Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
21:12:23 (835608): wrapper (7.7.26015): starting
21:12:23 (835608): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 21:12:23] Arguments: --nthreads 12
[2025-10-10 21:12:23] Threads: 12
[2025-10-10 21:12:23] Checking for CVMFS
[2025-10-10 21:12:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 21:12:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 21:12:23] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 21:12:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 21:12:23] 2.11.0.0 3299214 706 82464 151560 0 188 4949175 6144000 12864 130560 0 13810385 100.000 26851 179 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 21:12:23] CVMFS is ok
[2025-10-10 21:12:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 21:12:23] Checking for apptainer binary...
[2025-10-10 21:12:23] apptainer is not installed, using version from CVMFS
[2025-10-10 21:12:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 21:12:23] radiat0r
[2025-10-10 21:12:23] apptainer works
[2025-10-10 21:12:23] Set ATHENA_PROC_NUMBER=12
[2025-10-10 21:12:23] Set ATHENA_CORE_NUMBER=12
[2025-10-10 21:12:23] Starting ATLAS job with PandaID=6837400701
[2025-10-10 21:12:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/15 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 22:07:48]  *** The last 200 lines of the pilot log: ***
[2025-10-10 22:07:48]  status=None
[2025-10-10 22:07:48]  status_code=0
[2025-10-10 22:07:48]  storage_token=
[2025-10-10 22:07:48]  surl=/var/lib/boinc/slots/15/PanDA_Pilot-6837400701/log.46676269._031958.job.log.tgz.1
[2025-10-10 22:07:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/4a/log.46676269._031958.job.log.tgz.1
[2025-10-10 22:07:48]  workdir=None
[2025-10-10 22:07:48] ]
[2025-10-10 22:07:48] 2025-10-10 22:07:07,930 | INFO     | transferring file log.46676269._031958.job.log.tgz.1 from /var/lib/boinc/slots/15/PanDA_Pilot-6837400701/log.46676269._031958.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-10 22:07:48] 2025-10-10 22:07:07,930 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/15/PanDA_Pilot-6837400701/log.46676269._031958.job.log.tgz.1 /var/lib/boinc/slots/15/log.46676269._031958.j
[2025-10-10 22:07:48] 2025-10-10 22:07:07,957 | INFO     | adding to output.list: log.46676269._031958.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2b/4a/log.46676269._031958.job.log.tg
[2025-10-10 22:07:48] 2025-10-10 22:07:07,958 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 22:07:48] 2025-10-10 22:07:07,959 | INFO     | summary of transferred files:
[2025-10-10 22:07:48] 2025-10-10 22:07:07,959 | INFO     |  -- lfn=log.46676269._031958.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 22:07:48] 2025-10-10 22:07:07,959 | INFO     | stage-out finished correctly
[2025-10-10 22:07:48] 2025-10-10 22:07:08,234 | INFO     | time since job start (3271s) is within the limit (172800.0s)
[2025-10-10 22:07:48] 2025-10-10 22:07:08,387 | WARNING  | process 867362 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 22:07:48] 2025-10-10 22:07:08,388 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6837400701/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 22:07:48] 2025-10-10 22:07:08,482 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 22:07:48] 2025-10-10 22:07:08,578 | INFO     | job 6837400701 has state=finished
[2025-10-10 22:07:48] 2025-10-10 22:07:08,579 | INFO     | preparing for final server update for job 6837400701 in state='finished'
[2025-10-10 22:07:48] 2025-10-10 22:07:08,580 | INFO     | this job has now completed (state=finished)
[2025-10-10 22:07:48] 2025-10-10 22:07:08,580 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 22:07:48] 2025-10-10 22:07:08,580 | INFO     | log transfer has been attempted: DONE
[2025-10-10 22:07:48] 2025-10-10 22:07:08,580 | INFO     | job 6837400701 has finished - writing final server update
