Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:32:38 (2188188): wrapper (7.7.26015): starting
15:32:38 (2188188): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 15:32:38] Arguments: --nthreads 11
[2025-10-10 15:32:38] Threads: 11
[2025-10-10 15:32:38] Checking for CVMFS
[2025-10-10 15:32:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 15:32:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 15:32:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 15:32:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 15:32:40] 2.13.2.0 2754702 126789 335652 151559 1 468 28414021 32935937 59443 16776704 0 803736460 99.686 671171757 33521 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 15:32:40] CVMFS is ok
[2025-10-10 15:32:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 15:32:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 15:32:40] Further information can be found at the LHC@home message board.
[2025-10-10 15:32:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 15:32:40] Checking for apptainer binary...
[2025-10-10 15:32:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 15:32:40] Running /usr/bin/apptainer --version
[2025-10-10 15:32:40] apptainer version 1.4.3-1.el9
[2025-10-10 15:32:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 15:32:41] c7-9-14.aglt2.org
[2025-10-10 15:32:41] apptainer works
[2025-10-10 15:32:41] Set ATHENA_PROC_NUMBER=11
[2025-10-10 15:32:41] Set ATHENA_CORE_NUMBER=11
[2025-10-10 15:32:41] Starting ATLAS job with PandaID=6837598342
[2025-10-10 15:32:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:14:03]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:14:03] 2025-10-10 21:12:36,551 | INFO     | monitor loop #367: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:36,552 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:36,690 | INFO     | time since job start (5931s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:38,697 | INFO     | time since job start (5933s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:39,083 | INFO     | monitor loop #368: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:39,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:40,705 | INFO     | time since job start (5935s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:41,605 | INFO     | monitor loop #369: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:41,606 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:42,715 | INFO     | time since job start (5937s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:44,116 | INFO     | monitor loop #370: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:44,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:44,722 | INFO     | time since job start (5939s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:46,620 | INFO     | monitor loop #371: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:46,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:46,731 | INFO     | time since job start (5941s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:48,747 | INFO     | time since job start (5943s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:49,125 | INFO     | monitor loop #372: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:49,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:50,754 | INFO     | time since job start (5945s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:51,638 | INFO     | monitor loop #373: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:51,639 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:54,175 | INFO     | monitor loop #374: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:54,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:54,515 | INFO     | PID=2217071 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 17:14:03] 2025-10-10 21:12:54,515 | INFO     | .. there are 91 such processes running
[2025-10-10 17:14:03] 2025-10-10 21:12:55,531 | INFO     | time since job start (5950s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:56,680 | INFO     | monitor loop #375: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:56,680 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:57,541 | INFO     | time since job start (5952s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,184 | INFO     | monitor loop #376: job 0:6837598342 is in state 'finished'
[2025-10-10 17:14:03] 2025-10-10 21:12:59,185 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,291 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 17:14:03] 2025-10-10 21:12:59,300 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9761953125085
[2025-10-10 17:14:03] 2025-10-10 21:12:59,325 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6837598342/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,326 | INFO     | extracted standard info from prmon json
[2025-10-10 17:14:03] 2025-10-10 21:12:59,326 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:14:03] 2025-10-10 21:12:59,326 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:14:03] 2025-10-10 21:12:59,326 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:14:03] 2025-10-10 21:12:59,326 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:14:03] 2025-10-10 21:12:59,331 | INFO     | fitting pss+swap vs Time
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | sum of square deviations: 211271185.81818137
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | sum of deviations: 2722642418.3636355
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | mean x: 1760127924.5454545
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | mean y: 2278962.409090909
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | -- intersect: -22680411677.84669
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | intersect: -22680411677.84669
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | chi2: 0.33298227254534113
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | -- intersect: -22680411677.84669
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | current memory leak: 12.89 B/s (using 88 data points, chi2=0.33)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,332 | INFO     | could have reported an average CPU frequency of 3799 MHz (7 samples)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | ..............................
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . Timing measurements:
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . get job = 0 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . initial setup = 3 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . payload setup = 37 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . stage-in = 0 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . payload execution = 5795 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . stage-out = 2 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | . log creation = 0 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,333 | INFO     | ..............................
