Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:03:44 (1489792): wrapper (7.7.26015): starting
21:03:44 (1489792): wrapper: running run_atlas (--nthreads 9)
[2025-10-10 21:03:44] Arguments: --nthreads 9
[2025-10-10 21:03:44] Threads: 9
[2025-10-10 21:03:44] Checking for CVMFS
[2025-10-10 21:03:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 21:03:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 21:03:45] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 21:03:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 21:03:45] 2.13.2.0 239285 127137 219672 151566 0 481 31227533 32935937 28508 16776704 0 86620129 99.657 81294028 30352 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 21:03:45] CVMFS is ok
[2025-10-10 21:03:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 21:03:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 21:03:45] Further information can be found at the LHC@home message board.
[2025-10-10 21:03:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 21:03:45] Checking for apptainer binary...
[2025-10-10 21:03:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 21:03:45] Running /usr/bin/apptainer --version
[2025-10-10 21:03:45] apptainer version 1.4.3-1.el9
[2025-10-10 21:03:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 21:03:46] c-6-6.aglt2.org
[2025-10-10 21:03:46] apptainer works
[2025-10-10 21:03:46] Set ATHENA_PROC_NUMBER=9
[2025-10-10 21:03:46] Set ATHENA_CORE_NUMBER=9
[2025-10-10 21:03:47] Starting ATLAS job with PandaID=6837663221
[2025-10-10 21:03:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:30:27 (2490214): wrapper (7.7.26015): starting
01:30:27 (2490214): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 01:30:27] Arguments: --nthreads 8
[2025-10-11 01:30:27] Threads: 8
[2025-10-11 01:30:27] This job has been restarted, cleaning up previous attempt
[2025-10-11 01:30:27] Checking for CVMFS
[2025-10-11 01:30:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 01:30:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 01:30:27] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 01:30:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 01:30:27] 2.13.2.0 239285 127404 217472 151573 2 161 18753458 32935936 30103 16776704 0 87319860 99.658 81379590 30353 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-11 01:30:27] CVMFS is ok
[2025-10-11 01:30:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 01:30:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 01:30:27] Further information can be found at the LHC@home message board.
[2025-10-11 01:30:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 01:30:27] Checking for apptainer binary...
[2025-10-11 01:30:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 01:30:27] Running /usr/bin/apptainer --version
[2025-10-11 01:30:27] apptainer version 1.4.3-1.el9
[2025-10-11 01:30:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 01:30:28] c-6-6.aglt2.org
[2025-10-11 01:30:28] apptainer works
[2025-10-11 01:30:28] Set ATHENA_PROC_NUMBER=8
[2025-10-11 01:30:28] Set ATHENA_CORE_NUMBER=8
[2025-10-11 01:30:28] Starting ATLAS job with PandaID=6837663221
[2025-10-11 01:30:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 11:09:10]  *** The last 200 lines of the pilot log: ***
[2025-10-11 11:09:10] 2025-10-11 15:08:17,503 | INFO     | time since job start (34641s) is within the limit (172800.0s)
[2025-10-11 11:09:10] 2025-10-11 15:08:17,503 | INFO     | 34643s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-10-11 11:09:10] 2025-10-11 15:08:18,890 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 11:09:10] 2025-10-11 15:08:18,915 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.1480000000006
[2025-10-11 11:09:10] 2025-10-11 15:08:18,946 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6837663221/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 11:09:10] 2025-10-11 15:08:18,947 | INFO     | extracted standard info from prmon json
[2025-10-11 11:09:10] 2025-10-11 15:08:18,947 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 11:09:10] 2025-10-11 15:08:18,947 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 11:09:10] 2025-10-11 15:08:18,948 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 11:09:10] 2025-10-11 15:08:18,948 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 11:09:10] 2025-10-11 15:08:19,000 | INFO     | fitting pss+swap vs Time
