Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-13 18:56:10 (10728): vboxwrapper version 26210
2025-10-13 18:56:10 (10728): BOINC client version: 8.2.4
2025-10-13 18:56:11 (10728): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2025-10-13 18:56:11 (10728): Successfully copied 'init_data.xml' to the shared directory.
2025-10-13 18:56:12 (10728): Create VM. (boinc_290162c36f86405e, slot#0)
2025-10-13 18:56:12 (10728): Setting Memory Size for VM. (4400MB)
2025-10-13 18:56:12 (10728): Setting CPU Count for VM. (4)
2025-10-13 18:56:13 (10728): Setting Chipset Options for VM.
2025-10-13 18:56:13 (10728): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-13 18:56:13 (10728): Setting Boot Options for VM.
2025-10-13 18:56:14 (10728): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-13 18:56:14 (10728): Enabling VM Network Access.
2025-10-13 18:56:14 (10728): Disabling USB Support for VM.
2025-10-13 18:56:14 (10728): Disabling COM Port Support for VM.
2025-10-13 18:56:15 (10728): Disabling LPT Port Support for VM.
2025-10-13 18:56:15 (10728): Disabling Audio Support for VM.
2025-10-13 18:56:15 (10728): Disabling Clipboard Support for VM.
2025-10-13 18:56:16 (10728): Disabling Drag and Drop Support for VM.
2025-10-13 18:56:16 (10728): Adding storage controller(s) to VM.
2025-10-13 18:56:17 (10728): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-13 18:56:18 (10728): Adding VirtualBox Guest Additions to VM.
2025-10-13 18:56:18 (10728): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-13 18:56:18 (10728): forwarding host port 54833 to guest port 80
2025-10-13 18:56:19 (10728): Enabling remote desktop for VM.
2025-10-13 18:56:19 (10728): Required extension pack not installed, remote desktop not enabled.
2025-10-13 18:56:19 (10728): Enabling shared directory for VM.
2025-10-13 18:56:19 (10728): Starting VM using VBoxManage interface. (boinc_290162c36f86405e, slot#0)
2025-10-13 18:56:24 (10728): Successfully started VM. (PID = '15596')
2025-10-13 18:56:24 (10728): Reporting VM Process ID to BOINC.
2025-10-13 18:56:24 (10728): Guest Log: BIOS: VirtualBox 6.1.2
2025-10-13 18:56:24 (10728): Guest Log: CPUID EDX: 0x178bfbff
2025-10-13 18:56:24 (10728): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-13 18:56:24 (10728): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-13 18:56:24 (10728): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-13 18:56:24 (10728): Detected: Web Application Enabled (http://localhost:54833)
2025-10-13 18:56:24 (10728): Preference change detected
2025-10-13 18:56:24 (10728): Setting CPU throttle for VM. (90%)
2025-10-13 18:56:24 (10728): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-13 18:56:26 (10728): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-13 18:56:26 (10728): Guest Log: BIOS: Booting from Hard Disk...
2025-10-13 18:56:29 (10728): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-13 18:56:29 (10728): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-13 18:56:29 (10728): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-13 18:56:36 (10728): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-13 18:56:36 (10728): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-13 18:56:47 (10728): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000142 main     Log opened 2025-10-13T18:56:46.145819000Z
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000245 main     OS Product: Linux
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000272 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000295 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000318 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000318 main     Process ID: 1307
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.000319 main     Package type: LINUX_64BITS_GENERIC
2025-10-13 18:56:47 (10728): Guest Log: 00:00:00.002469 main     5.2.32 r132073 started. Verbose level = 0
2025-10-13 18:56:48 (10728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-13 18:56:48 (10728): Guest Log: [INFO] Mounting shared directory
2025-10-13 18:56:48 (10728): Guest Log: [INFO] Checking for init_data.xml
2025-10-13 18:56:57 (10728): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-13 18:56:57 (10728): Guest Log: [INFO] Detected branch: prod
2025-10-13 18:56:57 (10728): Guest Log: 00:00:10.004363 timesync vgsvcTimeSyncWorker: Radical guest time change: -37 788 632 203 000ns (GuestNow=1 760 344 017 517 419 000 ns GuestLast=1 760 381 806 149 622 000 ns fSetTimeLastLoop=true )
2025-10-13 18:56:58 (10728): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-13 18:56:58 (10728): Guest Log: Copying input files
2025-10-13 18:57:01 (10728): Guest Log: Copied input files into RunAtlas.