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | 
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | job summary report
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | --------------------------------------------------
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | PanDA job id: 6837598342
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | task id: 46676269
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | errors: (none)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | pilot state: finished 
[2025-10-10 17:14:03] 2025-10-10 21:12:59,439 | INFO     | transexitcode: 0
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | exeerrorcode: 0
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | exeerrordiag: 
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | exitcode: 0
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | exitmsg: OK
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | cpuconsumptiontime: 23901 s
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | nevents: 400
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | neventsw: 0
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | pid: 2261497
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | pgrp: 2261497
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | corecount: 11
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | event service: False
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | sizes: {0: 2348857, 11: 2348857, 22: 2348885, 32: 2348913, 33: 2349203, 43: 2349259, 5837: 2376007, 5839: 2385005, 5843: 2385061, 5882: 2385255}
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | --------------------------------------------------
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | 
[2025-10-10 17:14:03] 2025-10-10 21:12:59,440 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-10-10 17:14:03] 2025-10-10 21:12:59,551 | INFO     | time since job start (5954s) is within the limit (172800.0s)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,710 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,710 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,710 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,710 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | job 6837598342 has completed (purged errors)
[2025-10-10 17:14:03] 2025-10-10 21:12:59,711 | INFO     | overall cleanup function is called
[2025-10-10 17:14:03] 2025-10-10 21:13:00,729 | INFO     | --- collectZombieJob: --- 10, [2261497]
[2025-10-10 17:14:03] 2025-10-10 21:13:00,730 | INFO     | zombie collector waiting for pid 2261497
[2025-10-10 17:14:03] 2025-10-10 21:13:00,730 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:14:03] 2025-10-10 21:13:00,730 | INFO     | collected zombie processes
[2025-10-10 17:14:03] 2025-10-10 21:13:00,730 | INFO     | will attempt to kill all subprocesses of pid=2261497
[2025-10-10 17:14:03] 2025-10-10 21:13:02,258 | INFO     | process IDs to be killed: [2261497] (in reverse order)
[2025-10-10 17:14:03] 2025-10-10 21:13:03,016 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:14:03] 2025-10-10 21:13:03,016 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:14:03] 2025-10-10 21:13:03,067 | INFO     | did not find any defunct processes belonging to 2261497
[2025-10-10 17:14:03] 2025-10-10 21:13:03,179 | INFO     | did not find any defunct processes belonging to 2261497
[2025-10-10 17:14:03] 2025-10-10 21:13:03,179 | INFO     | ready for new job
[2025-10-10 17:14:03] 2025-10-10 21:13:03,179 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:14:03] 2025-10-10 21:13:03,180 | INFO     | ***************************************
[2025-10-10 17:14:03] 2025-10-10 21:13:03,180 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:14:03] 2025-10-10 21:13:03,181 | INFO     | ***************************************
[2025-10-10 17:14:03] 2025-10-10 21:13:03,181 | INFO     | 
[2025-10-10 17:14:03] 2025-10-10 21:13:03,203 | INFO     | architecture information:
[2025-10-10 17:14:03] 2025-10-10 21:13:03,206 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:14:03] 2025-10-10 21:13:03,304 | INFO     | cat /etc/os-release:
[2025-10-10 17:14:03] NAME="CentOS Linux"
[2025-10-10 17:14:03] VERSION="7 (Core)"
[2025-10-10 17:14:03] ID="centos"
[2025-10-10 17:14:03] ID_LIKE="rhel fedora"
[2025-10-10 17:14:03] VERSION_ID="7"
[2025-10-10 17:14:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:14:03] ANSI_COLOR="0;31"
[2025-10-10 17:14:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:14:03] HOME_URL="https://www.centos.org/"
[2025-10-10 17:14:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:14:03] 
[2025-10-10 17:14:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:14:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:14:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:14:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:14:03] 
[2025-10-10 17:14:03] 2025-10-10 21:13:03,304 | INFO     | ***************************************
[2025-10-10 17:14:03] 2025-10-10 21:13:03,810 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-10-10 17:14:03] 2025-10-10 21:13:03,867 | INFO     | sufficient remaining disk space (73572286464 B)
[2025-10-10 17:14:03] 2025-10-10 21:13:03,867 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:14:03] 2025-10-10 21:13:03,867 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:14:03] 2025-10-10 21:13:03,867 | INFO     | update_server=False
[2025-10-10 17:14:03] 2025-10-10 21:13:03,867 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:14:03] 2025-10-10 21:13:04,157 | INFO     | all data control threads have been joined
[2025-10-10 17:14:03] 2025-10-10 21:13:04,216 | INFO     | all payload control threads have been joined
[2025-10-10 17:14:03] 2025-10-10 21:13:04,217 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 17:14:03] 2025-10-10 21:13:04,218 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 17:14:03] 2025-10-10 21:13:04,218 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:14:03] 2025-10-10 21:13:04,218 | INFO     | will abort loop
[2025-10-10 17:14:03] 2025-10-10 21:13:04,456 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:14:03] 2025-10-10 21:13:04,462 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:14:03] 2025-10-10 21:13:04,874 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,075 | INFO     | all job control threads have been joined
[2025-10-10 17:14:03] 2025-10-10 21:13:05,088 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,163 | INFO     | [data] control thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,208 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,222 | INFO     | [payload] control thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,224 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,408 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,414 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:05,462 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:06,081 | INFO     | [job] control thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:06,163 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:06,164 | INFO     | [job] validate thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:06,251 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:06,403 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:14:03] 2025-10-10 21:13:06,469 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:10,427 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:14,042 | INFO     | job.realtimelogging is not enabled
