Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:20 (3418831): wrapper (7.7.26015): starting
00:01:20 (3418831): wrapper: running run_atlas (--nthreads 12)
[2025-10-11 00:01:20] Arguments: --nthreads 12
[2025-10-11 00:01:20] Threads: 12
[2025-10-11 00:01:20] Checking for CVMFS
[2025-10-11 00:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 00:01:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 00:01:20] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 00:01:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 00:01:20] 2.13.2.0 129280 114043 224028 151571 3 17 21780607 39288832 11949 16776704 1 102635193 99.474 145054597 34547 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 00:01:20] CVMFS is ok
[2025-10-11 00:01:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 00:01:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 00:01:20] Further information can be found at the LHC@home message board.
[2025-10-11 00:01:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 00:01:20] Checking for apptainer binary...
[2025-10-11 00:01:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 00:01:20] Running /usr/bin/apptainer --version
[2025-10-11 00:01:20] apptainer version 1.4.3-1.el9
[2025-10-11 00:01:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 00:01:21] c-210-20.aglt2.org
[2025-10-11 00:01:21] apptainer works
[2025-10-11 00:01:21] Set ATHENA_PROC_NUMBER=12
[2025-10-11 00:01:21] Set ATHENA_CORE_NUMBER=12
[2025-10-11 00:01:21] Starting ATLAS job with PandaID=6837669204
[2025-10-11 00:01:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:49:50 (3683406): wrapper (7.7.26015): starting
01:49:50 (3683406): wrapper: running run_atlas (--nthreads 8)
[2025-10-11 01:49:50] Arguments: --nthreads 8
[2025-10-11 01:49:50] Threads: 8
[2025-10-11 01:49:50] This job has been restarted, cleaning up previous attempt
[2025-10-11 01:49:50] Checking for CVMFS
[2025-10-11 01:49:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 01:49:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 01:49:52] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 01:49:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 01:49:53] 2.13.2.0 129280 114152 235484 151573 3 301 21900431 39288833 12050 16776704 1 102965936 99.476 145057715 34547 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-10-11 01:49:53] CVMFS is ok
[2025-10-11 01:49:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 01:49:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 01:49:53] Further information can be found at the LHC@home message board.
[2025-10-11 01:49:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 01:49:53] Checking for apptainer binary...
[2025-10-11 01:49:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 01:49:53] Running /usr/bin/apptainer --version
[2025-10-11 01:49:53] apptainer version 1.4.3-1.el9
[2025-10-11 01:49:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 01:49:54] c-210-20.aglt2.org
[2025-10-11 01:49:54] apptainer works
[2025-10-11 01:49:54] Set ATHENA_PROC_NUMBER=8
[2025-10-11 01:49:54] Set ATHENA_CORE_NUMBER=8
[2025-10-11 01:49:54] Starting ATLAS job with PandaID=6837669204
[2025-10-11 01:49:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 13:07:58]  *** The last 200 lines of the pilot log: ***
[2025-10-11 13:07:58] 2025-10-11 17:07:21,208 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-11 13:07:58] 2025-10-11 17:07:21,216 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.29745
[2025-10-11 13:07:58] 2025-10-11 17:07:21,224 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6837669204/memory_monitor_summary.json (trf name=prmon)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,225 | INFO     | extracted standard info from prmon json
[2025-10-11 13:07:58] 2025-10-11 17:07:21,225 | INFO     | time since job start (40604s) is within the limit (172800.0s)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,226 | INFO     | extracted standard memory fields from prmon json
[2025-10-11 13:07:58] 2025-10-11 17:07:21,226 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-11 13:07:58] 2025-10-11 17:07:21,227 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-11 13:07:58] 2025-10-11 17:07:21,227 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-11 13:07:58] 2025-10-11 17:07:21,241 | INFO     | fitting pss+swap vs Time
