Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:00:16 (30192): wrapper (7.7.26015): starting
16:00:16 (30192): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 16:00:16] Arguments: --nthreads 12
[2025-10-10 16:00:16] Threads: 12
[2025-10-10 16:00:16] Checking for CVMFS
[2025-10-10 16:00:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:00:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:00:17] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:00:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:00:17] 2.11.2.0 2991 220408 100216 151559 1 57 12012592 20275200 1 130560 1 106716313 99.983 13373994 12418 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-10 16:00:17] CVMFS is ok
[2025-10-10 16:00:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 16:00:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 16:00:17] Further information can be found at the LHC@home message board.
[2025-10-10 16:00:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:00:17] Checking for apptainer binary...
[2025-10-10 16:00:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 16:00:17] Running /usr/bin/apptainer --version
[2025-10-10 16:00:17] apptainer version 1.3.2-1.el7
[2025-10-10 16:00:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:00:18] c-205-32.aglt2.org
[2025-10-10 16:00:18] apptainer works
[2025-10-10 16:00:18] Set ATHENA_PROC_NUMBER=12
[2025-10-10 16:00:18] Set ATHENA_CORE_NUMBER=12
[2025-10-10 16:00:18] Starting ATLAS job with PandaID=6836603282
[2025-10-10 16:00:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:17:49]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:17:49] 2025-10-10 21:17:10,004 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-6836603282/log.46676269._009552.job.log.tgz.1 /tmp/boinchome/slots/0/log.46676269._009552.job
[2025-10-10 17:17:49] 2025-10-10 21:17:10,024 | INFO     | adding to output.list: log.46676269._009552.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/6a/e0/log.46676269._009552.job.log.tg
[2025-10-10 17:17:49] 2025-10-10 21:17:10,025 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 17:17:49] 2025-10-10 21:17:10,025 | INFO     | summary of transferred files:
[2025-10-10 17:17:49] 2025-10-10 21:17:10,025 | INFO     |  -- lfn=log.46676269._009552.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 17:17:49] 2025-10-10 21:17:10,026 | INFO     | stage-out finished correctly
[2025-10-10 17:17:49] 2025-10-10 21:17:10,283 | INFO     | time since job start (4597s) is within the limit (172800.0s)
[2025-10-10 17:17:49] 2025-10-10 21:17:11,213 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 17:17:49] 2025-10-10 21:17:11,920 | INFO     | job 6836603282 has state=finished
[2025-10-10 17:17:49] 2025-10-10 21:17:11,920 | INFO     | preparing for final server update for job 6836603282 in state='finished'
[2025-10-10 17:17:49] 2025-10-10 21:17:11,921 | INFO     | this job has now completed (state=finished)
[2025-10-10 17:17:49] 2025-10-10 21:17:11,921 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 17:17:49] 2025-10-10 21:17:11,921 | INFO     | log transfer has been attempted: DONE
[2025-10-10 17:17:49] 2025-10-10 21:17:11,921 | INFO     | job 6836603282 has finished - writing final server update
[2025-10-10 17:17:49] 2025-10-10 21:17:11,922 | INFO     | total number of processed events: 400 (read)
[2025-10-10 17:17:49] 2025-10-10 21:17:11,923 | INFO     | executing command: lscpu
[2025-10-10 17:17:49] 2025-10-10 21:17:11,948 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 17:17:49] 2025-10-10 21:17:12,290 | INFO     | time since job start (4599s) is within the limit (172800.0s)
[2025-10-10 17:17:49] 2025-10-10 21:17:13,016 | WARNING  | process 8066 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 17:17:49] 2025-10-10 21:17:13,016 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836603282/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:17:49] 2025-10-10 21:17:13,017 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836603282/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:17:49] 2025-10-10 21:17:13,017 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-10 17:17:49] 2025-10-10 21:17:13,017 | WARNING  | maxPSS not found in memory monitor output
[2025-10-10 17:17:49] 2025-10-10 21:17:13,018 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4000031 B
[2025-10-10 17:17:49] 2025-10-10 21:17:13,018 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 16014 B
[2025-10-10 17:17:49] 2025-10-10 21:17:13,018 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 17:17:49] 2025-10-10 21:17:14,296 | INFO     | time since job start (4601s) is within the limit (172800.0s)
[2025-10-10 17:17:49] 2025-10-10 21:17:16,301 | INFO     | time since job start (4603s) is within the limit (172800.0s)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,629 | INFO     | CPU arch script returned: x86-64-v2
[2025-10-10 17:17:49] 2025-10-10 21:17:17,635 | INFO     | found 12 cores (6 cores per socket, 2 sockets) , CPU MHz: 1718.0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,637 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6836603282/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,638 | INFO     | extracted standard info from prmon json
[2025-10-10 17:17:49] 2025-10-10 21:17:17,638 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:17:49] 2025-10-10 21:17:17,638 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:17:49] 2025-10-10 21:17:17,638 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:17:49] 2025-10-10 21:17:17,638 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:17:49] 2025-10-10 21:17:17,640 | INFO     | fitting pss+swap vs Time
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | sum of square deviations: 97479037.0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | sum of deviations: -3003014719.5
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | mean x: 1760128809.5
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | mean y: 2707261.455882353
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | -- intersect: 54226598734.08616
[2025-10-10 17:17:49] 2025-10-10 21:17:17,641 | INFO     | intersect: 54226598734.08616
[2025-10-10 17:17:49] 2025-10-10 21:17:17,642 | INFO     | chi2: 0.045298829477830996
[2025-10-10 17:17:49] 2025-10-10 21:17:17,642 | INFO     | -- intersect: 54226598734.08616
[2025-10-10 17:17:49] 2025-10-10 21:17:17,642 | INFO     | current memory leak: -30.81 B/s (using 68 data points, chi2=0.05)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,642 | INFO     | could have reported an average CPU frequency of 2060 MHz (6 samples)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | ..............................
