Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:49:27 (1636246): wrapper (7.7.26015): starting
06:49:27 (1636246): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 06:49:27] Arguments: --nthreads 12
[2025-10-11 06:49:27] Threads: 12
[2025-10-11 06:49:27] Checking for CVMFS
[2025-10-11 06:49:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 06:49:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 06:49:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 06:49:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 06:49:28] 2.13.2.0 8715 27149 231324 151572 1 291 39587457 46080000 24316 130560 0 179342479 99.878 55907761 21575 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-10-11 06:49:28] CVMFS is ok
[2025-10-11 06:49:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 06:49:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 06:49:28] Further information can be found at the LHC@home message board.
[2025-10-11 06:49:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 06:49:28] Checking for apptainer binary...
[2025-10-11 06:49:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 06:49:28] Running /usr/bin/apptainer --version
[2025-10-11 06:49:28] apptainer version 1.4.2-1.el9
[2025-10-11 06:49:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 06:49:28] mff2104.farm.particle.cz
[2025-10-11 06:49:28] apptainer works
[2025-10-11 06:49:28] Set ATHENA_PROC_NUMBER=12
[2025-10-11 06:49:28] Set ATHENA_CORE_NUMBER=12
[2025-10-11 06:49:28] Starting ATLAS job with PandaID=6837629199
[2025-10-11 06:49:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:06:12]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:06:13] 2025-10-11 06:05:28,506 | INFO     | time since job start (4551s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:28,518 | INFO     | adding to output.list: log.46676269._038410.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/57/4d/log.46676269._038410.job.log.tg
[2025-10-11 08:06:13] 2025-10-11 06:05:28,518 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-11 08:06:13] 2025-10-11 06:05:28,519 | INFO     | summary of transferred files:
[2025-10-11 08:06:13] 2025-10-11 06:05:28,519 | INFO     |  -- lfn=log.46676269._038410.job.log.tgz.1, status_code=0, status=transferred
[2025-10-11 08:06:13] 2025-10-11 06:05:28,519 | INFO     | stage-out finished correctly
[2025-10-11 08:06:13] 2025-10-11 06:05:28,833 | WARNING  | process 1652101 can no longer be monitored (due to stat problems) - aborting
[2025-10-11 08:06:13] 2025-10-11 06:05:28,873 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6837629199/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:06:13] 2025-10-11 06:05:29,279 | INFO     | number of running child processes to parent process 1652101: 1
[2025-10-11 08:06:13] 2025-10-11 06:05:29,280 | INFO     | maximum number of monitored processes: 6
[2025-10-11 08:06:13] 2025-10-11 06:05:30,515 | INFO     | time since job start (4553s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:31,603 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-11 08:06:13] 2025-10-11 06:05:31,782 | INFO     | monitor loop #308: job 0:6837629199 is in state 'finished'
[2025-10-11 08:06:13] 2025-10-11 06:05:31,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:06:13] 2025-10-11 06:05:32,520 | INFO     | time since job start (4555s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:34,112 | INFO     | job 6837629199 has state=finished
[2025-10-11 08:06:13] 2025-10-11 06:05:34,113 | INFO     | preparing for final server update for job 6837629199 in state='finished'
[2025-10-11 08:06:13] 2025-10-11 06:05:34,113 | INFO     | this job has now completed (state=finished)
[2025-10-11 08:06:13] 2025-10-11 06:05:34,113 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-11 08:06:13] 2025-10-11 06:05:34,114 | INFO     | log transfer has been attempted: DONE
[2025-10-11 08:06:13] 2025-10-11 06:05:34,114 | INFO     | job 6837629199 has finished - writing final server update
[2025-10-11 08:06:13] 2025-10-11 06:05:34,114 | INFO     | total number of processed events: 400 (read)
[2025-10-11 08:06:13] 2025-10-11 06:05:34,114 | INFO     | executing command: lscpu
[2025-10-11 08:06:13] 2025-10-11 06:05:34,198 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-11 08:06:13] 2025-10-11 06:05:34,285 | INFO     | monitor loop #309: job 0:6837629199 is in state 'finished'
[2025-10-11 08:06:13] 2025-10-11 06:05:34,286 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:06:13] 2025-10-11 06:05:34,526 | INFO     | time since job start (4557s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:36,042 | INFO     | PID=1640488 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-11 08:06:13] 2025-10-11 06:05:36,043 | INFO     | .. there are 24 such processes running
[2025-10-11 08:06:13] 2025-10-11 06:05:36,788 | INFO     | monitor loop #310: job 0:6837629199 is in state 'finished'
[2025-10-11 08:06:13] 2025-10-11 06:05:36,789 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:06:13] 2025-10-11 06:05:37,043 | INFO     | time since job start (4560s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,049 | INFO     | time since job start (4562s) is within the limit (172800.0s)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,291 | INFO     | monitor loop #311: job 0:6837629199 is in state 'finished'
