Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
22:22:58 (888173): wrapper (7.7.26015): starting
22:22:58 (888173): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 22:22:58] Arguments: --nthreads 12
[2025-10-10 22:22:58] Threads: 12
[2025-10-10 22:22:58] Checking for CVMFS
[2025-10-10 22:22:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 22:22:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 22:22:58] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 22:22:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 22:22:58] 2.13.2.0 3843265 2418 58716 151571 3 57 3108944 6144001 3668 130560 0 14430459 99.998 205404 540 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 22:22:58] CVMFS is ok
[2025-10-10 22:22:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 22:22:58] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 22:22:58] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 22:22:58] Further information can be found at the LHC@home message board.
[2025-10-10 22:22:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 22:22:58] Checking for apptainer binary...
[2025-10-10 22:22:58] apptainer is not installed, using version from CVMFS
[2025-10-10 22:22:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 22:23:00] XeonFire
[2025-10-10 22:23:00] apptainer works
[2025-10-10 22:23:00] Set ATHENA_PROC_NUMBER=12
[2025-10-10 22:23:00] Set ATHENA_CORE_NUMBER=12
[2025-10-10 22:23:00] Starting ATLAS job with PandaID=6837630282
[2025-10-10 22:23:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 23:16:40]  *** The last 200 lines of the pilot log: ***
[2025-10-10 23:16:40]  status_code=0
[2025-10-10 23:16:40]  storage_token=
[2025-10-10 23:16:40]  surl=/var/lib/boinc-client/slots/4/PanDA_Pilot-6837630282/log.46676269._038922.job.log.tgz.1
[2025-10-10 23:16:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/67/log.46676269._038922.job.log.tgz.1
[2025-10-10 23:16:40]  workdir=None
[2025-10-10 23:16:40] ]
[2025-10-10 23:16:40] 2025-10-11 04:15:24,707 | INFO     | transferring file log.46676269._038922.job.log.tgz.1 from /var/lib/boinc-client/slots/4/PanDA_Pilot-6837630282/log.46676269._038922.job.log.tgz.1 to /var/lib/boinc
[2025-10-10 23:16:40] 2025-10-11 04:15:24,707 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/4/PanDA_Pilot-6837630282/log.46676269._038922.job.log.tgz.1 /var/lib/boinc-client/slots/4/log.466762
[2025-10-10 23:16:40] 2025-10-11 04:15:24,724 | INFO     | adding to output.list: log.46676269._038922.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/41/67/log.46676269._038922.job.log.tg
[2025-10-10 23:16:40] 2025-10-11 04:15:24,725 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 23:16:40] 2025-10-11 04:15:24,725 | INFO     | summary of transferred files:
[2025-10-10 23:16:40] 2025-10-11 04:15:24,725 | INFO     |  -- lfn=log.46676269._038922.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 23:16:40] 2025-10-11 04:15:24,725 | INFO     | stage-out finished correctly
[2025-10-10 23:16:40] 2025-10-11 04:15:25,065 | INFO     | PID=892243 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 23:16:40] 2025-10-11 04:15:25,065 | INFO     | .. there are 5 such processes running
[2025-10-10 23:16:40] 2025-10-11 04:15:25,962 | INFO     | monitor loop #231: job 0:6837630282 is in state 'finished'
[2025-10-10 23:16:40] 2025-10-11 04:15:25,963 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:16:40] 2025-10-11 04:15:26,066 | INFO     | time since job start (3117s) is within the limit (172800.0s)
[2025-10-10 23:16:40] 2025-10-11 04:15:27,210 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 23:16:40] 2025-10-11 04:15:27,722 | INFO     | job 6837630282 has state=finished
[2025-10-10 23:16:40] 2025-10-11 04:15:27,722 | INFO     | preparing for final server update for job 6837630282 in state='finished'
