Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-11 04:47:25 (23392): vboxwrapper version 26210
2025-10-11 04:47:25 (23392): BOINC client version: 7.16.20
2025-10-11 04:47:25 (23392): Detected: VirtualBox VboxManage Interface (Version: 6.1.40)
2025-10-11 04:47:26 (23392): Successfully copied 'init_data.xml' to the shared directory.
2025-10-11 04:47:26 (23392): Create VM. (boinc_29d68523f4ce4bee, slot#1)
2025-10-11 04:47:26 (23392): Setting Memory Size for VM. (4600MB)
2025-10-11 04:47:27 (23392): Setting CPU Count for VM. (6)
2025-10-11 04:47:27 (23392): Setting Chipset Options for VM.
2025-10-11 04:47:27 (23392): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-11 04:47:27 (23392): Setting Boot Options for VM.
2025-10-11 04:47:28 (23392): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-11 04:47:28 (23392): Enabling VM Network Access.
2025-10-11 04:47:28 (23392): Disabling USB Support for VM.
2025-10-11 04:47:29 (23392): Disabling COM Port Support for VM.
2025-10-11 04:47:29 (23392): Disabling LPT Port Support for VM.
2025-10-11 04:47:29 (23392): Disabling Audio Support for VM.
2025-10-11 04:47:30 (23392): Disabling Clipboard Support for VM.
2025-10-11 04:47:30 (23392): Disabling Drag and Drop Support for VM.
2025-10-11 04:47:30 (23392): Adding storage controller(s) to VM.
2025-10-11 04:47:30 (23392): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-11 04:47:31 (23392): Adding VirtualBox Guest Additions to VM.
2025-10-11 04:47:31 (23392): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-11 04:47:31 (23392): forwarding host port 58005 to guest port 80
2025-10-11 04:47:32 (23392): Enabling remote desktop for VM.
2025-10-11 04:47:32 (23392): Required extension pack not installed, remote desktop not enabled.
2025-10-11 04:47:32 (23392): Enabling shared directory for VM.
2025-10-11 04:47:32 (23392): Starting VM using VBoxManage interface. (boinc_29d68523f4ce4bee, slot#1)
2025-10-11 04:47:42 (23392): Successfully started VM. (PID = '16532')
2025-10-11 04:47:42 (23392): Reporting VM Process ID to BOINC.
2025-10-11 04:47:42 (23392): Guest Log: BIOS: VirtualBox 6.1.40
2025-10-11 04:47:42 (23392): Guest Log: CPUID EDX: 0x178bfbff
2025-10-11 04:47:42 (23392): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-11 04:47:42 (23392): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-11 04:47:42 (23392): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-11 04:47:42 (23392): Detected: Web Application Enabled (http://localhost:58005)
2025-10-11 04:47:42 (23392): Preference change detected
2025-10-11 04:47:42 (23392): Setting CPU throttle for VM. (85%)
2025-10-11 04:47:42 (23392): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-11 04:47:44 (23392): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-11 04:47:44 (23392): Guest Log: BIOS: Booting from Hard Disk...
2025-10-11 04:47:49 (23392): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-11 04:47:49 (23392): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-11 04:47:49 (23392): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-11 04:47:58 (23392): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-11 04:47:58 (23392): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-11 04:48:10 (23392): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000233 main     Log opened 2025-10-11T04:48:08.284128000Z
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000368 main     OS Product: Linux
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000500 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000551 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000598 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000600 main     Process ID: 1355
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.000601 main     Package type: LINUX_64BITS_GENERIC
2025-10-11 04:48:10 (23392): Guest Log: 00:00:00.002264 main     5.2.32 r132073 started. Verbose level = 0
2025-10-11 04:48:10 (23392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-11 04:48:10 (23392): Guest Log: [INFO] Mounting shared directory
2025-10-11 04:48:10 (23392): Guest Log: [INFO] Checking for init_data.xml
2025-10-11 04:48:19 (23392): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-11 04:48:19 (23392): Guest Log: [INFO] Detected branch: prod
2025-10-11 04:48:20 (23392): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-11 04:48:20 (23392): Guest Log: Copying input files
2025-10-11 04:48:20 (23392): Guest Log: 00:00:10.036782 timesync vgsvcTimeSyncWorker: Radical guest time change: -32 388 401 735 000ns (GuestNow=1 760 125 699 894 945 000 ns GuestLast=1 760 158 088 296 680 000 ns fSetTimeLastLoop=true )
2025-10-11 04:48:22 (23392): Guest Log: Copied input files into RunAtlas.
