Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:40:19 (1785159): wrapper (7.7.26015): starting
06:40:19 (1785159): wrapper: running run_atlas (--nthreads 2)
[2025-10-11 06:40:19] Arguments: --nthreads 2
[2025-10-11 06:40:19] Threads: 2
[2025-10-11 06:40:19] Checking for CVMFS
[2025-10-11 06:40:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 06:40:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 06:40:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 06:40:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 06:40:19] 2.9.2.0 1267943 2246 57492 151572 2 57 31210998 36864001 0 130560 0 1364831 99.987 78483 1080 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 06:40:19] CVMFS is ok
[2025-10-11 06:40:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 06:40:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 06:40:19] Further information can be found at the LHC@home message board.
[2025-10-11 06:40:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 06:40:19] Checking for apptainer binary...
[2025-10-11 06:40:19] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 06:40:19] Running /usr/bin/apptainer --version
[2025-10-11 06:40:19] apptainer version 1.4.1-1.1
[2025-10-11 06:40:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 06:40:19] thA334a
[2025-10-11 06:40:19] apptainer works
[2025-10-11 06:40:19] Set ATHENA_PROC_NUMBER=2
[2025-10-11 06:40:19] Set ATHENA_CORE_NUMBER=2
[2025-10-11 06:40:19] Starting ATLAS job with PandaID=6837378645
[2025-10-11 06:40:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 08:48:55]  *** The last 200 lines of the pilot log: ***
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | job 6837378645 has completed (purged errors)
[2025-10-11 08:48:55] 2025-10-11 06:48:22,849 | INFO     | overall cleanup function is called
[2025-10-11 08:48:55] 2025-10-11 06:48:23,856 | INFO     | --- collectZombieJob: --- 10, [1795283]
[2025-10-11 08:48:55] 2025-10-11 06:48:23,856 | INFO     | zombie collector waiting for pid 1795283
[2025-10-11 08:48:55] 2025-10-11 06:48:23,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 08:48:55] 2025-10-11 06:48:23,856 | INFO     | collected zombie processes
[2025-10-11 08:48:55] 2025-10-11 06:48:23,856 | INFO     | will attempt to kill all subprocesses of pid=1795283
[2025-10-11 08:48:55] 2025-10-11 06:48:23,888 | INFO     | process IDs to be killed: [1795283] (in reverse order)
[2025-10-11 08:48:55] 2025-10-11 06:48:23,907 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 08:48:55] 2025-10-11 06:48:23,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 08:48:55] 2025-10-11 06:48:23,911 | INFO     | did not find any defunct processes belonging to 1795283
[2025-10-11 08:48:55] 2025-10-11 06:48:23,913 | INFO     | did not find any defunct processes belonging to 1795283
[2025-10-11 08:48:55] 2025-10-11 06:48:23,914 | INFO     | ready for new job
[2025-10-11 08:48:55] 2025-10-11 06:48:23,914 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 08:48:55] 2025-10-11 06:48:23,915 | INFO     | ***************************************
[2025-10-11 08:48:55] 2025-10-11 06:48:23,916 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 08:48:55] 2025-10-11 06:48:23,916 | INFO     | ***************************************
[2025-10-11 08:48:55] 2025-10-11 06:48:23,916 | INFO     | 
[2025-10-11 08:48:55] 2025-10-11 06:48:23,917 | INFO     | architecture information:
[2025-10-11 08:48:55] 2025-10-11 06:48:23,917 | INFO     | executing command: cat /etc/os-release
[2025-10-11 08:48:55] 2025-10-11 06:48:23,940 | INFO     | cat /etc/os-release:
[2025-10-11 08:48:55] NAME="CentOS Linux"
[2025-10-11 08:48:55] VERSION="7 (Core)"
[2025-10-11 08:48:55] ID="centos"
[2025-10-11 08:48:55] ID_LIKE="rhel fedora"
[2025-10-11 08:48:55] VERSION_ID="7"
[2025-10-11 08:48:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 08:48:55] ANSI_COLOR="0;31"
[2025-10-11 08:48:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 08:48:55] HOME_URL="https://www.centos.org/"
[2025-10-11 08:48:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 08:48:55] 
[2025-10-11 08:48:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 08:48:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 08:48:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 08:48:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 08:48:55] 
[2025-10-11 08:48:55] 2025-10-11 06:48:23,940 | INFO     | ***************************************