[2025-10-11 08:06:13] 2025-10-11 06:05:39,292 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,851 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 08:06:13] 2025-10-11 06:05:39,866 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2825.2371979166674
[2025-10-11 08:06:13] 2025-10-11 06:05:39,882 | INFO     | using path: /scratch/.boinc/slots/1/PanDA_Pilot-6837629199/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,883 | INFO     | extracted standard info from prmon json
[2025-10-11 08:06:13] 2025-10-11 06:05:39,883 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 08:06:13] 2025-10-11 06:05:39,883 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 08:06:13] 2025-10-11 06:05:39,883 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 08:06:13] 2025-10-11 06:05:39,883 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 08:06:13] 2025-10-11 06:05:39,885 | INFO     | fitting pss+swap vs Time
[2025-10-11 08:06:13] 2025-10-11 06:05:39,885 | INFO     | sum of square deviations: 97475316.98529397
[2025-10-11 08:06:13] 2025-10-11 06:05:39,885 | INFO     | sum of deviations: -295433549.5
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | mean x: 1760160553.514706
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | mean y: 2706284.5
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | -- intersect: 5337497656.280693
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | intersect: 5337497656.280693
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | chi2: 0.0017281343415286527
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | -- intersect: 5337497656.280693
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | current memory leak: -3.03 B/s (using 68 data points, chi2=0.00)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,886 | INFO     | could have reported an average CPU frequency of 2824 MHz (6 samples)
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | ..............................
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . Timing measurements:
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . get job = 0 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . initial setup = 1 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . payload setup = 6 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . stage-in = 0 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . payload execution = 4524 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . stage-out = 0 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | . log creation = 0 s
[2025-10-11 08:06:13] 2025-10-11 06:05:39,887 | INFO     | ..............................
[2025-10-11 08:06:13] 2025-10-11 06:05:40,365 | INFO     | 
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | job summary report
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | --------------------------------------------------
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | PanDA job id: 6837629199
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | task id: 46676269
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | errors: (none)
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | pilot state: finished 
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | transexitcode: 0
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | exeerrorcode: 0
[2025-10-11 08:06:13] 2025-10-11 06:05:40,366 | INFO     | exeerrordiag: 
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | exitcode: 0
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | exitmsg: OK
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | cpuconsumptiontime: 38694 s
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | nevents: 400
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | neventsw: 0
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | pid: 1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | pgrp: 1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | corecount: 12
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | event service: False
[2025-10-11 08:06:13] 2025-10-11 06:05:40,367 | INFO     | sizes: {0: 2348687, 1: 2348886, 6: 2349148, 11: 2349176, 4534: 2375548, 4535: 2384548, 4539: 2384732, 4547: 2384926}
[2025-10-11 08:06:13] 2025-10-11 06:05:40,368 | INFO     | --------------------------------------------------
[2025-10-11 08:06:13] 2025-10-11 06:05:40,368 | INFO     | 
[2025-10-11 08:06:13] 2025-10-11 06:05:40,368 | INFO     | executing command: ls -lF /scratch/.boinc/slots/1
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,395 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | job 6837629199 has completed (purged errors)
[2025-10-11 08:06:13] 2025-10-11 06:05:40,396 | INFO     | overall cleanup function is called
[2025-10-11 08:06:13] 2025-10-11 06:05:41,404 | INFO     | --- collectZombieJob: --- 10, [1652101]
[2025-10-11 08:06:13] 2025-10-11 06:05:41,404 | INFO     | zombie collector waiting for pid 1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:41,405 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:06:13] 2025-10-11 06:05:41,405 | INFO     | collected zombie processes
[2025-10-11 08:06:13] 2025-10-11 06:05:41,405 | INFO     | will attempt to kill all subprocesses of pid=1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:41,813 | INFO     | process IDs to be killed: [1652101] (in reverse order)