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . Timing measurements:
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . get job = 0 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . initial setup = 2 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . payload setup = 6 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . stage-in = 0 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . payload execution = 4570 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . stage-out = 0 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,643 | INFO     | . log creation = 0 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,644 | INFO     | ..............................
[2025-10-10 17:17:49] 2025-10-10 21:17:17,666 | INFO     | sufficient remaining disk space (29347545088 B)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,682 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,729 | INFO     | 
[2025-10-10 17:17:49] 2025-10-10 21:17:17,729 | INFO     | job summary report
[2025-10-10 17:17:49] 2025-10-10 21:17:17,729 | INFO     | --------------------------------------------------
[2025-10-10 17:17:49] 2025-10-10 21:17:17,729 | INFO     | PanDA job id: 6836603282
[2025-10-10 17:17:49] 2025-10-10 21:17:17,729 | INFO     | task id: 46676269
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | errors: (none)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | pilot state: finished 
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | transexitcode: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | exeerrorcode: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | exeerrordiag: 
[2025-10-10 17:17:49] 2025-10-10 21:17:17,730 | INFO     | exitcode: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | exitmsg: OK
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | cpuconsumptiontime: 49916 s
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | nevents: 400
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | neventsw: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | pid: 8066
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | pgrp: 8066
[2025-10-10 17:17:49] 2025-10-10 21:17:17,731 | INFO     | corecount: 12
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | event service: False
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | sizes: {0: 2348681, 1: 2348880, 5: 2349142, 11: 2349198, 4580: 2375331, 4581: 2384329, 4582: 2384513, 4589: 2384707}
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | --------------------------------------------------
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | size of work directory /tmp/boinchome/slots/0/PanDA_Pilot-6836603282: 4299477 B (within 2537553920 B limit)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | 
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-10-10 17:17:49] 2025-10-10 21:17:17,732 | INFO     | pfn file=/tmp/boinchome/slots/0/PanDA_Pilot-6836603282/HITS.46676269._009552.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,733 | INFO     | total size of present files: 0 B (workdir size: 4299477 B)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,733 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-6836603282/HITS.46676269._009552.pool.root.1 since it does not exist
[2025-10-10 17:17:49] 2025-10-10 21:17:17,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,757 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,758 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,758 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,758 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,758 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,758 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,759 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,760 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,760 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,760 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:17:49] 2025-10-10 21:17:17,760 | INFO     | job 6836603282 has completed (purged errors)
[2025-10-10 17:17:49] 2025-10-10 21:17:17,760 | INFO     | overall cleanup function is called
[2025-10-10 17:17:49] 2025-10-10 21:17:17,831 | INFO     | number of running child processes to parent process 8066: 1
[2025-10-10 17:17:49] 2025-10-10 21:17:17,832 | INFO     | maximum number of monitored processes: 6
[2025-10-10 17:17:49] 2025-10-10 21:17:17,832 | INFO     | aborting job monitoring since job object (job id=6836603282) has expired
[2025-10-10 17:17:49] 2025-10-10 21:17:18,769 | INFO     | --- collectZombieJob: --- 10, [8066]
[2025-10-10 17:17:49] 2025-10-10 21:17:18,769 | INFO     | zombie collector waiting for pid 8066
[2025-10-10 17:17:49] 2025-10-10 21:17:18,769 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:17:49] 2025-10-10 21:17:18,769 | INFO     | collected zombie processes
[2025-10-10 17:17:49] 2025-10-10 21:17:18,769 | INFO     | will attempt to kill all subprocesses of pid=8066
[2025-10-10 17:17:49] 2025-10-10 21:17:18,856 | INFO     | process IDs to be killed: [8066] (in reverse order)
[2025-10-10 17:17:49] 2025-10-10 21:17:18,904 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:17:49] 2025-10-10 21:17:18,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:17:49] 2025-10-10 21:17:18,908 | INFO     | did not find any defunct processes belonging to 8066