[2025-10-11 13:07:58] 2025-10-11 17:07:21,243 | INFO     | sum of square deviations: 90782428353.93831
[2025-10-11 13:07:58] 2025-10-11 17:07:21,256 | INFO     | sum of deviations: 354434728290.06036
[2025-10-11 13:07:58] 2025-10-11 17:07:21,256 | INFO     | mean x: 1760182153.194277
[2025-10-11 13:07:58] 2025-10-11 17:07:21,256 | INFO     | mean y: 2493375.5421686745
[2025-10-11 13:07:58] 2025-10-11 17:07:21,256 | INFO     | -- intersect: -6869648012.61406
[2025-10-11 13:07:58] 2025-10-11 17:07:21,256 | INFO     | intersect: -6869648012.61406
[2025-10-11 13:07:58] 2025-10-11 17:07:21,258 | INFO     | chi2: 2.2326301141049187
[2025-10-11 13:07:58] 2025-10-11 17:07:21,259 | INFO     | sum of square deviations: 88747458884.47668
[2025-10-11 13:07:58] 2025-10-11 17:07:21,272 | INFO     | sum of deviations: 348766283511.2412
[2025-10-11 13:07:58] 2025-10-11 17:07:21,273 | INFO     | mean x: 1760182000.707132
[2025-10-11 13:07:58] 2025-10-11 17:07:21,273 | INFO     | mean y: 2492950.7784522003
[2025-10-11 13:07:58] 2025-10-11 17:07:21,273 | INFO     | -- intersect: -6914799582.511047
[2025-10-11 13:07:58] 2025-10-11 17:07:21,273 | INFO     | intersect: -6914799582.511047
[2025-10-11 13:07:58] 2025-10-11 17:07:21,274 | INFO     | chi2: 2.2327571804043975
[2025-10-11 13:07:58] 2025-10-11 17:07:21,274 | INFO     | current chi2=2.2327571804043975 (change=-0.005691327850324465 %)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,274 | INFO     | right removable region: 658
[2025-10-11 13:07:58] 2025-10-11 17:07:21,276 | INFO     | sum of square deviations: 88746813018.88919
[2025-10-11 13:07:58] 2025-10-11 17:07:21,288 | INFO     | sum of deviations: 210910894409.8545
[2025-10-11 13:07:58] 2025-10-11 17:07:21,289 | INFO     | mean x: 1760182305.7056146
[2025-10-11 13:07:58] 2025-10-11 17:07:21,289 | INFO     | mean y: 2504105.1745068287
[2025-10-11 13:07:58] 2025-10-11 17:07:21,289 | INFO     | -- intersect: -4180650329.247321
[2025-10-11 13:07:58] 2025-10-11 17:07:21,289 | INFO     | intersect: -4180650329.247321
[2025-10-11 13:07:58] 2025-10-11 17:07:21,290 | INFO     | chi2: 0.17437611104651077
[2025-10-11 13:07:58] 2025-10-11 17:07:21,291 | INFO     | current chi2=0.17437611104651077 (change=92.18965515403255 %)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,292 | INFO     | sum of square deviations: 86741849299.16829
[2025-10-11 13:07:58] 2025-10-11 17:07:21,304 | INFO     | sum of deviations: 187750631766.23575
[2025-10-11 13:07:58] 2025-10-11 17:07:21,304 | INFO     | mean x: 1760182458.2171254
[2025-10-11 13:07:58] 2025-10-11 17:07:21,305 | INFO     | mean y: 2505864.1039755354
[2025-10-11 13:07:58] 2025-10-11 17:07:21,305 | INFO     | -- intersect: -3807366431.958311
[2025-10-11 13:07:58] 2025-10-11 17:07:21,305 | INFO     | intersect: -3807366431.958311
[2025-10-11 13:07:58] 2025-10-11 17:07:21,306 | INFO     | chi2: 0.13751121856618298
[2025-10-11 13:07:58] 2025-10-11 17:07:21,306 | INFO     | current chi2=0.13751121856618298 (change=21.141022275978465 %)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,307 | INFO     | left removable region: 20
[2025-10-11 13:07:58] 2025-10-11 17:07:21,308 | INFO     | sum of square deviations: 80530208225.37457
[2025-10-11 13:07:58] 2025-10-11 17:07:21,320 | INFO     | sum of deviations: 127099069557.37465
[2025-10-11 13:07:58] 2025-10-11 17:07:21,321 | INFO     | mean x: 1760182580.2492163
[2025-10-11 13:07:58] 2025-10-11 17:07:21,321 | INFO     | mean y: 2509862.249216301
[2025-10-11 13:07:58] 2025-10-11 17:07:21,321 | INFO     | -- intersect: -2775547876.961774
[2025-10-11 13:07:58] 2025-10-11 17:07:21,321 | INFO     | intersect: -2775547876.961774
[2025-10-11 13:07:58] 2025-10-11 17:07:21,322 | INFO     | chi2: 0.011119922475467954
[2025-10-11 13:07:58] 2025-10-11 17:07:21,323 | INFO     | -- intersect: -2775547876.961774