[2025-10-11 08:06:13] 2025-10-11 06:05:41,953 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:06:13] 2025-10-11 06:05:41,953 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:06:13] 2025-10-11 06:05:41,969 | INFO     | did not find any defunct processes belonging to 1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:41,983 | INFO     | did not find any defunct processes belonging to 1652101
[2025-10-11 08:06:13] 2025-10-11 06:05:41,983 | INFO     | ready for new job
[2025-10-11 08:06:13] 2025-10-11 06:05:41,983 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:06:13] 2025-10-11 06:05:41,985 | INFO     | ***************************************
[2025-10-11 08:06:13] 2025-10-11 06:05:41,985 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:06:13] 2025-10-11 06:05:41,985 | INFO     | ***************************************
[2025-10-11 08:06:13] 2025-10-11 06:05:41,985 | INFO     | 
[2025-10-11 08:06:13] 2025-10-11 06:05:41,991 | INFO     | architecture information:
[2025-10-11 08:06:13] 2025-10-11 06:05:41,992 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:06:13] 2025-10-11 06:05:42,015 | INFO     | cat /etc/os-release:
[2025-10-11 08:06:13] NAME="CentOS Linux"
[2025-10-11 08:06:13] VERSION="7 (Core)"
[2025-10-11 08:06:13] ID="centos"
[2025-10-11 08:06:13] ID_LIKE="rhel fedora"
[2025-10-11 08:06:13] VERSION_ID="7"
[2025-10-11 08:06:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:06:13] ANSI_COLOR="0;31"
[2025-10-11 08:06:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:06:13] HOME_URL="https://www.centos.org/"
[2025-10-11 08:06:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:06:13] 
[2025-10-11 08:06:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:06:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:06:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:06:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:06:13] 
[2025-10-11 08:06:13] 2025-10-11 06:05:42,015 | INFO     | ***************************************
[2025-10-11 08:06:13] 2025-10-11 06:05:42,517 | INFO     | executing command: df -mP /scratch/.boinc/slots/1
[2025-10-11 08:06:13] 2025-10-11 06:05:42,545 | INFO     | sufficient remaining disk space (1676659392512 B)
[2025-10-11 08:06:13] 2025-10-11 06:05:42,545 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:06:13] 2025-10-11 06:05:42,546 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:06:13] 2025-10-11 06:05:42,546 | INFO     | update_server=False
[2025-10-11 08:06:13] 2025-10-11 06:05:42,546 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:06:13] 2025-10-11 06:05:42,546 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:06:13] 2025-10-11 06:05:42,547 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:06:13] 2025-10-11 06:05:42,800 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:06:13] 2025-10-11 06:05:42,801 | INFO     | aborting loop
[2025-10-11 08:06:13] 2025-10-11 06:05:43,551 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:43,578 | INFO     | all data control threads have been joined
[2025-10-11 08:06:13] 2025-10-11 06:05:43,668 | INFO     | all payload control threads have been joined
[2025-10-11 08:06:13] 2025-10-11 06:05:43,805 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:43,869 | INFO     | all job control threads have been joined
[2025-10-11 08:06:13] 2025-10-11 06:05:43,875 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:43,896 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,143 | INFO     | [job] validate thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,290 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,338 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,371 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:06:13] 2025-10-11 06:05:44,553 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,584 | INFO     | [data] control thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,591 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,673 | INFO     | [payload] control thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,874 | INFO     | [job] control thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:44,984 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:06:13] 2025-10-11 06:05:45,020 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:45,989 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:46,550 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:53,326 | INFO     | job.realtimelogging is not enabled
[2025-10-11 08:06:13] 2025-10-11 06:05:54,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:06:13] 2025-10-11 06:05:54,347 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140441086052160)>', '<ExcThread(monitor, started 140440447735552)>']
[2025-10-11 08:06:13] 2025-10-11 06:05:59,372 | INFO     | all workflow threads have been joined
[2025-10-11 08:06:13] 2025-10-11 06:05:59,372 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:06:13] 2025-10-11 06:05:59,373 | INFO     | traces error code: 0
[2025-10-11 08:06:13] 2025-10-11 06:05:59,373 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:06:13] 2025-10-11 06:06:12,611 | INFO     | PID=1640488 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:06:13] 2025-10-11 06:06:12,612 | INFO     | .. there are 25 such processes running