[2025-10-11 08:48:55] 2025-10-11 06:48:24,444 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 08:48:55] 2025-10-11 06:48:24,473 | INFO     | sufficient remaining disk space (492737396736 B)
[2025-10-11 08:48:55] 2025-10-11 06:48:24,474 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 08:48:55] 2025-10-11 06:48:24,474 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 08:48:55] 2025-10-11 06:48:24,474 | INFO     | update_server=False
[2025-10-11 08:48:55] 2025-10-11 06:48:24,474 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 08:48:55] 2025-10-11 06:48:24,475 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:48:55] 2025-10-11 06:48:24,475 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 08:48:55] 2025-10-11 06:48:24,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 08:48:55] 2025-10-11 06:48:24,476 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 08:48:55] 2025-10-11 06:48:24,476 | INFO     | aborting loop
[2025-10-11 08:48:55] 2025-10-11 06:48:24,561 | INFO     | all data control threads have been joined
[2025-10-11 08:48:55] 2025-10-11 06:48:24,814 | INFO     | all job control threads have been joined
[2025-10-11 08:48:55] 2025-10-11 06:48:25,479 | INFO     | [job] queue monitor thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:25,480 | INFO     | [job] retrieve thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:25,482 | INFO     | [job] job monitor thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:25,568 | INFO     | [data] control thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:25,600 | INFO     | all payload control threads have been joined
[2025-10-11 08:48:55] 2025-10-11 06:48:25,611 | INFO     | [payload] validate_post thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:25,820 | INFO     | [job] control thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,232 | INFO     | [job] validate thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,373 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,382 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,482 | INFO     | [data] copytool_out thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,484 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,563 | INFO     | [payload] failed_post thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,606 | INFO     | [payload] control thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:26,730 | INFO     | [data] copytool_in thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:28,484 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:35,357 | INFO     | job.realtimelogging is not enabled
[2025-10-11 08:48:55] 2025-10-11 06:48:36,363 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 08:48:55] 2025-10-11 06:48:42,573 | INFO     | [monitor] cgroup control has ended
[2025-10-11 08:48:55] 2025-10-11 06:48:44,509 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140383355225920)>', '<ExcThread(monitor, started 140382851544832)>']
[2025-10-11 08:48:55] 2025-10-11 06:48:49,535 | INFO     | all workflow threads have been joined
[2025-10-11 08:48:55] 2025-10-11 06:48:49,535 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 08:48:55] 2025-10-11 06:48:49,536 | INFO     | traces error code: 0
[2025-10-11 08:48:55] 2025-10-11 06:48:49,536 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 08:48:55] 2025-10-11 06:48:55,030 | INFO     | PID=1788870 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 08:48:55] 2025-10-11 06:48:55,031 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 08:48:55] 2025-10-11 06:48:55,031 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 08:48:55] 2025-10-11 06:48:55,031 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 08:48:55] 2025-10-11 06:48:55,031 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 08:48:55] 2025-10-11 06:48:55,031 | INFO     | [monitor] control thread has ended
[2025-10-11 08:48:55] 2025-10-11 06:48:55,070 [wrapper] ==== pilot stdout END ====
[2025-10-11 08:48:55] 2025-10-11 06:48:55,073 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 08:48:55] 2025-10-11 06:48:55,075 [wrapper] pilotpid: 1788870
[2025-10-11 08:48:55] 2025-10-11 06:48:55,077 [wrapper] Pilot exit status: 0
[2025-10-11 08:48:55] 2025-10-11 06:48:55,083 [wrapper] pandaids: 6837378645
[2025-10-11 08:48:55] 2025-10-11 06:48:55,094 [wrapper] cleanup supervisor_pilot 1809575 1788871
[2025-10-11 08:48:55] 2025-10-11 06:48:55,096 [wrapper] Test setup, not cleaning
[2025-10-11 08:48:55] 2025-10-11 06:48:55,098 [wrapper] apfmon messages muted