2025-10-11 04:48:22 (23392): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-11 04:48:22 (23392): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-11 04:48:22 (23392): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-11 04:48:22 (23392): Guest Log: Further information can be found at the LHC@home message board.
2025-10-11 04:48:35 (23392): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-11 04:48:36 (23392): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-11 04:48:36 (23392): Guest Log: 2.6.3.0 1634 0 32220 151559 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-11 04:48:37 (23392): Guest Log: copied the webapp to /var/www
2025-10-11 04:48:37 (23392): Guest Log: ATHENA_PROC_NUMBER=6
2025-10-11 04:48:37 (23392): Guest Log: ATHENA_CORE_NUMBER=6
2025-10-11 04:48:38 (23392): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-11 04:48:38 (23392): Guest Log:  *** Starting ATLAS job. (PandaID=6837632171 taskID=46676269) ***
2025-10-11 06:27:47 (23392): Status Report: Elapsed Time: '6000.000000'
2025-10-11 06:27:47 (23392): Status Report: CPU Time: '22651.500000'
2025-10-11 07:35:00 (23392): VM state change detected. (old = 'running', new = 'paused')
2025-10-11 07:49:26 (23392): VM state change detected. (old = 'paused', new = 'running')
2025-10-11 08:22:23 (23392): Status Report: Elapsed Time: '12000.000000'
2025-10-11 08:22:23 (23392): Status Report: CPU Time: '50276.125000'
2025-10-11 10:02:30 (23392): Status Report: Elapsed Time: '18000.000000'
2025-10-11 10:02:30 (23392): Status Report: CPU Time: '79245.546875'
2025-10-11 11:42:36 (23392): Status Report: Elapsed Time: '24000.000000'
2025-10-11 11:42:36 (23392): Status Report: CPU Time: '108124.406250'
2025-10-11 12:40:58 (23392): Guest Log:  *** Job finished ***
2025-10-11 12:40:58 (23392): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:29,204 | INFO     | all workflow threads have been joined
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:29,204 | INFO     | end of generic workflow (traces error code: 0)
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:29,204 | INFO     | traces error code: 0
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:29,205 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,701 | INFO     | PID=6046 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,702 | INFO     | found 0 job(s) in 20 queues
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,702 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,702 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,702 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,702 | INFO     | [monitor] control thread has ended
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,828 [wrapper] ==== pilot stdout END ====
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,835 [wrapper] ==== wrapper stdout RESUME ====
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,842 [wrapper] pilotpid: 6046
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:38,850 [wrapper] Pilot exit status: 0
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,191 [wrapper] pandaids: 6837632171
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,241 [wrapper] cleanup supervisor_pilot 26989 6047
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,256 [wrapper] Test setup, not cleaning
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,263 [wrapper] apfmon messages muted
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,271 [wrapper] ==== wrapper stdout END ====
2025-10-11 12:40:58 (23392): Guest Log: 2025-10-11 03:26:39,278 [wrapper] ==== wrapper stderr END ====
2025-10-11 12:40:58 (23392): Guest Log:  *** Error codes and diagnostics ***
2025-10-11 12:40:58 (23392): Guest Log:     "exeErrorCode": 0,
2025-10-11 12:40:58 (23392): Guest Log:     "exeErrorDiag": "",
2025-10-11 12:40:58 (23392): Guest Log:     "pilotErrorCode": 0,
2025-10-11 12:40:58 (23392): Guest Log:     "pilotErrorDiag": "",
2025-10-11 12:40:58 (23392): Guest Log:  *** Listing of results directory ***
2025-10-11 12:40:58 (23392): Guest Log: total 199668
2025-10-11 12:40:58 (23392): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 14:05 pilot3.tar.gz