[2025-10-11 11:09:10] 2025-10-11 15:08:19,001 | INFO     | sum of square deviations: 56523596822.36345
[2025-10-11 11:09:10] 2025-10-11 15:08:19,027 | INFO     | sum of deviations: 67037006035.340454
[2025-10-11 11:09:10] 2025-10-11 15:08:19,027 | INFO     | mean x: 1760177998.1763668
[2025-10-11 11:09:10] 2025-10-11 15:08:19,027 | INFO     | mean y: 2137480.78659612
[2025-10-11 11:09:10] 2025-10-11 15:08:19,028 | INFO     | -- intersect: -2085434254.2155414
[2025-10-11 11:09:10] 2025-10-11 15:08:19,028 | INFO     | intersect: -2085434254.2155414
[2025-10-11 11:09:10] 2025-10-11 15:08:19,029 | INFO     | chi2: 3.1727947721440026
[2025-10-11 11:09:10] 2025-10-11 15:08:19,030 | INFO     | sum of square deviations: 55041589281.2544
[2025-10-11 11:09:10] 2025-10-11 15:08:19,056 | INFO     | sum of deviations: 107677653688.35933
[2025-10-11 11:09:10] 2025-10-11 15:08:19,056 | INFO     | mean x: 1760177845.6850533
[2025-10-11 11:09:10] 2025-10-11 15:08:19,056 | INFO     | mean y: 2141640.3523131674
[2025-10-11 11:09:10] 2025-10-11 15:08:19,056 | INFO     | -- intersect: -3441287645.984568
[2025-10-11 11:09:10] 2025-10-11 15:08:19,056 | INFO     | intersect: -3441287645.984568
[2025-10-11 11:09:10] 2025-10-11 15:08:19,057 | INFO     | chi2: 2.477713172370339
[2025-10-11 11:09:10] 2025-10-11 15:08:19,057 | INFO     | current chi2=2.477713172370339 (change=21.907549958044253 %)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,058 | INFO     | right removable region: 561
[2025-10-11 11:09:10] 2025-10-11 15:08:19,063 | INFO     | sum of square deviations: 55041216752.882545
[2025-10-11 11:09:10] 2025-10-11 15:08:19,092 | INFO     | sum of deviations: -38198937831.35943
[2025-10-11 11:09:10] 2025-10-11 15:08:19,093 | INFO     | mean x: 1760178150.6868327
[2025-10-11 11:09:10] 2025-10-11 15:08:19,093 | INFO     | mean y: 2148285.2081850534
[2025-10-11 11:09:10] 2025-10-11 15:08:19,093 | INFO     | -- intersect: 1223722583.8301768
[2025-10-11 11:09:10] 2025-10-11 15:08:19,093 | INFO     | intersect: 1223722583.8301768
[2025-10-11 11:09:10] 2025-10-11 15:08:19,094 | INFO     | chi2: 1.2114605393265228
[2025-10-11 11:09:10] 2025-10-11 15:08:19,094 | INFO     | current chi2=1.2114605393265228 (change=61.817242326458974 %)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,095 | INFO     | sum of square deviations: 53585010747.66958
[2025-10-11 11:09:10] 2025-10-11 15:08:19,151 | INFO     | sum of deviations: -57889094208.10947
[2025-10-11 11:09:10] 2025-10-11 15:08:19,151 | INFO     | mean x: 1760178303.195691
[2025-10-11 11:09:10] 2025-10-11 15:08:19,151 | INFO     | mean y: 2150337.037701975
[2025-10-11 11:09:10] 2025-10-11 15:08:19,151 | INFO     | -- intersect: 1903710609.1180258
[2025-10-11 11:09:10] 2025-10-11 15:08:19,151 | INFO     | intersect: 1903710609.1180258
[2025-10-11 11:09:10] 2025-10-11 15:08:19,152 | INFO     | chi2: 1.0885946639947965
[2025-10-11 11:09:10] 2025-10-11 15:08:19,152 | INFO     | current chi2=1.0885946639947965 (change=10.141962642879811 %)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,152 | INFO     | left removable region: 20
[2025-10-11 11:09:10] 2025-10-11 15:08:19,153 | INFO     | sum of square deviations: 49098583586.26238
[2025-10-11 11:09:10] 2025-10-11 15:08:19,222 | INFO     | sum of deviations: -1004182699.3604305
[2025-10-11 11:09:10] 2025-10-11 15:08:19,222 | INFO     | mean x: 1760178425.2181146
[2025-10-11 11:09:10] 2025-10-11 15:08:19,222 | INFO     | mean y: 2152841.5878003696
[2025-10-11 11:09:10] 2025-10-11 15:08:19,222 | INFO     | -- intersect: 38152672.81075381
[2025-10-11 11:09:10] 2025-10-11 15:08:19,253 | INFO     | intersect: 38152672.81075381
[2025-10-11 11:09:10] 2025-10-11 15:08:19,253 | INFO     | chi2: 0.3625114495940929
[2025-10-11 11:09:10] 2025-10-11 15:08:19,254 | INFO     | -- intersect: 38152672.81075381
[2025-10-11 11:09:10] 2025-10-11 15:08:19,254 | INFO     | current memory leak: -0.02 B/s (using 541 data points, chi2=0.36)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | could have reported an average CPU frequency of 2600 MHz (22 samples)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | ..............................