[2025-10-10 23:16:40] 2025-10-11 04:15:27,723 | INFO     | this job has now completed (state=finished)
[2025-10-10 23:16:40] 2025-10-11 04:15:27,723 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 23:16:40] 2025-10-11 04:15:27,723 | INFO     | log transfer has been attempted: DONE
[2025-10-10 23:16:40] 2025-10-11 04:15:27,723 | INFO     | job 6837630282 has finished - writing final server update
[2025-10-10 23:16:40] 2025-10-11 04:15:27,723 | INFO     | total number of processed events: 400 (read)
[2025-10-10 23:16:40] 2025-10-11 04:15:27,726 | INFO     | executing command: lscpu
[2025-10-10 23:16:40] 2025-10-11 04:15:27,772 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 23:16:40] 2025-10-11 04:15:28,072 | INFO     | time since job start (3119s) is within the limit (172800.0s)
[2025-10-10 23:16:40] 2025-10-11 04:15:28,466 | INFO     | monitor loop #232: job 0:6837630282 is in state 'finished'
[2025-10-10 23:16:40] 2025-10-11 04:15:28,466 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:16:40] 2025-10-11 04:15:30,078 | INFO     | time since job start (3121s) is within the limit (172800.0s)
[2025-10-10 23:16:40] 2025-10-11 04:15:30,969 | INFO     | monitor loop #233: job 0:6837630282 is in state 'finished'
[2025-10-10 23:16:40] 2025-10-11 04:15:30,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,037 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 23:16:40] 2025-10-11 04:15:32,053 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2331.842477272727
[2025-10-10 23:16:40] 2025-10-11 04:15:32,071 | INFO     | using path: /var/lib/boinc-client/slots/4/PanDA_Pilot-6837630282/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,072 | INFO     | extracted standard info from prmon json
[2025-10-10 23:16:40] 2025-10-11 04:15:32,073 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 23:16:40] 2025-10-11 04:15:32,073 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 23:16:40] 2025-10-11 04:15:32,073 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 23:16:40] 2025-10-11 04:15:32,073 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 23:16:40] 2025-10-11 04:15:32,075 | INFO     | fitting pss+swap vs Time
[2025-10-10 23:16:40] 2025-10-11 04:15:32,076 | INFO     | sum of square deviations: 26400495.0
[2025-10-10 23:16:40] 2025-10-11 04:15:32,076 | INFO     | sum of deviations: -762781789.4999998
[2025-10-10 23:16:40] 2025-10-11 04:15:32,076 | INFO     | mean x: 1760154655.5
[2025-10-10 23:16:40] 2025-10-11 04:15:32,076 | INFO     | mean y: 2803766.3863636362
[2025-10-10 23:16:40] 2025-10-11 04:15:32,077 | INFO     | -- intersect: 50858438023.20789
[2025-10-10 23:16:40] 2025-10-11 04:15:32,077 | INFO     | intersect: 50858438023.20789
[2025-10-10 23:16:40] 2025-10-11 04:15:32,077 | INFO     | chi2: 0.0058078427961320974
[2025-10-10 23:16:40] 2025-10-11 04:15:32,077 | INFO     | -- intersect: 50858438023.20789
[2025-10-10 23:16:40] 2025-10-11 04:15:32,077 | INFO     | current memory leak: -28.89 B/s (using 44 data points, chi2=0.01)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | ..............................
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | . Timing measurements:
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | . get job = 0 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | . initial setup = 17 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | . payload setup = 8 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,078 | INFO     | . stage-in = 0 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,079 | INFO     | . payload execution = 3087 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,079 | INFO     | . stage-out = 0 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,079 | INFO     | . log creation = 0 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,079 | INFO     | ..............................