[2025-10-10 17:17:49] 2025-10-10 21:17:18,911 | INFO     | did not find any defunct processes belonging to 8066
[2025-10-10 17:17:49] 2025-10-10 21:17:18,911 | INFO     | ready for new job
[2025-10-10 17:17:49] 2025-10-10 21:17:18,911 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:17:49] 2025-10-10 21:17:18,912 | INFO     | ***************************************
[2025-10-10 17:17:49] 2025-10-10 21:17:18,912 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:17:49] 2025-10-10 21:17:18,912 | INFO     | ***************************************
[2025-10-10 17:17:49] 2025-10-10 21:17:18,912 | INFO     | 
[2025-10-10 17:17:49] 2025-10-10 21:17:18,913 | INFO     | architecture information:
[2025-10-10 17:17:49] 2025-10-10 21:17:18,913 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:17:49] 2025-10-10 21:17:18,928 | INFO     | cat /etc/os-release:
[2025-10-10 17:17:49] NAME="CentOS Linux"
[2025-10-10 17:17:49] VERSION="7 (Core)"
[2025-10-10 17:17:49] ID="centos"
[2025-10-10 17:17:49] ID_LIKE="rhel fedora"
[2025-10-10 17:17:49] VERSION_ID="7"
[2025-10-10 17:17:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:17:49] ANSI_COLOR="0;31"
[2025-10-10 17:17:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:17:49] HOME_URL="https://www.centos.org/"
[2025-10-10 17:17:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:17:49] 
[2025-10-10 17:17:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:17:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:17:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:17:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:17:49] 
[2025-10-10 17:17:49] 2025-10-10 21:17:18,928 | INFO     | ***************************************
[2025-10-10 17:17:49] 2025-10-10 21:17:19,431 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-10-10 17:17:49] 2025-10-10 21:17:19,506 | INFO     | sufficient remaining disk space (29352787968 B)
[2025-10-10 17:17:49] 2025-10-10 21:17:19,507 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:17:49] 2025-10-10 21:17:19,507 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:17:49] 2025-10-10 21:17:19,507 | INFO     | update_server=False
[2025-10-10 17:17:49] 2025-10-10 21:17:19,507 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:17:49] 2025-10-10 21:17:19,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:17:49] 2025-10-10 21:17:19,508 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:17:49] 2025-10-10 21:17:19,508 | INFO     | aborting loop
[2025-10-10 17:17:49] 2025-10-10 21:17:20,125 | INFO     | all data control threads have been joined
[2025-10-10 17:17:49] 2025-10-10 21:17:20,340 | INFO     | all payload control threads have been joined
[2025-10-10 17:17:49] 2025-10-10 21:17:20,511 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:20,513 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:20,514 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:20,623 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:17:49] 2025-10-10 21:17:20,672 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:20,739 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:20,785 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,023 | INFO     | all job control threads have been joined
[2025-10-10 17:17:49] 2025-10-10 21:17:21,131 | INFO     | [data] control thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,346 | INFO     | [payload] control thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,412 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,416 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,479 | INFO     | [job] validate thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,800 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:17:49] 2025-10-10 21:17:21,935 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:21,940 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:22,028 | INFO     | [job] control thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:22,628 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:25,806 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:17:49] 2025-10-10 21:17:39,643 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:17:49] 2025-10-10 21:17:40,902 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139973683869504)>', '<ExcThread(monitor, started 139973068035840)>']
[2025-10-10 17:17:49] 2025-10-10 21:17:45,927 | INFO     | all workflow threads have been joined
[2025-10-10 17:17:49] 2025-10-10 21:17:45,928 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:17:49] 2025-10-10 21:17:45,928 | INFO     | traces error code: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:45,928 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:17:49] 2025-10-10 21:17:49,502 | INFO     | PID=1586 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-10-10 17:17:49] 2025-10-10 21:17:49,503 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:17:49] 2025-10-10 21:17:49,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:17:49] 2025-10-10 21:17:49,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:17:49] 2025-10-10 21:17:49,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:17:49] 2025-10-10 21:17:49,504 | INFO     | [monitor] control thread has ended