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . Timing measurements:
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . get job = 0 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . initial setup = 3 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . payload setup = 17 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . stage-in = 0 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,255 | INFO     | . payload execution = 34564 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,256 | INFO     | . stage-out = 3 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,256 | INFO     | . log creation = 0 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,256 | INFO     | ..............................
[2025-10-11 11:09:10] 2025-10-11 15:08:19,512 | INFO     | time since job start (34643s) is within the limit (172800.0s)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,512 | INFO     | 
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | job summary report
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | --------------------------------------------------
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | PanDA job id: 6837663221
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | task id: 46676269
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | errors: (none)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | pilot state: finished 
[2025-10-11 11:09:10] 2025-10-11 15:08:19,513 | INFO     | transexitcode: 0
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | exeerrorcode: 0
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | exeerrordiag: 
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | exitcode: 0
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | exitmsg: OK
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | cpuconsumptiontime: 51900 s
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | nevents: 400
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | neventsw: 0
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | pid: 2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:19,514 | INFO     | pgrp: 2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | corecount: 8
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | event service: False
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 16: 2349175, 23: 2349203, 34585: 2388908, 34590: 2397906, 34592: 2397962, 34609: 2398156}
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | --------------------------------------------------
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | 
[2025-10-11 11:09:10] 2025-10-11 15:08:19,515 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-11 11:09:10] 2025-10-11 15:08:19,689 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,689 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,689 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,689 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,690 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,691 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 11:09:10] 2025-10-11 15:08:19,704 | INFO     | job 6837663221 has completed (purged errors)
[2025-10-11 11:09:10] 2025-10-11 15:08:19,704 | INFO     | overall cleanup function is called
[2025-10-11 11:09:10] 2025-10-11 15:08:20,713 | INFO     | --- collectZombieJob: --- 10, [2512941]
[2025-10-11 11:09:10] 2025-10-11 15:08:20,714 | INFO     | zombie collector waiting for pid 2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:20,715 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 11:09:10] 2025-10-11 15:08:20,716 | INFO     | collected zombie processes
[2025-10-11 11:09:10] 2025-10-11 15:08:20,716 | INFO     | will attempt to kill all subprocesses of pid=2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:21,558 | INFO     | process IDs to be killed: [2512941] (in reverse order)
[2025-10-11 11:09:10] 2025-10-11 15:08:22,178 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 11:09:10] 2025-10-11 15:08:22,179 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 11:09:10] 2025-10-11 15:08:22,239 | INFO     | did not find any defunct processes belonging to 2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:22,271 | INFO     | did not find any defunct processes belonging to 2512941
[2025-10-11 11:09:10] 2025-10-11 15:08:22,272 | INFO     | ready for new job
[2025-10-11 11:09:10] 2025-10-11 15:08:22,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 11:09:10] 2025-10-11 15:08:22,275 | INFO     | ***************************************
[2025-10-11 11:09:10] 2025-10-11 15:08:22,275 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 11:09:10] 2025-10-11 15:08:22,275 | INFO     | ***************************************
[2025-10-11 11:09:10] 2025-10-11 15:08:22,275 | INFO     | 
[2025-10-11 11:09:10] 2025-10-11 15:08:22,292 | INFO     | architecture information:
[2025-10-11 11:09:10] 2025-10-11 15:08:22,296 | INFO     | executing command: cat /etc/os-release
