Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 12:41:12 (13964): vboxwrapper version 26210
2025-10-11 12:41:12 (13964): BOINC client version: 7.16.20
2025-10-11 12:41:13 (13964): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2025-10-11 12:41:13 (13964): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 12:41:13 (13964): Create VM. (boinc_74255caafd378fe8, slot#1)
2025-10-11 12:41:14 (13964): Setting Memory Size for VM. (4600MB)
2025-10-11 12:41:14 (13964): Setting CPU Count for VM. (6)
2025-10-11 12:41:14 (13964): Setting Chipset Options for VM.
2025-10-11 12:41:15 (13964): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 12:41:15 (13964): Setting Boot Options for VM.
2025-10-11 12:41:16 (13964): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 12:41:16 (13964): Enabling VM Network Access.
2025-10-11 12:41:16 (13964): Disabling USB Support for VM.
2025-10-11 12:41:16 (13964): Disabling COM Port Support for VM.
2025-10-11 12:41:17 (13964): Disabling LPT Port Support for VM.
2025-10-11 12:41:17 (13964): Disabling Audio Support for VM.
2025-10-11 12:41:17 (13964): Disabling Clipboard Support for VM.
2025-10-11 12:41:17 (13964): Disabling Drag and Drop Support for VM.
2025-10-11 12:41:18 (13964): Adding storage controller(s) to VM.
2025-10-11 12:41:18 (13964): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 12:41:18 (13964): Adding VirtualBox Guest Additions to VM.
2025-10-11 12:41:19 (13964): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 12:41:19 (13964): forwarding host port 61767 to guest port 80
2025-10-11 12:41:19 (13964): Enabling remote desktop for VM.
2025-10-11 12:41:19 (13964): Required extension pack not installed, remote desktop not enabled.
2025-10-11 12:41:19 (13964): Enabling shared directory for VM.
2025-10-11 12:41:20 (13964): Starting VM using VBoxManage interface. (boinc_74255caafd378fe8, slot#1)
2025-10-11 12:41:27 (13964): Successfully started VM. (PID = '7600')
2025-10-11 12:41:27 (13964): Reporting VM Process ID to BOINC.
2025-10-11 12:41:27 (13964): Guest Log: BIOS: VirtualBox 6.1.40
2025-10-11 12:41:27 (13964): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 12:41:27 (13964): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 12:41:27 (13964): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 12:41:27 (13964): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 12:41:27 (13964): Detected: Web Application Enabled (http://localhost:61767)
2025-10-11 12:41:27 (13964): Preference change detected
2025-10-11 12:41:27 (13964): Setting CPU throttle for VM. (85%)
2025-10-11 12:41:27 (13964): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 12:41:29 (13964): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 12:41:29 (13964): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 12:41:33 (13964): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 12:41:33 (13964): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 12:41:33 (13964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 12:41:41 (13964): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 12:41:41 (13964): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 12:41:52 (13964): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000246 main     Log opened 2025-10-11T12:41:51.272612000Z
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000429 main     OS Product: Linux
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000486 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000563 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000626 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000628 main     Process ID: 1339
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.000630 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 12:41:52 (13964): Guest Log: 00:00:00.002238 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 12:41:52 (13964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 12:41:52 (13964): Guest Log: [INFO] Mounting shared directory
2025-10-11 12:41:53 (13964): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 12:42:02 (13964): Guest Log: 00:00:10.006826 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 720 211 000ns (GuestNow=1 760 154 122 556 970 000 ns GuestLast=1 760 186 511 277 181 000 ns fSetTimeLastLoop=true )
2025-10-11 12:42:53 (13964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 12:42:53 (13964): Guest Log: [INFO] Detected branch: prod
2025-10-11 12:42:53 (13964): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 12:42:53 (13964): Guest Log: Copying input files
2025-10-11 12:42:56 (13964): Guest Log: Copied input files into RunAtlas.
2025-10-11 12:42:56 (13964): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 12:42:56 (13964): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 12:42:56 (13964): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 12:42:56 (13964): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 12:43:06 (13964): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 12:43:07 (13964): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 12:43:07 (13964): Guest Log: 2.6.3.0 1638 0 30184 151571 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 12:43:08 (13964): Guest Log: copied the webapp to /var/www
2025-10-11 12:43:08 (13964): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-11 12:43:08 (13964): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-11 12:43:09 (13964): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 12:43:09 (13964): Guest Log:  *** Starting ATLAS job. (PandaID=6837631316 taskID=46676269) ***
2025-10-11 13:02:53 (13964): Preference change detected
2025-10-11 13:02:53 (13964): Setting CPU throttle for VM. (85%)
2025-10-11 13:02:53 (13964): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 13:32:09 (13964): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 13:32:19 (13964): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 13:32:49 (13964): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 13:33:09 (13964): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 13:33:19 (13964): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 13:33:49 (13964): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 14:22:40 (13964): Status Report: Elapsed Time: '6000.259542'
2025-10-11 14:22:40 (13964): Status Report: CPU Time: '21040.531250'
2025-10-11 16:02:46 (13964): Status Report: Elapsed Time: '12000.259542'
2025-10-11 16:02:46 (13964): Status Report: CPU Time: '48200.390625'
2025-10-11 17:42:53 (13964): Status Report: Elapsed Time: '18000.259542'
2025-10-11 17:42:53 (13964): Status Report: CPU Time: '75359.937500'
2025-10-11 19:23:00 (13964): Status Report: Elapsed Time: '24000.259542'