[2025-10-11 08:06:13] 2025-10-11 06:06:12,613 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:06:13] 2025-10-11 06:06:12,613 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:06:13] 2025-10-11 06:06:12,613 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:06:13] 2025-10-11 06:06:12,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:06:13] 2025-10-11 06:06:12,613 | INFO     | [monitor] control thread has ended
[2025-10-11 08:06:13] 2025-10-11 06:06:12,770 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:06:13] 2025-10-11 06:06:12,773 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:06:13] 2025-10-11 06:06:12,776 [wrapper] pilotpid: 1640488
[2025-10-11 08:06:13] 2025-10-11 06:06:12,780 [wrapper] Pilot exit status: 0
[2025-10-11 08:06:13] 2025-10-11 06:06:12,790 [wrapper] pandaids: 6837629199
[2025-10-11 08:06:13] 2025-10-11 06:06:12,880 [wrapper] cleanup supervisor_pilot 1822159 1640489
[2025-10-11 08:06:13] 2025-10-11 06:06:12,883 [wrapper] Test setup, not cleaning
[2025-10-11 08:06:13] 2025-10-11 06:06:12,887 [wrapper] apfmon messages muted
[2025-10-11 08:06:13] 2025-10-11 06:06:12,889 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:06:13] 2025-10-11 06:06:12,892 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:06:13]  *** Error codes and diagnostics ***
[2025-10-11 08:06:13]     "exeErrorCode": 0,
[2025-10-11 08:06:13]     "exeErrorDiag": "",
[2025-10-11 08:06:13]     "pilotErrorCode": 0,
[2025-10-11 08:06:13]     "pilotErrorDiag": "",
[2025-10-11 08:06:13]  *** Listing of results directory ***
[2025-10-11 08:06:13] total 407968
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc    557409 Oct 10 14:01 pilot3.tar.gz
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc      5112 Oct 10 14:18 queuedata.json
[2025-10-11 08:06:13] -rwx------ 1 boinc boinc     36292 Oct 10 14:18 runpilot2-wrapper.sh
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc       100 Oct 11 06:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:06:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 06:49 run_atlas
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc       105 Oct 11 06:49 job.xml
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc 218880837 Oct 11 06:49 EVNT.46676267._001559.pool.root.1
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc      6665 Oct 11 06:49 init_data.xml
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 06:49 start_atlas.sh
[2025-10-11 08:06:13] drwxrwx--x 2 boinc boinc      4096 Oct 11 06:49 shared
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc    569682 Oct 11 06:49 input.tar.gz
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc         0 Oct 11 06:49 boinc_lockfile
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc      2550 Oct 11 06:49 pandaJob.out
[2025-10-11 08:06:13] -rw------- 1 boinc boinc    975517 Oct 11 06:49 agis_schedconf.cvmfs.json
[2025-10-11 08:06:13] -rw------- 1 boinc boinc   1560580 Oct 11 06:49 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:06:13] drwx------ 5 boinc boinc      4096 Oct 11 06:49 pilot3
[2025-10-11 08:06:13] -rw------- 1 boinc boinc 192903471 Oct 11 08:04 HITS.46676269._038410.pool.root.1
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc       529 Oct 11 08:04 boinc_task_state.xml
[2025-10-11 08:06:13] -rw------- 1 boinc boinc      1023 Oct 11 08:05 memory_monitor_summary.json
[2025-10-11 08:06:13] -rw------- 1 boinc boinc    386321 Oct 11 08:05 log.46676269._038410.job.log.tgz.1
[2025-10-11 08:06:13] -rw------- 1 boinc boinc      7777 Oct 11 08:05 heartbeat.json
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc      8192 Oct 11 08:06 boinc_mmap_file
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc        27 Oct 11 08:06 wrapper_checkpoint.txt
[2025-10-11 08:06:13] -rw------- 1 boinc boinc       823 Oct 11 08:06 pilotlog.txt
[2025-10-11 08:06:13] -rw------- 1 boinc boinc        95 Oct 11 08:06 pilot_heartbeat.json
[2025-10-11 08:06:13] -rw------- 1 boinc boinc    651453 Oct 11 08:06 log.46676269._038410.job.log.1
[2025-10-11 08:06:13] -rw------- 1 boinc boinc       357 Oct 11 08:06 output.list
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc       620 Oct 11 08:06 runtime_log
[2025-10-11 08:06:13] -rw------- 1 boinc boinc   1054720 Oct 11 08:06 result.tar.gz
[2025-10-11 08:06:13] -rw------- 1 boinc boinc       663 Oct 11 08:06 WnjNDm1FRR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmNxPMDm9iwpMn.diag
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc      8764 Oct 11 08:06 runtime_log.err
[2025-10-11 08:06:13] -rw-r--r-- 1 boinc boinc     22377 Oct 11 08:06 stderr.txt
[2025-10-11 08:06:13] HITS file was successfully produced:
[2025-10-11 08:06:13] -rw------- 1 boinc boinc 192903471 Oct 11 08:04 shared/HITS.pool.root.1
[2025-10-11 08:06:13]  *** Contents of shared directory: ***
[2025-10-11 08:06:13] total 403748
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc 218880837 Oct 11 06:49 ATLAS.root_0
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 06:49 start_atlas.sh
[2025-10-11 08:06:13] -rw-r--r-- 2 boinc boinc    569682 Oct 11 06:49 input.tar.gz
[2025-10-11 08:06:13] -rw------- 1 boinc boinc 192903471 Oct 11 08:04 HITS.pool.root.1
[2025-10-11 08:06:13] -rw------- 1 boinc boinc   1054720 Oct 11 08:06 result.tar.gz
08:06:14 (1636246): run_atlas exited; CPU time 38830.077730
08:06:14 (1636246): called boinc_finish(0)

</stderr_txt>
]]>

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