2025-10-11 12:40:58 (23392): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 14:16 runpilot2-wrapper.sh
2025-10-11 12:40:58 (23392): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 14:16 queuedata.json
2025-10-11 12:40:58 (23392): Guest Log: -rwxr-xr-x. 1 atlas atlas      5945 Oct 10 19:48 init_data.xml
2025-10-11 12:40:58 (23392): Guest Log: -rwxr-xr-x. 1 atlas atlas    569676 Oct 10 19:48 input.tar.gz
2025-10-11 12:40:58 (23392): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 19:48 start_atlas.sh
2025-10-11 12:40:58 (23392): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 19:48 EVNT.46676267._001617.pool.root.1 -> /data/./ATLAS.root_0
2025-10-11 12:40:58 (23392): Guest Log: -rw-r--r--. 1 atlas atlas      2550 Oct 10 19:48 pandaJob.out
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas    975541 Oct 10 19:50 agis_schedconf.cvmfs.json
2025-10-11 12:40:58 (23392): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 19:50 pilot3
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas 192615160 Oct 11 03:24 HITS.46676269._039852.pool.root.1
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas      1030 Oct 11 03:25 memory_monitor_summary.json
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 11 03:25 agis_ddmendpoints.agis.ALL.json
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas    585023 Oct 11 03:25 log.46676269._039852.job.log.tgz.1
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas        95 Oct 11 03:25 pilot_heartbeat.json
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas      7826 Oct 11 03:26 heartbeat.json
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas       744 Oct 11 03:26 pilotlog.txt
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas   3424675 Oct 11 03:26 log.46676269._039852.job.log.1
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas       357 Oct 11 03:26 output.list
2025-10-11 12:40:58 (23392): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 11 03:26 runtime_log
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas   4024320 Oct 11 03:26 result.tar.gz
2025-10-11 12:40:58 (23392): Guest Log: -rw-r--r--. 1 atlas atlas      8679 Oct 11 03:26 runtime_log.err
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas       673 Oct 11 03:26 Nn0NDmz5SR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmeYdNDmxmVRHm.diag
2025-10-11 12:40:58 (23392): Guest Log: Looking for outputfile HITS.46676269._039852.pool.root.1
2025-10-11 12:40:58 (23392): Guest Log: HITS file was successfully produced
2025-10-11 12:40:58 (23392): Guest Log: -rw-------. 1 atlas atlas 192615160 Oct 11 03:24 /home/atlas/RunAtlas/HITS.46676269._039852.pool.root.1
2025-10-11 12:41:01 (23392): Guest Log: Successfully finished the ATLAS job!
2025-10-11 12:41:01 (23392): Guest Log: Copying the results back to the shared directory!
2025-10-11 12:41:01 (23392): Guest Log:  *** Contents of shared directory: ***
2025-10-11 12:41:01 (23392): Guest Log: total 409408
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root 221989786 Oct 10 19:47 ATLAS.root_0
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root 192615160 Oct 11  2025 HITS.pool.root.1
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root      5945 Oct 10 19:47 init_data.xml
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root    569676 Oct 10 19:45 input.tar.gz
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root   4024320 Oct 11  2025 result.tar.gz
2025-10-11 12:41:01 (23392): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 19:45 start_atlas.sh
2025-10-11 12:41:01 (23392): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-11 12:41:01 (23392): VM Completion File Detected.
2025-10-11 12:41:01 (23392): Powering off VM.
2025-10-11 12:41:02 (23392): Successfully stopped VM.
2025-10-11 12:41:02 (23392): Deregistering VM. (boinc_29d68523f4ce4bee, slot#1)
2025-10-11 12:41:02 (23392): Removing network bandwidth throttle group from VM.
2025-10-11 12:41:03 (23392): Removing VM from VirtualBox.
2025-10-11 12:41:08 (23392): called boinc_finish(0)

</stderr_txt>
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