2025-10-11 19:23:00 (13964): Status Report: CPU Time: '102461.546875'
2025-10-11 20:41:15 (13964): Guest Log:  *** Job finished ***
2025-10-11 20:41:15 (13964): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:08,093 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:12,142 | INFO     | [data] queue_monitor thread has finished
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:22,248 | INFO     | [monitor] cgroup control has ended
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:22,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140403698980672)>', '<ExcThread(monitor, started 140403235854080)>']
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:22,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:22,726 | INFO     | [monitor] control thread has ended
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,602 | INFO     | all workflow threads have been joined
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,602 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,602 | INFO     | traces error code: 0
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,603 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,763 [wrapper] ==== pilot stdout END ====
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,771 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,779 [wrapper] pilotpid: 6074
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:27,787 [wrapper] Pilot exit status: 0
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,090 [wrapper] pandaids: 6837631316
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,148 [wrapper] cleanup supervisor_pilot 29240 6075
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,169 [wrapper] Test setup, not cleaning
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,178 [wrapper] apfmon messages muted
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,186 [wrapper] ==== wrapper stdout END ====
2025-10-11 20:41:15 (13964): Guest Log: 2025-10-11 11:40:28,194 [wrapper] ==== wrapper stderr END ====
2025-10-11 20:41:15 (13964): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 20:41:15 (13964): Guest Log:     "exeErrorCode": 0,
2025-10-11 20:41:15 (13964): Guest Log:     "exeErrorDiag": "",
2025-10-11 20:41:15 (13964): Guest Log:     "pilotErrorCode": 0,
2025-10-11 20:41:15 (13964): Guest Log:     "pilotErrorDiag": "",
2025-10-11 20:41:15 (13964): Guest Log:  *** Listing of results directory ***
2025-10-11 20:41:15 (13964): Guest Log: total 199316
2025-10-11 20:41:15 (13964): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 14:05 pilot3.tar.gz
2025-10-11 20:41:15 (13964): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 14:14 runpilot2-wrapper.sh
2025-10-11 20:41:15 (13964): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 14:14 queuedata.json
2025-10-11 20:41:15 (13964): Guest Log: -rwxr-xr-x. 1 atlas atlas      5945 Oct 11 03:42 init_data.xml
2025-10-11 20:41:15 (13964): Guest Log: -rwxr-xr-x. 1 atlas atlas    569680 Oct 11 03:42 input.tar.gz
2025-10-11 20:41:15 (13964): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 11 03:42 start_atlas.sh
2025-10-11 20:41:15 (13964): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 11 03:42 EVNT.46676267._001614.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 20:41:15 (13964): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 11 03:43 pandaJob.out
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas    975509 Oct 11 03:46 agis_schedconf.cvmfs.json
2025-10-11 20:41:15 (13964): Guest Log: drwx------. 5 atlas atlas      4096 Oct 11 03:46 pilot3
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas 191924708 Oct 11 11:38 HITS.46676269._039794.pool.root.1
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 11:39 pilot_heartbeat.json
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 11 11:39 memory_monitor_summary.json
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 11:39 agis_ddmendpoints.agis.ALL.json
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas    621421 Oct 11 11:39 log.46676269._039794.job.log.tgz.1
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas      7828 Oct 11 11:40 heartbeat.json
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas      4612 Oct 11 11:40 pilotlog.txt
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas   3543634 Oct 11 11:40 log.46676269._039794.job.log.1
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 11:40 output.list
2025-10-11 20:41:15 (13964): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 11:40 runtime_log
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas   4188160 Oct 11 11:40 result.tar.gz
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas       673 Oct 11 11:40 u6BMDm23SR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmQYdNDmSQPSWo.diag
2025-10-11 20:41:15 (13964): Guest Log: -rw-r--r--. 1 atlas atlas      8679 Oct 11 11:40 runtime_log.err
2025-10-11 20:41:15 (13964): Guest Log: Looking for outputfile HITS.46676269._039794.pool.root.1
2025-10-11 20:41:15 (13964): Guest Log: HITS file was successfully produced
2025-10-11 20:41:15 (13964): Guest Log: -rw-------. 1 atlas atlas 191924708 Oct 11 11:38 /home/atlas/RunAtlas/HITS.46676269._039794.pool.root.1
2025-10-11 20:41:17 (13964): Guest Log: Successfully finished the ATLAS job!
2025-10-11 20:41:17 (13964): Guest Log: Copying the results back to the shared directory!
2025-10-11 20:41:17 (13964): Guest Log:  *** Contents of shared directory: ***
2025-10-11 20:41:17 (13964): Guest Log: total 406972
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root 220021144 Oct 11 03:41 ATLAS.root_0
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root 191924708 Oct 11  2025 HITS.pool.root.1
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root      5945 Oct 11 03:41 init_data.xml
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root    569680 Oct 10 19:47 input.tar.gz
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root   4188160 Oct 11  2025 result.tar.gz
2025-10-11 20:41:17 (13964): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 19:47 start_atlas.sh
2025-10-11 20:41:17 (13964): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 20:41:17 (13964): VM Completion File Detected.
2025-10-11 20:41:17 (13964): Powering off VM.
2025-10-11 20:41:18 (13964): Successfully stopped VM.
2025-10-11 20:41:18 (13964): Deregistering VM. (boinc_74255caafd378fe8, slot#1)
2025-10-11 20:41:18 (13964): Removing network bandwidth throttle group from VM.
2025-10-11 20:41:18 (13964): Removing VM from VirtualBox.
2025-10-11 20:41:23 (13964): called boinc_finish(0)

</stderr_txt>
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