[2025-10-11 11:09:10] 2025-10-11 15:08:22,389 | INFO     | cat /etc/os-release:
[2025-10-11 11:09:10] NAME="CentOS Linux"
[2025-10-11 11:09:10] VERSION="7 (Core)"
[2025-10-11 11:09:10] ID="centos"
[2025-10-11 11:09:10] ID_LIKE="rhel fedora"
[2025-10-11 11:09:10] VERSION_ID="7"
[2025-10-11 11:09:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 11:09:10] ANSI_COLOR="0;31"
[2025-10-11 11:09:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 11:09:10] HOME_URL="https://www.centos.org/"
[2025-10-11 11:09:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 11:09:10] 
[2025-10-11 11:09:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 11:09:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 11:09:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 11:09:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 11:09:10] 
[2025-10-11 11:09:10] 2025-10-11 15:08:22,393 | INFO     | ***************************************
[2025-10-11 11:09:10] 2025-10-11 15:08:22,897 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-11 11:09:10] 2025-10-11 15:08:22,949 | INFO     | sufficient remaining disk space (75658952704 B)
[2025-10-11 11:09:10] 2025-10-11 15:08:22,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 11:09:10] 2025-10-11 15:08:22,950 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 11:09:10] 2025-10-11 15:08:22,950 | INFO     | update_server=False
[2025-10-11 11:09:10] 2025-10-11 15:08:22,950 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 11:09:10] 2025-10-11 15:08:22,972 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:09:10] 2025-10-11 15:08:22,972 | INFO     | aborting loop
[2025-10-11 11:09:10] 2025-10-11 15:08:23,153 | INFO     | all data control threads have been joined
[2025-10-11 11:09:10] 2025-10-11 15:08:23,350 | INFO     | all job control threads have been joined
[2025-10-11 11:09:10] 2025-10-11 15:08:23,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 11:09:10] 2025-10-11 15:08:23,835 | INFO     | all payload control threads have been joined
[2025-10-11 11:09:10] 2025-10-11 15:08:23,956 | INFO     | [job] retrieve thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:23,984 | INFO     | [job] job monitor thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,160 | INFO     | [data] control thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,357 | INFO     | [job] control thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,396 | INFO     | [job] validate thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:09:10] 2025-10-11 15:08:24,699 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,842 | INFO     | [payload] control thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,847 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:24,927 | INFO     | [data] copytool_in thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,115 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,143 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,213 | INFO     | [payload] failed_post thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,221 | INFO     | [payload] validate_post thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,439 | INFO     | [data] copytool_out thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:25,562 | INFO     | [job] queue monitor thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:26,328 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 11:09:10] 2025-10-11 15:08:30,341 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 11:09:10] 2025-10-11 15:08:53,351 | INFO     | PID=2497794 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 11:09:10] 2025-10-11 15:08:53,352 | INFO     | .. there are 40 such processes running
[2025-10-11 11:09:10] 2025-10-11 15:08:53,352 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 11:09:10] 2025-10-11 15:08:53,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 11:09:10] 2025-10-11 15:08:53,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 11:09:10] 2025-10-11 15:09:04,622 | INFO     | [monitor] cgroup control has ended
[2025-10-11 11:09:10] 2025-10-11 15:09:04,833 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139954928805696)>', '<ExcThread(monitor, started 139954411771648)>']
[2025-10-11 11:09:10] 2025-10-11 15:09:05,435 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 11:09:10] 2025-10-11 15:09:05,436 | INFO     | [monitor] control thread has ended
[2025-10-11 11:09:10] 2025-10-11 15:09:09,859 | INFO     | all workflow threads have been joined
[2025-10-11 11:09:10] 2025-10-11 15:09:09,859 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 11:09:10] 2025-10-11 15:09:09,860 | INFO     | traces error code: 0
[2025-10-11 11:09:10] 2025-10-11 15:09:09,860 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 11:09:10] 2025-10-11 15:09:10,124 [wrapper] ==== pilot stdout END ====
[2025-10-11 11:09:10] 2025-10-11 15:09:10,126 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 11:09:10] 2025-10-11 15:09:10,129 [wrapper] pilotpid: 2497794