[2025-10-10 23:16:40] 2025-10-11 04:15:32,088 | INFO     | time since job start (3123s) is within the limit (172800.0s)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | 
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | job summary report
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | --------------------------------------------------
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | PanDA job id: 6837630282
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | task id: 46676269
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | errors: (none)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | pilot state: finished 
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | transexitcode: 0
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | exeerrorcode: 0
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | exeerrordiag: 
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | exitcode: 0
[2025-10-10 23:16:40] 2025-10-11 04:15:32,166 | INFO     | exitmsg: OK
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | cpuconsumptiontime: 32349 s
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | nevents: 400
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | neventsw: 0
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | pid: 899294
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | pgrp: 899294
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | corecount: 12
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | event service: False
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | sizes: {0: 2348635, 1: 2348890, 6: 2349152, 12: 2349180, 3099: 2374462, 3100: 2383474, 3102: 2383658, 3107: 2383884}
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | --------------------------------------------------
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | 
[2025-10-10 23:16:40] 2025-10-11 04:15:32,167 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/4
[2025-10-10 23:16:40] 2025-10-11 04:15:32,185 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,186 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,187 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,188 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,188 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,188 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 23:16:40] 2025-10-11 04:15:32,188 | INFO     | job 6837630282 has completed (purged errors)
[2025-10-10 23:16:40] 2025-10-11 04:15:32,188 | INFO     | overall cleanup function is called
[2025-10-10 23:16:40] 2025-10-11 04:15:33,197 | INFO     | --- collectZombieJob: --- 10, [899294]
[2025-10-10 23:16:40] 2025-10-11 04:15:33,197 | INFO     | zombie collector waiting for pid 899294
[2025-10-10 23:16:40] 2025-10-11 04:15:33,198 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 23:16:40] 2025-10-11 04:15:33,198 | INFO     | collected zombie processes
[2025-10-10 23:16:40] 2025-10-11 04:15:33,198 | INFO     | will attempt to kill all subprocesses of pid=899294
[2025-10-10 23:16:40] 2025-10-11 04:15:33,487 | INFO     | process IDs to be killed: [899294] (in reverse order)
[2025-10-10 23:16:40] 2025-10-11 04:15:33,568 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 23:16:40] 2025-10-11 04:15:33,568 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 23:16:40] 2025-10-11 04:15:33,574 | INFO     | did not find any defunct processes belonging to 899294
[2025-10-10 23:16:40] 2025-10-11 04:15:33,578 | INFO     | did not find any defunct processes belonging to 899294
[2025-10-10 23:16:40] 2025-10-11 04:15:33,579 | INFO     | ready for new job
[2025-10-10 23:16:40] 2025-10-11 04:15:33,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 23:16:40] 2025-10-11 04:15:33,580 | INFO     | ***************************************
[2025-10-10 23:16:40] 2025-10-11 04:15:33,580 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 23:16:40] 2025-10-11 04:15:33,580 | INFO     | ***************************************
[2025-10-10 23:16:40] 2025-10-11 04:15:33,580 | INFO     | 
[2025-10-10 23:16:40] 2025-10-11 04:15:33,582 | INFO     | architecture information:
[2025-10-10 23:16:40] 2025-10-11 04:15:33,583 | INFO     | executing command: cat /etc/os-release
[2025-10-10 23:16:40] 2025-10-11 04:15:33,594 | INFO     | cat /etc/os-release:
[2025-10-10 23:16:40] NAME="CentOS Linux"
[2025-10-10 23:16:40] VERSION="7 (Core)"
[2025-10-10 23:16:40] ID="centos"
[2025-10-10 23:16:40] ID_LIKE="rhel fedora"
[2025-10-10 23:16:40] VERSION_ID="7"
[2025-10-10 23:16:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 23:16:40] ANSI_COLOR="0;31"
[2025-10-10 23:16:40] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 23:16:40] HOME_URL="https://www.centos.org/"