[2025-10-10 17:17:49] 2025-10-10 21:17:49,593 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:17:49] 2025-10-10 21:17:49,596 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:17:49] 2025-10-10 21:17:49,600 [wrapper] pilotpid: 1586
[2025-10-10 17:17:49] 2025-10-10 21:17:49,603 [wrapper] Pilot exit status: 0
[2025-10-10 17:17:49] 2025-10-10 21:17:49,617 [wrapper] pandaids: 6836603282
[2025-10-10 17:17:49] 2025-10-10 21:17:49,655 [wrapper] cleanup supervisor_pilot 30920 1587
[2025-10-10 17:17:49] 2025-10-10 21:17:49,659 [wrapper] Test setup, not cleaning
[2025-10-10 17:17:49] 2025-10-10 21:17:49,662 [wrapper] apfmon messages muted
[2025-10-10 17:17:49] 2025-10-10 21:17:49,666 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:17:49] 2025-10-10 21:17:49,670 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:17:49]  *** Error codes and diagnostics ***
[2025-10-10 17:17:49]     "exeErrorCode": 0,
[2025-10-10 17:17:49]     "exeErrorDiag": "",
[2025-10-10 17:17:49]     "pilotErrorCode": 0,
[2025-10-10 17:17:49]     "pilotErrorDiag": "",
[2025-10-10 17:17:49]  *** Listing of results directory ***
[2025-10-10 17:17:49] total 420528
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas    557409 Oct  8 18:57 pilot3.tar.gz
[2025-10-10 17:17:49] -rwx------ 1 boincer umatlas     36292 Oct  8 19:03 runpilot2-wrapper.sh
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas      5112 Oct  8 19:05 queuedata.json
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas       100 Oct 10 16:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:17:49] -rwxr-xr-x 1 boincer umatlas      7986 Oct 10 16:00 run_atlas
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas       105 Oct 10 16:00 job.xml
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas 222568728 Oct 10 16:00 EVNT.46676267._000386.pool.root.1
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 16:00 start_atlas.sh
[2025-10-10 17:17:49] drwxrwx--x 2 boincer umatlas      4096 Oct 10 16:00 shared
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 16:00 input.tar.gz
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas         0 Oct 10 16:00 boinc_lockfile
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas      2548 Oct 10 16:00 pandaJob.out
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas    975541 Oct 10 16:00 agis_schedconf.cvmfs.json
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas   1560580 Oct 10 16:00 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:17:49] drwx------ 5 boincer umatlas      4096 Oct 10 16:00 pilot3
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas      5953 Oct 10 17:13 init_data.xml
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas 202063022 Oct 10 17:16 HITS.46676269._009552.pool.root.1
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas       529 Oct 10 17:16 boinc_task_state.xml
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas      1049 Oct 10 17:17 memory_monitor_summary.json
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas    380254 Oct 10 17:17 log.46676269._009552.job.log.tgz.1
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas      7850 Oct 10 17:17 heartbeat.json
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas      8192 Oct 10 17:17 boinc_mmap_file
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas        27 Oct 10 17:17 wrapper_checkpoint.txt
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas       744 Oct 10 17:17 pilotlog.txt
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas        95 Oct 10 17:17 pilot_heartbeat.json
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas    665553 Oct 10 17:17 log.46676269._009552.job.log.1
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas       357 Oct 10 17:17 output.list
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas       620 Oct 10 17:17 runtime_log
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas   1064960 Oct 10 17:17 result.tar.gz
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas      8705 Oct 10 17:17 runtime_log.err
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas       659 Oct 10 17:17 DPQODmWNsQ8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIcYNDmBWA8fn.diag
[2025-10-10 17:17:49] -rw-r--r-- 1 boincer umatlas     22612 Oct 10 17:17 stderr.txt
[2025-10-10 17:17:49] HITS file was successfully produced:
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas 202063022 Oct 10 17:16 shared/HITS.pool.root.1
[2025-10-10 17:17:49]  *** Contents of shared directory: ***
[2025-10-10 17:17:49] total 416304
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas 222568728 Oct 10 16:00 ATLAS.root_0
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas     15120 Oct 10 16:00 start_atlas.sh
[2025-10-10 17:17:49] -rw-r--r-- 2 boincer umatlas    569678 Oct 10 16:00 input.tar.gz
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas 202063022 Oct 10 17:16 HITS.pool.root.1
[2025-10-10 17:17:49] -rw------- 1 boincer umatlas   1064960 Oct 10 17:17 result.tar.gz
17:17:50 (30192): run_atlas exited; CPU time 49892.267147
17:17:50 (30192): called boinc_finish(0)

</stderr_txt>
]]>

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