[2025-10-11 13:07:58] 2025-10-11 17:07:21,323 | INFO     | current memory leak: 1.58 B/s (using 638 data points, chi2=0.01)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,324 | INFO     | could have reported an average CPU frequency of 2600 MHz (25 samples)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | ..............................
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . Timing measurements:
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . get job = 0 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . initial setup = 2 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . payload setup = 18 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . stage-in = 0 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,325 | INFO     | . payload execution = 40531 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,326 | INFO     | . stage-out = 2 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,326 | INFO     | . log creation = 0 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,326 | INFO     | ..............................
[2025-10-11 13:07:58] 2025-10-11 17:07:21,787 | INFO     | 
[2025-10-11 13:07:58] 2025-10-11 17:07:21,788 | INFO     | job summary report
[2025-10-11 13:07:58] 2025-10-11 17:07:21,788 | INFO     | --------------------------------------------------
[2025-10-11 13:07:58] 2025-10-11 17:07:21,788 | INFO     | PanDA job id: 6837669204
[2025-10-11 13:07:58] 2025-10-11 17:07:21,788 | INFO     | task id: 46676269
[2025-10-11 13:07:58] 2025-10-11 17:07:21,788 | INFO     | errors: (none)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | pilot state: finished 
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | transexitcode: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | exeerrorcode: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | exeerrordiag: 
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | exitcode: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | exitmsg: OK
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | cpuconsumptiontime: 55552 s
[2025-10-11 13:07:58] 2025-10-11 17:07:21,789 | INFO     | nevents: 400
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | neventsw: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | pid: 3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | pgrp: 3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | corecount: 8
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | event service: False
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | sizes: {0: 2348686, 1: 2348885, 12: 2348885, 19: 2349175, 23: 2349203, 40554: 2391987, 40556: 2401013, 40557: 2401069, 40562: 2401327}
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | --------------------------------------------------
[2025-10-11 13:07:58] 2025-10-11 17:07:21,790 | INFO     | 
[2025-10-11 13:07:58] 2025-10-11 17:07:21,791 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-10-11 13:07:58] 2025-10-11 17:07:21,815 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,815 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,817 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | job 6837669204 has completed (purged errors)
[2025-10-11 13:07:58] 2025-10-11 17:07:21,818 | INFO     | overall cleanup function is called
[2025-10-11 13:07:58] 2025-10-11 17:07:22,827 | INFO     | --- collectZombieJob: --- 10, [3708068]
[2025-10-11 13:07:58] 2025-10-11 17:07:22,828 | INFO     | zombie collector waiting for pid 3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:22,828 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 13:07:58] 2025-10-11 17:07:22,828 | INFO     | collected zombie processes
[2025-10-11 13:07:58] 2025-10-11 17:07:22,828 | INFO     | will attempt to kill all subprocesses of pid=3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:23,089 | INFO     | process IDs to be killed: [3708068] (in reverse order)
[2025-10-11 13:07:58] 2025-10-11 17:07:23,160 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 13:07:58] 2025-10-11 17:07:23,161 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 13:07:58] 2025-10-11 17:07:23,171 | INFO     | did not find any defunct processes belonging to 3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:23,180 | INFO     | did not find any defunct processes belonging to 3708068