[2025-10-11 11:09:10] 2025-10-11 15:09:10,132 [wrapper] Pilot exit status: 0
[2025-10-11 11:09:10] 2025-10-11 15:09:10,148 [wrapper] pandaids: 6837663221 6837663221
[2025-10-11 11:09:10] 2025-10-11 15:09:10,235 [wrapper] cleanup supervisor_pilot  136997 2497795
[2025-10-11 11:09:10] 2025-10-11 15:09:10,238 [wrapper] Test setup, not cleaning
[2025-10-11 11:09:10] 2025-10-11 15:09:10,241 [wrapper] apfmon messages muted
[2025-10-11 11:09:10] 2025-10-11 15:09:10,245 [wrapper] ==== wrapper stdout END ====
[2025-10-11 11:09:10] 2025-10-11 15:09:10,248 [wrapper] ==== wrapper stderr END ====
[2025-10-11 11:09:10]  *** Error codes and diagnostics ***
[2025-10-11 11:09:10]     "exeErrorCode": 0,
[2025-10-11 11:09:10]     "exeErrorDiag": "",
[2025-10-11 11:09:10]     "pilotErrorCode": 0,
[2025-10-11 11:09:10]     "pilotErrorDiag": "",
[2025-10-11 11:09:10]  *** Listing of results directory ***
[2025-10-11 11:09:10] total 645104
[2025-10-11 11:09:10] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 10:05 pilot3.tar.gz
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 10:39 queuedata.json
[2025-10-11 11:09:10] -rwx------. 1 boincer umatlas     36292 Oct 10 10:41 runpilot2-wrapper.sh
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas       100 Oct 10 21:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 11:09:10] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 21:03 run_atlas
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas       105 Oct 10 21:03 job.xml
[2025-10-11 11:09:10] -rw-r--r--. 3 boincer umatlas 222101324 Oct 10 21:03 EVNT.46676267._001633.pool.root.1
[2025-10-11 11:09:10] -rw-r--r--. 3 boincer umatlas 222101324 Oct 10 21:03 ATLAS.root_0
[2025-10-11 11:09:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 21:03 start_atlas.sh
[2025-10-11 11:09:10] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 21:03 shared
[2025-10-11 11:09:10] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 21:03 input.tar.gz
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas         0 Oct 10 21:03 boinc_lockfile
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 01:30 pandaJob.out
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas    975533 Oct 11 01:30 agis_schedconf.cvmfs.json
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas      6659 Oct 11 11:02 init_data.xml
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas 203411858 Oct 11 11:07 HITS.46676269._040277.pool.root.1
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas       531 Oct 11 11:07 boinc_task_state.xml
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas      1052 Oct 11 11:07 memory_monitor_summary.json
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas        96 Oct 11 11:07 pilot_heartbeat.json
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas   1560580 Oct 11 11:07 agis_ddmendpoints.agis.ALL.json
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas    697850 Oct 11 11:07 log.46676269._040277.job.log.tgz.1
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas      7842 Oct 11 11:08 heartbeat.json
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 11:09 boinc_mmap_file
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas        28 Oct 11 11:09 wrapper_checkpoint.txt
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas      4824 Oct 11 11:09 pilotlog.txt
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas   3834174 Oct 11 11:09 log.46676269._040277.job.log.1
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas       357 Oct 11 11:09 output.list
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas       620 Oct 11 11:09 runtime_log
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas   4546560 Oct 11 11:09 result.tar.gz
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas       783 Oct 11 11:09 WYGODmzTTR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmrddNDmQydkLo.diag
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas      8774 Oct 11 11:09 runtime_log.err
[2025-10-11 11:09:10] -rw-r--r--. 1 boincer umatlas     23388 Oct 11 11:09 stderr.txt
[2025-10-11 11:09:10] HITS file was successfully produced:
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas 203411858 Oct 11 11:07 shared/HITS.pool.root.1
[2025-10-11 11:09:10]  *** Contents of shared directory: ***
[2025-10-11 11:09:10] total 420568
[2025-10-11 11:09:10] -rw-r--r--. 3 boincer umatlas 222101324 Oct 10 21:03 ATLAS.root_0
[2025-10-11 11:09:10] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 21:03 start_atlas.sh
[2025-10-11 11:09:10] -rw-r--r--. 2 boincer umatlas    569684 Oct 10 21:03 input.tar.gz
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas 203411858 Oct 11 11:07 HITS.pool.root.1
[2025-10-11 11:09:10] -rw-------. 1 boincer umatlas   4546560 Oct 11 11:09 result.tar.gz
11:09:12 (2490214): run_atlas exited; CPU time 53335.322412
11:09:12 (2490214): called boinc_finish(0)

</stderr_txt>
]]>

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