[2025-10-11 08:48:55] 2025-10-11 06:48:55,100 [wrapper] ==== wrapper stdout END ====
[2025-10-11 08:48:55] 2025-10-11 06:48:55,102 [wrapper] ==== wrapper stderr END ====
[2025-10-11 08:48:55]  *** Error codes and diagnostics ***
[2025-10-11 08:48:55]     "exeErrorCode": 0,
[2025-10-11 08:48:55]     "exeErrorDiag": "",
[2025-10-11 08:48:55]     "pilotErrorCode": 0,
[2025-10-11 08:48:55]     "pilotErrorDiag": "",
[2025-10-11 08:48:55]  *** Listing of results directory ***
[2025-10-11 08:48:55] total 416456
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc    557409 Oct 10 03:33 pilot3.tar.gz
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc      5112 Oct 10 03:34 queuedata.json
[2025-10-11 08:48:55] -rwx------ 1 boinc boinc     36292 Oct 10 03:34 runpilot2-wrapper.sh
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc       100 Oct 11 06:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 08:48:55] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 06:40 run_atlas
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc       105 Oct 11 06:40 job.xml
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc 221802473 Oct 11 06:40 EVNT.46676267._001217.pool.root.1
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc    569680 Oct 11 06:40 input.tar.gz
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc     15120 Oct 11 06:40 start_atlas.sh
[2025-10-11 08:48:55] drwxrwx--x 2 boinc boinc      4096 Oct 11 06:40 shared
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc         0 Oct 11 06:40 boinc_setup_complete
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc      6207 Oct 11 06:40 init_data.xml
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc         0 Oct 11 06:40 boinc_lockfile
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc      2549 Oct 11 06:40 pandaJob.out
[2025-10-11 08:48:55] -rw------- 1 boinc boinc    975517 Oct 11 06:40 agis_schedconf.cvmfs.json
[2025-10-11 08:48:55] -rw------- 1 boinc boinc   1560580 Oct 11 06:40 agis_ddmendpoints.agis.ALL.json
[2025-10-11 08:48:55] drwx------ 5 boinc boinc      4096 Oct 11 06:40 pilot3
[2025-10-11 08:48:55] -rw------- 1 boinc boinc 197978080 Oct 11 08:47 HITS.46676269._029834.pool.root.1
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc       530 Oct 11 08:47 boinc_task_state.xml
[2025-10-11 08:48:55] -rw------- 1 boinc boinc        95 Oct 11 08:48 pilot_heartbeat.json
[2025-10-11 08:48:55] -rw------- 1 boinc boinc      1014 Oct 11 08:48 memory_monitor_summary.json
[2025-10-11 08:48:55] -rw------- 1 boinc boinc    284492 Oct 11 08:48 log.46676269._029834.job.log.tgz.1
[2025-10-11 08:48:55] -rw------- 1 boinc boinc      7755 Oct 11 08:48 heartbeat.json
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc      8192 Oct 11 08:48 boinc_mmap_file
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc        27 Oct 11 08:48 wrapper_checkpoint.txt
[2025-10-11 08:48:55] -rw------- 1 boinc boinc       747 Oct 11 08:48 pilotlog.txt
[2025-10-11 08:48:55] -rw------- 1 boinc boinc   1105396 Oct 11 08:48 log.46676269._029834.job.log.1
[2025-10-11 08:48:55] -rw------- 1 boinc boinc       357 Oct 11 08:48 output.list
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc       620 Oct 11 08:48 runtime_log
[2025-10-11 08:48:55] -rw------- 1 boinc boinc   1413120 Oct 11 08:48 result.tar.gz
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc      8782 Oct 11 08:48 runtime_log.err
[2025-10-11 08:48:55] -rw------- 1 boinc boinc       660 Oct 11 08:48 CpLMDmuCHR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmIwbNDmoDkcGn.diag
[2025-10-11 08:48:55] -rw-r--r-- 1 boinc boinc     11307 Oct 11 08:48 stderr.txt
[2025-10-11 08:48:55] HITS file was successfully produced:
[2025-10-11 08:48:55] -rw------- 1 boinc boinc 197978080 Oct 11 08:47 shared/HITS.pool.root.1
[2025-10-11 08:48:55]  *** Contents of shared directory: ***
[2025-10-11 08:48:55] total 411908
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc 221802473 Oct 11 06:40 ATLAS.root_0
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc    569680 Oct 11 06:40 input.tar.gz
[2025-10-11 08:48:55] -rw-r--r-- 2 boinc boinc     15120 Oct 11 06:40 start_atlas.sh
[2025-10-11 08:48:55] -rw------- 1 boinc boinc 197978080 Oct 11 08:47 HITS.pool.root.1
[2025-10-11 08:48:55] -rw------- 1 boinc boinc   1413120 Oct 11 08:48 result.tar.gz
08:48:56 (1785159): run_atlas exited; CPU time 14936.294473
08:48:56 (1785159): called boinc_finish(0)

</stderr_txt>
]]>

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