2025-10-13 18:57:01 (10728): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-13 18:57:01 (10728): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-13 18:57:01 (10728): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-13 18:57:01 (10728): Guest Log: Further information can be found at the LHC@home message board.
2025-10-13 18:57:12 (10728): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-13 18:57:13 (10728): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-13 18:57:13 (10728): Guest Log: 2.6.3.0 1583 0 32184 151654 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-13 18:57:16 (10728): Guest Log: copied the webapp to /var/www
2025-10-13 18:57:16 (10728): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-13 18:57:16 (10728): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-13 18:57:16 (10728): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-13 18:57:16 (10728): Guest Log:  *** Starting ATLAS job. (PandaID=6837706972 taskID=46676269) ***
2025-10-13 19:57:05 (10728): VM state change detected. (old = 'running', new = 'paused')
2025-10-14 06:24:42 (10728): VM state change detected. (old = 'paused', new = 'running')
2025-10-14 06:24:46 (10728): Guest Log: 01:00:21.562786 timesync vgsvcTimeSyncWorker: Radical host time change: 37 666 787 000 000ns (HostNow=1 760 385 285 861 000 000 ns HostLast=1 760 347 619 074 000 000 ns)
2025-10-14 06:24:56 (10728): Guest Log: 01:00:31.572132 timesync vgsvcTimeSyncWorker: Radical guest time change: 37 666 794 795 000ns (GuestNow=1 760 385 295 870 393 000 ns GuestLast=1 760 347 629 075 598 000 ns fSetTimeLastLoop=true )
2025-10-14 07:04:06 (10728): Status Report: Elapsed Time: '6000.000000'
2025-10-14 07:04:06 (10728): Status Report: CPU Time: '18751.031250'
2025-10-14 07:25:13 (10728): VM state change detected. (old = 'running', new = 'paused')
2025-10-14 08:05:16 (10728): VM state change detected. (old = 'paused', new = 'running')
2025-10-14 08:05:20 (10728): Guest Log: 02:00:52.749828 timesync vgsvcTimeSyncWorker: Radical host time change: 2 412 379 000 000ns (HostNow=1 760 391 319 426 000 000 ns HostLast=1 760 388 907 047 000 000 ns)
2025-10-14 08:05:30 (10728): Guest Log: 02:01:02.754259 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 412 382 668 000ns (GuestNow=1 760 391 329 430 487 000 ns GuestLast=1 760 388 917 047 819 000 ns fSetTimeLastLoop=true )
2025-10-14 09:17:07 (10728): Guest Log:  *** Job finished ***
2025-10-14 09:17:07 (10728): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,189 | INFO     | all workflow threads have been joined
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,190 | INFO     | end of generic workflow (traces error code: 0)
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,190 | INFO     | traces error code: 0
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,190 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,644 | INFO     | PID=5993 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,645 | INFO     | found 0 job(s) in 20 queues
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,645 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,645 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:01,645 | INFO     | [monitor] control thread has ended
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:02,101 [wrapper] ==== pilot stdout END ====
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:02,106 [wrapper] ==== wrapper stdout RESUME ====
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:02,110 [wrapper] pilotpid: 5993
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:02,115 [wrapper] Pilot exit status: 0
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,858 [wrapper] pandaids: 6837706972
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,889 [wrapper] cleanup supervisor_pilot 10396 5994
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,895 [wrapper] Test setup, not cleaning
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,900 [wrapper] apfmon messages muted
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,904 [wrapper] ==== wrapper stdout END ====
2025-10-14 09:17:07 (10728): Guest Log: 2025-10-13 22:47:03,908 [wrapper] ==== wrapper stderr END ====
2025-10-14 09:17:07 (10728): Guest Log:  *** Error codes and diagnostics ***
2025-10-14 09:17:07 (10728): Guest Log:     "exeErrorCode": 0,
2025-10-14 09:17:07 (10728): Guest Log:     "exeErrorDiag": "",
2025-10-14 09:17:07 (10728): Guest Log:     "pilotErrorCode": 0,