[2025-10-10 17:14:03] 2025-10-10 21:13:15,048 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:14:03] 2025-10-10 21:13:35,144 | INFO     | PID=2217071 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 17:14:03] 2025-10-10 21:13:35,144 | INFO     | .. there are 91 such processes running
[2025-10-10 17:14:03] 2025-10-10 21:13:35,144 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:14:03] 2025-10-10 21:13:35,145 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:14:03] 2025-10-10 21:13:35,145 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:14:03] 2025-10-10 21:13:55,213 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:14:03] 2025-10-10 21:13:56,221 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140053385639744)>', '<ExcThread(monitor, started 140052894045952)>']
[2025-10-10 17:14:03] 2025-10-10 21:13:56,336 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:14:03] 2025-10-10 21:13:56,337 | INFO     | [monitor] control thread has ended
[2025-10-10 17:14:03] 2025-10-10 21:14:01,253 | INFO     | all workflow threads have been joined
[2025-10-10 17:14:03] 2025-10-10 21:14:01,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:14:03] 2025-10-10 21:14:01,254 | INFO     | traces error code: 0
[2025-10-10 17:14:03] 2025-10-10 21:14:01,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:14:03] 2025-10-10 21:14:01,698 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:14:03] 2025-10-10 21:14:01,728 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:14:03] 2025-10-10 21:14:01,747 [wrapper] pilotpid: 2217071
[2025-10-10 17:14:03] 2025-10-10 21:14:01,760 [wrapper] Pilot exit status: 0
[2025-10-10 17:14:03] 2025-10-10 21:14:01,858 [wrapper] pandaids: 6837598342
[2025-10-10 17:14:03] 2025-10-10 21:14:02,100 [wrapper] cleanup supervisor_pilot 3181779 2217072
[2025-10-10 17:14:03] 2025-10-10 21:14:02,122 [wrapper] Test setup, not cleaning
[2025-10-10 17:14:03] 2025-10-10 21:14:02,240 [wrapper] apfmon messages muted
[2025-10-10 17:14:03] 2025-10-10 21:14:02,262 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:14:03] 2025-10-10 21:14:02,292 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:14:03]  *** Error codes and diagnostics ***
[2025-10-10 17:14:03]     "exeErrorCode": 0,
[2025-10-10 17:14:03]     "exeErrorDiag": "",
[2025-10-10 17:14:03]     "pilotErrorCode": 0,
[2025-10-10 17:14:03]     "pilotErrorDiag": "",
[2025-10-10 17:14:03]  *** Listing of results directory ***
[2025-10-10 17:14:03] total 412384
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 07:46 pilot3.tar.gz
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 07:49 queuedata.json
[2025-10-10 17:14:03] -rwx------. 1 boincer umatlas     36292 Oct 10 07:52 runpilot2-wrapper.sh
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas       100 Oct 10 15:32 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:14:03] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 15:32 run_atlas
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas       105 Oct 10 15:32 job.xml
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas 220725983 Oct 10 15:32 EVNT.46676267._001540.pool.root.1
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 15:32 start_atlas.sh
[2025-10-10 17:14:03] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 15:32 shared
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 15:32 input.tar.gz
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas         0 Oct 10 15:32 boinc_lockfile
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 15:32 pandaJob.out
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas    975541 Oct 10 15:33 agis_schedconf.cvmfs.json
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas   1560580 Oct 10 15:33 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:14:03] drwx------. 5 boincer umatlas      4096 Oct 10 15:33 pilot3
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas 195335171 Oct 10 17:11 HITS.46676269._037928.pool.root.1
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas       529 Oct 10 17:11 boinc_task_state.xml
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas      1036 Oct 10 17:12 memory_monitor_summary.json
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas    391673 Oct 10 17:12 log.46676269._037928.job.log.tgz.1
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas      7160 Oct 10 17:12 init_data.xml
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas      7781 Oct 10 17:12 heartbeat.json
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas        95 Oct 10 17:13 pilot_heartbeat.json
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas      5082 Oct 10 17:14 pilotlog.txt
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas    763521 Oct 10 17:14 log.46676269._037928.job.log.1
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 17:14 boinc_mmap_file
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas        27 Oct 10 17:14 wrapper_checkpoint.txt
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas       357 Oct 10 17:14 output.list
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas       620 Oct 10 17:14 runtime_log
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas   1177600 Oct 10 17:14 result.tar.gz
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas       650 Oct 10 17:14 zp2KDm3qQR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm7EdNDm97dnam.diag
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas      8700 Oct 10 17:14 runtime_log.err
[2025-10-10 17:14:03] -rw-r--r--. 1 boincer umatlas     22321 Oct 10 17:14 stderr.txt
[2025-10-10 17:14:03] HITS file was successfully produced:
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas 195335171 Oct 10 17:11 shared/HITS.pool.root.1
[2025-10-10 17:14:03]  *** Contents of shared directory: ***
[2025-10-10 17:14:03] total 408048
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas 220725983 Oct 10 15:32 ATLAS.root_0
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 15:32 start_atlas.sh
[2025-10-10 17:14:03] -rw-r--r--. 2 boincer umatlas    569679 Oct 10 15:32 input.tar.gz
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas 195335171 Oct 10 17:11 HITS.pool.root.1
[2025-10-10 17:14:03] -rw-------. 1 boincer umatlas   1177600 Oct 10 17:14 result.tar.gz
17:14:04 (2188188): run_atlas exited; CPU time 24080.650845
17:14:04 (2188188): called boinc_finish(0)

</stderr_txt>
]]>

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