[2025-10-11 13:07:58] 2025-10-11 17:07:23,180 | INFO     | ready for new job
[2025-10-11 13:07:58] 2025-10-11 17:07:23,180 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 13:07:58] 2025-10-11 17:07:23,183 | INFO     | ***************************************
[2025-10-11 13:07:58] 2025-10-11 17:07:23,183 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 13:07:58] 2025-10-11 17:07:23,183 | INFO     | ***************************************
[2025-10-11 13:07:58] 2025-10-11 17:07:23,183 | INFO     | 
[2025-10-11 13:07:58] 2025-10-11 17:07:23,185 | INFO     | architecture information:
[2025-10-11 13:07:58] 2025-10-11 17:07:23,185 | INFO     | executing command: cat /etc/os-release
[2025-10-11 13:07:58] 2025-10-11 17:07:23,200 | INFO     | cat /etc/os-release:
[2025-10-11 13:07:58] NAME="CentOS Linux"
[2025-10-11 13:07:58] VERSION="7 (Core)"
[2025-10-11 13:07:58] ID="centos"
[2025-10-11 13:07:58] ID_LIKE="rhel fedora"
[2025-10-11 13:07:58] VERSION_ID="7"
[2025-10-11 13:07:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 13:07:58] ANSI_COLOR="0;31"
[2025-10-11 13:07:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 13:07:58] HOME_URL="https://www.centos.org/"
[2025-10-11 13:07:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 13:07:58] 
[2025-10-11 13:07:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 13:07:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 13:07:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 13:07:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 13:07:58] 
[2025-10-11 13:07:58] 2025-10-11 17:07:23,201 | INFO     | ***************************************
[2025-10-11 13:07:58] 2025-10-11 17:07:23,703 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-10-11 13:07:58] 2025-10-11 17:07:23,716 | INFO     | sufficient remaining disk space (53396635648 B)
[2025-10-11 13:07:58] 2025-10-11 17:07:23,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 13:07:58] 2025-10-11 17:07:23,717 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 13:07:58] 2025-10-11 17:07:23,717 | INFO     | update_server=False
[2025-10-11 13:07:58] 2025-10-11 17:07:23,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 13:07:58] 2025-10-11 17:07:23,717 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 13:07:58] 2025-10-11 17:07:23,951 | INFO     | all data control threads have been joined
[2025-10-11 13:07:58] 2025-10-11 17:07:24,106 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 13:07:58] 2025-10-11 17:07:24,107 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 13:07:58] 2025-10-11 17:07:24,107 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:07:58] 2025-10-11 17:07:24,107 | INFO     | will abort loop
[2025-10-11 13:07:58] 2025-10-11 17:07:24,414 | INFO     | all payload control threads have been joined
[2025-10-11 13:07:58] 2025-10-11 17:07:24,722 | INFO     | [job] retrieve thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:24,762 | INFO     | all job control threads have been joined
[2025-10-11 13:07:58] 2025-10-11 17:07:24,956 | INFO     | [data] control thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,113 | INFO     | [job] job monitor thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,194 | INFO     | [job] validate thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,375 | INFO     | [payload] validate_post thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,420 | INFO     | [payload] control thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,723 | INFO     | [data] copytool_out thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,767 | INFO     | [job] control thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:25,820 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,002 | INFO     | [data] copytool_in thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,114 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,189 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,206 | INFO     | [payload] failed_post thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:26,463 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 13:07:58] 2025-10-11 17:07:26,828 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 13:07:58] 2025-10-11 17:07:27,468 | INFO     | [job] queue monitor thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:30,835 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 13:07:58] 2025-10-11 17:07:53,259 | INFO     | [monitor] cgroup control has ended