[2025-10-10 22:07:48] 2025-10-10 22:07:08,581 | INFO     | total number of processed events: 400 (read)
[2025-10-10 22:07:48] 2025-10-10 22:07:08,582 | INFO     | executing command: lscpu
[2025-10-10 22:07:48] 2025-10-10 22:07:08,779 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 22:07:48] 2025-10-10 22:07:09,309 | INFO     | number of running child processes to parent process 867362: 1
[2025-10-10 22:07:48] 2025-10-10 22:07:09,309 | INFO     | maximum number of monitored processes: 6
[2025-10-10 22:07:48] 2025-10-10 22:07:10,239 | INFO     | time since job start (3273s) is within the limit (172800.0s)
[2025-10-10 22:07:48] 2025-10-10 22:07:11,813 | INFO     | monitor loop #227: job 0:6837400701 is in state 'finished'
[2025-10-10 22:07:48] 2025-10-10 22:07:11,813 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 22:07:48] 2025-10-10 22:07:12,245 | INFO     | time since job start (3275s) is within the limit (172800.0s)
[2025-10-10 22:07:48] 2025-10-10 22:07:14,250 | INFO     | time since job start (3277s) is within the limit (172800.0s)
[2025-10-10 22:07:48] 2025-10-10 22:07:14,317 | INFO     | monitor loop #228: job 0:6837400701 is in state 'finished'
[2025-10-10 22:07:48] 2025-10-10 22:07:14,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 22:07:48] 2025-10-10 22:07:14,994 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 22:07:48] 2025-10-10 22:07:15,056 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2254.045890625001
[2025-10-10 22:07:48] 2025-10-10 22:07:15,143 | INFO     | using path: /var/lib/boinc/slots/15/PanDA_Pilot-6837400701/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,144 | INFO     | extracted standard info from prmon json
[2025-10-10 22:07:48] 2025-10-10 22:07:15,144 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 22:07:48] 2025-10-10 22:07:15,144 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 22:07:48] 2025-10-10 22:07:15,144 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 22:07:48] 2025-10-10 22:07:15,144 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 22:07:48] 2025-10-10 22:07:15,146 | INFO     | fitting pss+swap vs Time
[2025-10-10 22:07:48] 2025-10-10 22:07:15,146 | INFO     | sum of square deviations: 32179208.0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,146 | INFO     | sum of deviations: 266454404.99999997
[2025-10-10 22:07:48] 2025-10-10 22:07:15,146 | INFO     | mean x: 1760132496.0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,146 | INFO     | mean y: 2674785.212765957
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | -- intersect: -14571800041.602264
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | intersect: -14571800041.602264
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | chi2: 0.0007357934081122378
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | -- intersect: -14571800041.602264
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | current memory leak: 8.28 B/s (using 47 data points, chi2=0.00)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,147 | INFO     | could have reported an average CPU frequency of 2319 MHz (5 samples)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | ..............................
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . Timing measurements:
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . get job = 0 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . initial setup = 1 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . payload setup = 7 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . stage-in = 0 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . payload execution = 3240 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . stage-out = 1 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | . log creation = 0 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,148 | INFO     | ..............................