[2025-10-10 23:16:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 23:16:40] 
[2025-10-10 23:16:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 23:16:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 23:16:40] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 23:16:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 23:16:40] 
[2025-10-10 23:16:40] 2025-10-11 04:15:33,594 | INFO     | ***************************************
[2025-10-10 23:16:40] 2025-10-11 04:15:34,096 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/4
[2025-10-10 23:16:40] 2025-10-11 04:15:34,113 | INFO     | sufficient remaining disk space (1817612124160 B)
[2025-10-10 23:16:40] 2025-10-11 04:15:34,114 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 23:16:40] 2025-10-11 04:15:34,114 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 23:16:40] 2025-10-11 04:15:34,114 | INFO     | update_server=False
[2025-10-10 23:16:40] 2025-10-11 04:15:34,114 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 23:16:40] 2025-10-11 04:15:34,114 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:16:40] 2025-10-11 04:15:34,115 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 23:16:40] 2025-10-11 04:15:34,477 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 23:16:40] 2025-10-11 04:15:34,478 | INFO     | aborting loop
[2025-10-10 23:16:40] 2025-10-11 04:15:34,726 | INFO     | all payload control threads have been joined
[2025-10-10 23:16:40] 2025-10-11 04:15:35,117 | INFO     | all data control threads have been joined
[2025-10-10 23:16:40] 2025-10-11 04:15:35,119 | INFO     | [job] queue monitor thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,120 | INFO     | [job] retrieve thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 23:16:40] 2025-10-11 04:15:35,483 | INFO     | [job] job monitor thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,499 | INFO     | [payload] failed_post thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,555 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,649 | INFO     | all job control threads have been joined
[2025-10-10 23:16:40] 2025-10-11 04:15:35,672 | INFO     | [job] validate thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,731 | INFO     | [payload] control thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:35,970 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:36,107 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:36,122 | INFO     | [data] control thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:36,383 | INFO     | [payload] validate_post thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:36,574 | INFO     | [data] copytool_in thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:36,654 | INFO     | [job] control thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:37,300 | INFO     | [data] copytool_out thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:38,120 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:15:44,899 | INFO     | job.realtimelogging is not enabled
[2025-10-10 23:16:40] 2025-10-11 04:15:45,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 23:16:40] 2025-10-11 04:16:05,674 | INFO     | PID=892243 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 23:16:40] 2025-10-11 04:16:05,674 | INFO     | .. there are 5 such processes running
[2025-10-10 23:16:40] 2025-10-11 04:16:05,674 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 23:16:40] 2025-10-11 04:16:05,674 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 23:16:40] 2025-10-11 04:16:05,675 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 23:16:40] 2025-10-11 04:16:33,009 | INFO     | [monitor] cgroup control has ended
[2025-10-10 23:16:40] 2025-10-11 04:16:34,691 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129651928852288)>', '<ExcThread(monitor, started 129651531818752)>']
[2025-10-10 23:16:40] 2025-10-11 04:16:34,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 23:16:40] 2025-10-11 04:16:34,808 | INFO     | [monitor] control thread has ended
[2025-10-10 23:16:40] 2025-10-11 04:16:39,717 | INFO     | all workflow threads have been joined
[2025-10-10 23:16:40] 2025-10-11 04:16:39,717 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 23:16:40] 2025-10-11 04:16:39,718 | INFO     | traces error code: 0
[2025-10-10 23:16:40] 2025-10-11 04:16:39,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 23:16:40] 2025-10-11 04:16:39,833 [wrapper] ==== pilot stdout END ====
[2025-10-10 23:16:40] 2025-10-11 04:16:39,837 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 23:16:40] 2025-10-11 04:16:39,840 [wrapper] pilotpid: 892243
[2025-10-10 23:16:40] 2025-10-11 04:16:39,843 [wrapper] Pilot exit status: 0
[2025-10-10 23:16:40] 2025-10-11 04:16:39,855 [wrapper] pandaids: 6837630282
