       100 Oct 11 07:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 09:15:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 07:50 run_atlas
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc       105 Oct 11 07:50 job.xml
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc 219337121 Oct 11 07:50 EVNT.46676267._001571.pool.root.1
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc    569680 Oct 11 07:50 input.tar.gz
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc     15120 Oct 11 07:50 start_atlas.sh
[2025-10-11 09:15:54] drwxrwx--x 2 boinc boinc      4096 Oct 11 07:50 shared
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc         0 Oct 11 07:50 boinc_setup_complete
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc      6447 Oct 11 07:50 init_data.xml
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc         0 Oct 11 07:50 boinc_lockfile
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc      2550 Oct 11 07:50 pandaJob.out
[2025-10-11 09:15:54] -rw------- 1 boinc boinc    975533 Oct 11 07:50 agis_schedconf.cvmfs.json
[2025-10-11 09:15:54] -rw------- 1 boinc boinc   1560580 Oct 11 07:50 agis_ddmendpoints.agis.ALL.json
[2025-10-11 09:15:54] drwx------ 5 boinc boinc      4096 Oct 11 07:50 pilot3
[2025-10-11 09:15:54] -rw------- 1 boinc boinc 202864218 Oct 11 09:14 HITS.46676269._038710.pool.root.1
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc       529 Oct 11 09:14 boinc_task_state.xml
[2025-10-11 09:15:54] -rw------- 1 boinc boinc      1017 Oct 11 09:14 memory_monitor_summary.json
[2025-10-11 09:15:54] -rw------- 1 boinc boinc    257127 Oct 11 09:14 log.46676269._038710.job.log.tgz.1
[2025-10-11 09:15:54] -rw------- 1 boinc boinc        95 Oct 11 09:15 pilot_heartbeat.json
[2025-10-11 09:15:54] -rw------- 1 boinc boinc      7751 Oct 11 09:15 heartbeat.json
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc      8192 Oct 11 09:15 boinc_mmap_file
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc        27 Oct 11 09:15 wrapper_checkpoint.txt
[2025-10-11 09:15:54] -rw------- 1 boinc boinc      4556 Oct 11 09:15 pilotlog.txt
[2025-10-11 09:15:54] -rw------- 1 boinc boinc    743861 Oct 11 09:15 log.46676269._038710.job.log.1
[2025-10-11 09:15:54] -rw------- 1 boinc boinc       357 Oct 11 09:15 output.list
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc       620 Oct 11 09:15 runtime_log
[2025-10-11 09:15:54] -rw------- 1 boinc boinc   1024000 Oct 11 09:15 result.tar.gz
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc      8782 Oct 11 09:15 runtime_log.err
[2025-10-11 09:15:54] -rw------- 1 boinc boinc       659 Oct 11 09:15 lswLDmOvRR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmTMdNDmm7D9gn.diag
[2025-10-11 09:15:54] -rw-r--r-- 1 boinc boinc     12373 Oct 11 09:15 stderr.txt
[2025-10-11 09:15:54] HITS file was successfully produced:
[2025-10-11 09:15:54] -rw------- 1 boinc boinc 202864218 Oct 11 09:14 shared/HITS.pool.root.1
[2025-10-11 09:15:54]  *** Contents of shared directory: ***
[2025-10-11 09:15:54] total 413896
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc 219337121 Oct 11 07:50 ATLAS.root_0
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc    569680 Oct 11 07:50 input.tar.gz
[2025-10-11 09:15:54] -rw-r--r-- 2 boinc boinc     15120 Oct 11 07:50 start_atlas.sh
[2025-10-11 09:15:54] -rw------- 1 boinc boinc 202864218 Oct 11 09:14 HITS.pool.root.1
[2025-10-11 09:15:54] -rw------- 1 boinc boinc   1024000 Oct 11 09:15 result.tar.gz
09:15:56 (2468437): run_atlas exited; CPU time 14503.879363
09:15:56 (2468437): called boinc_finish(0)

</stderr_txt>
]]>

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