[2025-10-10 22:07:48] 2025-10-10 22:07:15,218 | INFO     | 
[2025-10-10 22:07:48] 2025-10-10 22:07:15,218 | INFO     | job summary report
[2025-10-10 22:07:48] 2025-10-10 22:07:15,218 | INFO     | --------------------------------------------------
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | PanDA job id: 6837400701
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | task id: 46676269
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | errors: (none)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | pilot state: finished 
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | transexitcode: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | exeerrorcode: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | exeerrordiag: 
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | exitcode: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | exitmsg: OK
[2025-10-10 22:07:48] 2025-10-10 22:07:15,219 | INFO     | cpuconsumptiontime: 34002 s
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | nevents: 400
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | neventsw: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | pid: 867362
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | pgrp: 867362
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | corecount: 12
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | event service: False
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | sizes: {0: 2348858, 6: 2349120, 11: 2349148, 3251: 2374890, 3253: 2383890, 3254: 2383946, 3261: 2384300}
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | --------------------------------------------------
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | 
[2025-10-10 22:07:48] 2025-10-10 22:07:15,220 | INFO     | executing command: ls -lF /var/lib/boinc/slots/15
[2025-10-10 22:07:48] 2025-10-10 22:07:15,247 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,247 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,248 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 22:07:48] 2025-10-10 22:07:15,249 | INFO     | job 6837400701 has completed (purged errors)
[2025-10-10 22:07:48] 2025-10-10 22:07:15,249 | INFO     | overall cleanup function is called
[2025-10-10 22:07:48] 2025-10-10 22:07:16,254 | INFO     | --- collectZombieJob: --- 10, [867362]
[2025-10-10 22:07:48] 2025-10-10 22:07:16,255 | INFO     | zombie collector waiting for pid 867362
[2025-10-10 22:07:48] 2025-10-10 22:07:16,255 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 22:07:48] 2025-10-10 22:07:16,255 | INFO     | collected zombie processes
[2025-10-10 22:07:48] 2025-10-10 22:07:16,255 | INFO     | will attempt to kill all subprocesses of pid=867362
[2025-10-10 22:07:48] 2025-10-10 22:07:16,820 | INFO     | process IDs to be killed: [867362] (in reverse order)
[2025-10-10 22:07:48] 2025-10-10 22:07:17,057 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 22:07:48] 2025-10-10 22:07:17,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 22:07:48] 2025-10-10 22:07:17,086 | INFO     | did not find any defunct processes belonging to 867362
[2025-10-10 22:07:48] 2025-10-10 22:07:17,105 | INFO     | did not find any defunct processes belonging to 867362
[2025-10-10 22:07:48] 2025-10-10 22:07:17,105 | INFO     | ready for new job
[2025-10-10 22:07:48] 2025-10-10 22:07:17,105 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 22:07:48] 2025-10-10 22:07:17,107 | INFO     | ***************************************
[2025-10-10 22:07:48] 2025-10-10 22:07:17,108 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 22:07:48] 2025-10-10 22:07:17,108 | INFO     | ***************************************
[2025-10-10 22:07:48] 2025-10-10 22:07:17,108 | INFO     | 
[2025-10-10 22:07:48] 2025-10-10 22:07:17,139 | INFO     | architecture information:
[2025-10-10 22:07:48] 2025-10-10 22:07:17,140 | INFO     | executing command: cat /etc/os-release
[2025-10-10 22:07:48] 2025-10-10 22:07:17,160 | INFO     | cat /etc/os-release:
[2025-10-10 22:07:48] NAME="CentOS Linux"
[2025-10-10 22:07:48] VERSION="7 (Core)"
[2025-10-10 22:07:48] ID="centos"
[2025-10-10 22:07:48] ID_LIKE="rhel fedora"
[2025-10-10 22:07:48] VERSION_ID="7"
[2025-10-10 22:07:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 22:07:48] ANSI_COLOR="0;31"
[2025-10-10 22:07:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 22:07:48] HOME_URL="https://www.centos.org/"
[2025-10-10 22:07:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 22:07:48] 
[2025-10-10 22:07:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 22:07:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 22:07:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 22:07:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 22:07:48] 