[2025-10-10 23:16:40] 2025-10-11 04:16:39,927 [wrapper] cleanup supervisor_pilot  983815 892244
[2025-10-10 23:16:40] 2025-10-11 04:16:39,930 [wrapper] Test setup, not cleaning
[2025-10-10 23:16:40] 2025-10-11 04:16:39,933 [wrapper] apfmon messages muted
[2025-10-10 23:16:40] 2025-10-11 04:16:39,936 [wrapper] ==== wrapper stdout END ====
[2025-10-10 23:16:40] 2025-10-11 04:16:39,939 [wrapper] ==== wrapper stderr END ====
[2025-10-10 23:16:40]  *** Error codes and diagnostics ***
[2025-10-10 23:16:40]     "exeErrorCode": 0,
[2025-10-10 23:16:40]     "exeErrorDiag": "",
[2025-10-10 23:16:40]     "pilotErrorCode": 0,
[2025-10-10 23:16:40]     "pilotErrorDiag": "",
[2025-10-10 23:16:40]  *** Listing of results directory ***
[2025-10-10 23:16:40] total 399588
[2025-10-10 23:16:40] -rw-r--r-- 1 mark mark    557409 Oct 10 08:04 pilot3.tar.gz
[2025-10-10 23:16:40] -rwx------ 1 mark mark     36292 Oct 10 08:10 runpilot2-wrapper.sh
[2025-10-10 23:16:40] -rw-r--r-- 1 mark mark      5112 Oct 10 08:10 queuedata.json
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark       100 Oct 10 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 23:16:40] -rwxr-xr-x 1 mark mark      7986 Oct 10 22:22 run_atlas
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark       105 Oct 10 22:22 job.xml
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark 218974425 Oct 10 22:22 EVNT.46676267._001580.pool.root.1
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark     15120 Oct 10 22:22 start_atlas.sh
[2025-10-10 23:16:40] drwxrwx--x 2 mark mark      4096 Oct 10 22:22 shared
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark    569677 Oct 10 22:22 input.tar.gz
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark      9229 Oct 10 22:22 init_data.xml
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark         0 Oct 10 22:22 boinc_setup_complete
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark         0 Oct 10 22:22 boinc_lockfile
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark      2549 Oct 10 22:23 pandaJob.out
[2025-10-10 23:16:40] -rw------- 1 mark mark    975509 Oct 10 22:23 agis_schedconf.cvmfs.json
[2025-10-10 23:16:40] -rw------- 1 mark mark   1560580 Oct 10 22:23 agis_ddmendpoints.agis.ALL.json
[2025-10-10 23:16:40] drwx------ 5 mark mark      4096 Oct 10 22:23 pilot3
[2025-10-10 23:16:40] -rw------- 1 mark mark 184634774 Oct 10 23:14 HITS.46676269._038922.pool.root.1
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark       529 Oct 10 23:14 boinc_task_state.xml
[2025-10-10 23:16:40] -rw------- 1 mark mark      1032 Oct 10 23:15 memory_monitor_summary.json
[2025-10-10 23:16:40] -rw------- 1 mark mark    350858 Oct 10 23:15 log.46676269._038922.job.log.tgz.1
[2025-10-10 23:16:40] -rw------- 1 mark mark        95 Oct 10 23:15 pilot_heartbeat.json
[2025-10-10 23:16:40] -rw------- 1 mark mark      7782 Oct 10 23:15 heartbeat.json
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark        27 Oct 10 23:16 wrapper_checkpoint.txt
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark      8192 Oct 10 23:16 boinc_mmap_file
[2025-10-10 23:16:40] -rw------- 1 mark mark      4903 Oct 10 23:16 pilotlog.txt
[2025-10-10 23:16:40] -rw------- 1 mark mark    475276 Oct 10 23:16 log.46676269._038922.job.log.1
[2025-10-10 23:16:40] -rw------- 1 mark mark       357 Oct 10 23:16 output.list
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark       620 Oct 10 23:16 runtime_log
[2025-10-10 23:16:40] -rw------- 1 mark mark    849920 Oct 10 23:16 result.tar.gz
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark      8759 Oct 10 23:16 runtime_log.err
[2025-10-10 23:16:40] -rw------- 1 mark mark       645 Oct 10 23:16 C5CLDmN4RR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4PdNDmwXZhyn.diag
[2025-10-10 23:16:40] -rw-rw-r-- 1 mark mark     22269 Oct 10 23:16 stderr.txt
[2025-10-10 23:16:40] HITS file was successfully produced:
[2025-10-10 23:16:40] -rw------- 1 mark mark 184634774 Oct 10 23:14 shared/HITS.pool.root.1
[2025-10-10 23:16:40]  *** Contents of shared directory: ***
[2025-10-10 23:16:40] total 395568
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark 218974425 Oct 10 22:22 ATLAS.root_0
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark     15120 Oct 10 22:22 start_atlas.sh
[2025-10-10 23:16:40] -rw-r--r-- 2 mark mark    569677 Oct 10 22:22 input.tar.gz
[2025-10-10 23:16:40] -rw------- 1 mark mark 184634774 Oct 10 23:14 HITS.pool.root.1
[2025-10-10 23:16:40] -rw------- 1 mark mark    849920 Oct 10 23:16 result.tar.gz
23:16:41 (888173): run_atlas exited; CPU time 32466.994148
23:16:41 (888173): called boinc_finish(0)

</stderr_txt>
]]>

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