2025-10-14 09:17:07 (10728): Guest Log:     "pilotErrorDiag": "",
2025-10-14 09:17:07 (10728): Guest Log:  *** Listing of results directory ***
2025-10-14 09:17:07 (10728): Guest Log: total 197912
2025-10-14 09:17:07 (10728): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 18:18 pilot3.tar.gz
2025-10-14 09:17:07 (10728): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 18:23 runpilot2-wrapper.sh
2025-10-14 09:17:07 (10728): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 18:23 queuedata.json
2025-10-14 09:17:07 (10728): Guest Log: -rwxr-xr-x. 1 atlas atlas      5898 Oct 13 08:27 init_data.xml
2025-10-14 09:17:07 (10728): Guest Log: -rwxr-xr-x. 1 atlas atlas    569675 Oct 13 08:27 input.tar.gz
2025-10-14 09:17:07 (10728): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 13 08:27 start_atlas.sh
2025-10-14 09:17:07 (10728): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 13 08:27 EVNT.46676267._001751.pool.root.1 -> /data/./ATLAS.root_0
2025-10-14 09:17:07 (10728): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Oct 13 08:27 pandaJob.out
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas    972857 Oct 13 08:29 agis_schedconf.cvmfs.json
2025-10-14 09:17:07 (10728): Guest Log: drwx------. 5 atlas atlas      4096 Oct 13 08:30 pilot3
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas 195149666 Oct 13 22:45 HITS.46676269._043237.pool.root.1
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas        98 Oct 13 22:46 pilot_heartbeat.json
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas      1046 Oct 13 22:46 memory_monitor_summary.json
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 13 22:46 agis_ddmendpoints.agis.ALL.json
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas    340815 Oct 13 22:46 log.46676269._043237.job.log.tgz.1
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas      7828 Oct 13 22:46 heartbeat.json
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas       744 Oct 13 22:47 pilotlog.txt
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas   1503712 Oct 13 22:47 log.46676269._043237.job.log.1
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas       357 Oct 13 22:47 output.list
2025-10-14 09:17:07 (10728): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 13 22:47 runtime_log
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas   1863680 Oct 13 22:47 result.tar.gz
2025-10-14 09:17:07 (10728): Guest Log: -rw-r--r--. 1 atlas atlas      8670 Oct 13 22:47 runtime_log.err
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas       667 Oct 13 22:47 Pw8KDmswWR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmtOQMDmme7lwn.diag
2025-10-14 09:17:07 (10728): Guest Log: Looking for outputfile HITS.46676269._043237.pool.root.1
2025-10-14 09:17:07 (10728): Guest Log: HITS file was successfully produced
2025-10-14 09:17:07 (10728): Guest Log: -rw-------. 1 atlas atlas 195149666 Oct 13 22:45 /home/atlas/RunAtlas/HITS.46676269._043237.pool.root.1
2025-10-14 09:17:08 (10728): Guest Log: Successfully finished the ATLAS job!
2025-10-14 09:17:08 (10728): Guest Log: Copying the results back to the shared directory!
2025-10-14 09:17:08 (10728): Guest Log:  *** Contents of shared directory: ***
2025-10-14 09:17:08 (10728): Guest Log: total 409164
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root 221369541 Oct 13 08:26 ATLAS.root_0
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root 195149666 Oct 13 22:47 HITS.pool.root.1
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root      5898 Oct 13 08:26 init_data.xml
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root    569675 Oct 10 20:50 input.tar.gz
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root   1863680 Oct 13 22:47 result.tar.gz
2025-10-14 09:17:08 (10728): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 20:50 start_atlas.sh
2025-10-14 09:17:08 (10728): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-14 09:17:08 (10728): VM Completion File Detected.
2025-10-14 09:17:08 (10728): Powering off VM.
2025-10-14 09:17:09 (10728): Successfully stopped VM.
2025-10-14 09:17:09 (10728): Deregistering VM. (boinc_290162c36f86405e, slot#0)
2025-10-14 09:17:09 (10728): Removing network bandwidth throttle group from VM.
2025-10-14 09:17:09 (10728): Removing VM from VirtualBox.
2025-10-14 09:17:14 (10728): called boinc_finish(0)

</stderr_txt>
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