[2025-10-10 22:07:48] 2025-10-10 22:07:17,160 | INFO     | ***************************************
[2025-10-10 22:07:48] 2025-10-10 22:07:17,663 | INFO     | executing command: df -mP /var/lib/boinc/slots/15
[2025-10-10 22:07:48] 2025-10-10 22:07:17,693 | INFO     | sufficient remaining disk space (1725525131264 B)
[2025-10-10 22:07:48] 2025-10-10 22:07:17,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 22:07:48] 2025-10-10 22:07:17,693 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 22:07:48] 2025-10-10 22:07:17,693 | INFO     | update_server=False
[2025-10-10 22:07:48] 2025-10-10 22:07:17,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 22:07:48] 2025-10-10 22:07:17,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:07:48] 2025-10-10 22:07:17,826 | INFO     | aborting loop
[2025-10-10 22:07:48] 2025-10-10 22:07:18,282 | INFO     | all payload control threads have been joined
[2025-10-10 22:07:48] 2025-10-10 22:07:18,571 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 22:07:48] 2025-10-10 22:07:18,661 | INFO     | all job control threads have been joined
[2025-10-10 22:07:48] 2025-10-10 22:07:18,698 | INFO     | [job] retrieve thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:18,760 | INFO     | [data] copytool_in thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:18,766 | INFO     | all data control threads have been joined
[2025-10-10 22:07:48] 2025-10-10 22:07:18,831 | INFO     | [job] job monitor thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:18,892 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,085 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 22:07:48] 2025-10-10 22:07:19,091 | INFO     | [payload] failed_post thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,243 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,286 | INFO     | [payload] control thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,667 | INFO     | [job] control thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,758 | INFO     | [payload] validate_post thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,772 | INFO     | [data] control thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:19,886 | INFO     | [job] validate thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:20,020 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:20,110 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:20,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 22:07:48] 2025-10-10 22:07:20,574 | INFO     | [data] copytool_out thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:21,229 | INFO     | [job] queue monitor thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:23,091 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 22:07:48] 2025-10-10 22:07:41,791 | INFO     | [monitor] cgroup control has ended
[2025-10-10 22:07:48] 2025-10-10 22:07:42,690 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140203904083776)>', '<ExcThread(monitor, started 140203452765952)>']
[2025-10-10 22:07:48] 2025-10-10 22:07:47,706 | INFO     | all workflow threads have been joined
[2025-10-10 22:07:48] 2025-10-10 22:07:47,707 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 22:07:48] 2025-10-10 22:07:47,707 | INFO     | traces error code: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:47,708 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 22:07:48] 2025-10-10 22:07:48,344 | INFO     | PID=844454 has CPU usage=11.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 22:07:48] 2025-10-10 22:07:48,345 | INFO     | .. there are 17 such processes running
[2025-10-10 22:07:48] 2025-10-10 22:07:48,346 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 22:07:48] 2025-10-10 22:07:48,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 22:07:48] 2025-10-10 22:07:48,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 22:07:48] 2025-10-10 22:07:48,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 22:07:48] 2025-10-10 22:07:48,346 | INFO     | [monitor] control thread has ended
[2025-10-10 22:07:48] 2025-10-10 22:07:48,561 [wrapper] ==== pilot stdout END ====
[2025-10-10 22:07:48] 2025-10-10 22:07:48,565 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 22:07:48] 2025-10-10 22:07:48,569 [wrapper] pilotpid: 844454
[2025-10-10 22:07:48] 2025-10-10 22:07:48,572 [wrapper] Pilot exit status: 0
[2025-10-10 22:07:48] 2025-10-10 22:07:48,585 [wrapper] pandaids: 6837400701
[2025-10-10 22:07:48] 2025-10-10 22:07:48,765 [wrapper] cleanup supervisor_pilot 1205920 844455
[2025-10-10 22:07:48] 2025-10-10 22:07:48,769 [wrapper] Test setup, not cleaning
[2025-10-10 22:07:48] 2025-10-10 22:07:48,774 [wrapper] apfmon messages muted
[2025-10-10 22:07:48] 2025-10-10 22:07:48,778 [wrapper] ==== wrapper stdout END ====
[2025-10-10 22:07:48] 2025-10-10 22:07:48,781 [wrapper] ==== wrapper stderr END ====
[2025-10-10 22:07:48]  *** Error codes and diagnostics ***
[2025-10-10 22:07:48]     "exeErrorCode": 0,
[2025-10-10 22:07:48]     "exeErrorDiag": "",
[2025-10-10 22:07:48]     "pilotErrorCode": 0,
[2025-10-10 22:07:48]     "pilotErrorDiag": "",
[2025-10-10 22:07:48]  *** Listing of results directory ***
[2025-10-10 22:07:48] total 413140
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc      5112 Oct 10 04:08 queuedata.json
[2025-10-10 22:07:48] -rwx------ 1 boinc boinc     36292 Oct 10 04:08 runpilot2-wrapper.sh
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc    557409 Oct 10 04:08 pilot3.tar.gz
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc       100 Oct 10 21:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 22:07:48] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 21:12 run_atlas
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc       105 Oct 10 21:12 job.xml
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc     15120 Oct 10 21:12 start_atlas.sh
[2025-10-10 22:07:48] drwxrwx--x 2 boinc boinc      4096 Oct 10 21:12 shared
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc    569683 Oct 10 21:12 input.tar.gz
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc      9396 Oct 10 21:12 init_data.xml
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc 218708783 Oct 10 21:12 EVNT.46676267._001302.pool.root.1
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc         0 Oct 10 21:12 boinc_setup_complete
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc         0 Oct 10 21:12 boinc_lockfile
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc      2550 Oct 10 21:12 pandaJob.out
[2025-10-10 22:07:48] -rw------- 1 boinc boinc    975533 Oct 10 21:12 agis_schedconf.cvmfs.json
[2025-10-10 22:07:48] -rw------- 1 boinc boinc   1560580 Oct 10 21:12 agis_ddmendpoints.agis.ALL.json
[2025-10-10 22:07:48] drwx------ 5 boinc boinc      4096 Oct 10 21:12 pilot3
[2025-10-10 22:07:48] -rw------- 1 boinc boinc 198733807 Oct 10 22:06 HITS.46676269._031958.pool.root.1
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc       529 Oct 10 22:06 boinc_task_state.xml
[2025-10-10 22:07:48] -rw------- 1 boinc boinc      1027 Oct 10 22:07 memory_monitor_summary.json
[2025-10-10 22:07:48] -rw------- 1 boinc boinc    369616 Oct 10 22:07 log.46676269._031958.job.log.tgz.1
[2025-10-10 22:07:48] -rw------- 1 boinc boinc      7742 Oct 10 22:07 heartbeat.json
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc      8192 Oct 10 22:07 boinc_mmap_file
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc        27 Oct 10 22:07 wrapper_checkpoint.txt
[2025-10-10 22:07:48] -rw------- 1 boinc boinc        95 Oct 10 22:07 pilot_heartbeat.json
[2025-10-10 22:07:48] -rw------- 1 boinc boinc       823 Oct 10 22:07 pilotlog.txt
[2025-10-10 22:07:48] -rw------- 1 boinc boinc    483740 Oct 10 22:07 log.46676269._031958.job.log.1
[2025-10-10 22:07:48] -rw------- 1 boinc boinc       357 Oct 10 22:07 output.list
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc       620 Oct 10 22:07 runtime_log
[2025-10-10 22:07:48] -rw------- 1 boinc boinc    870400 Oct 10 22:07 result.tar.gz
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc      8672 Oct 10 22:07 runtime_log.err
[2025-10-10 22:07:48] -rw------- 1 boinc boinc       643 Oct 10 22:07 qajMDmxbJR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQHcNDmaX9hzn.diag
[2025-10-10 22:07:48] -rw-r--r-- 1 boinc boinc     21740 Oct 10 22:07 stderr.txt
[2025-10-10 22:07:48] HITS file was successfully produced:
[2025-10-10 22:07:48] -rw------- 1 boinc boinc 198733807 Oct 10 22:06 shared/HITS.pool.root.1
[2025-10-10 22:07:48]  *** Contents of shared directory: ***
[2025-10-10 22:07:48] total 409096
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc     15120 Oct 10 21:12 start_atlas.sh
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc    569683 Oct 10 21:12 input.tar.gz
[2025-10-10 22:07:48] -rw-r--r-- 2 boinc boinc 218708783 Oct 10 21:12 ATLAS.root_0
[2025-10-10 22:07:48] -rw------- 1 boinc boinc 198733807 Oct 10 22:06 HITS.pool.root.1
[2025-10-10 22:07:48] -rw------- 1 boinc boinc    870400 Oct 10 22:07 result.tar.gz
22:07:50 (835608): run_atlas exited; CPU time 34212.097938
22:07:50 (835608): called boinc_finish(0)

</stderr_txt>
]]>

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