[2025-10-11 13:07:58] 2025-10-11 17:07:53,552 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139910434551616)>', '<ExcThread(monitor, started 139909499188992)>']
[2025-10-11 13:07:58] 2025-10-11 17:07:54,669 | INFO     | PID=3693693 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-11 13:07:58] 2025-10-11 17:07:54,669 | INFO     | .. there are 12 such processes running
[2025-10-11 13:07:58] 2025-10-11 17:07:54,669 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 13:07:58] 2025-10-11 17:07:54,669 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 13:07:58] 2025-10-11 17:07:54,669 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 13:07:58] 2025-10-11 17:07:54,670 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 13:07:58] 2025-10-11 17:07:54,670 | INFO     | [monitor] control thread has ended
[2025-10-11 13:07:58] 2025-10-11 17:07:58,577 | INFO     | all workflow threads have been joined
[2025-10-11 13:07:58] 2025-10-11 17:07:58,579 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 13:07:58] 2025-10-11 17:07:58,579 | INFO     | traces error code: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:58,580 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 13:07:58] 2025-10-11 17:07:58,787 [wrapper] ==== pilot stdout END ====
[2025-10-11 13:07:58] 2025-10-11 17:07:58,791 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 13:07:58] 2025-10-11 17:07:58,795 [wrapper] pilotpid: 3693693
[2025-10-11 13:07:58] 2025-10-11 17:07:58,798 [wrapper] Pilot exit status: 0
[2025-10-11 13:07:58] 2025-10-11 17:07:58,810 [wrapper] pandaids: 6837669204 6837669204
[2025-10-11 13:07:58] 2025-10-11 17:07:58,867 [wrapper] cleanup supervisor_pilot  523507 3693694
[2025-10-11 13:07:58] 2025-10-11 17:07:58,870 [wrapper] Test setup, not cleaning
[2025-10-11 13:07:58] 2025-10-11 17:07:58,874 [wrapper] apfmon messages muted
[2025-10-11 13:07:58] 2025-10-11 17:07:58,877 [wrapper] ==== wrapper stdout END ====
[2025-10-11 13:07:58] 2025-10-11 17:07:58,880 [wrapper] ==== wrapper stderr END ====
[2025-10-11 13:07:58]  *** Error codes and diagnostics ***
[2025-10-11 13:07:58]     "exeErrorCode": 0,
[2025-10-11 13:07:58]     "exeErrorDiag": "",
[2025-10-11 13:07:58]     "pilotErrorCode": 0,
[2025-10-11 13:07:58]     "pilotErrorDiag": "",
[2025-10-11 13:07:58]  *** Listing of results directory ***
[2025-10-11 13:07:58] total 634204
[2025-10-11 13:07:58] drwx------. 5 boincer umatlas      4096 Oct  7 03:00 pilot3
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 12:15 pilot3.tar.gz
[2025-10-11 13:07:58] -rwx------. 1 boincer umatlas     36292 Oct 10 12:36 runpilot2-wrapper.sh
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 12:36 queuedata.json
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas       100 Oct 11 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 13:07:58] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 11 00:01 run_atlas
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas       105 Oct 11 00:01 job.xml
[2025-10-11 13:07:58] -rw-r--r--. 3 boincer umatlas 219535905 Oct 11 00:01 EVNT.46676267._001686.pool.root.1
[2025-10-11 13:07:58] -rw-r--r--. 3 boincer umatlas 219535905 Oct 11 00:01 ATLAS.root_0
[2025-10-11 13:07:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 13:07:58] drwxrwx--x. 2 boincer umatlas      4096 Oct 11 00:01 shared
[2025-10-11 13:07:58] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 00:01 input.tar.gz
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas         0 Oct 11 00:01 boinc_lockfile
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas      2550 Oct 11 01:49 pandaJob.out
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas    975533 Oct 11 01:50 agis_schedconf.cvmfs.json
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas      6661 Oct 11 13:01 init_data.xml
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas 194992369 Oct 11 13:06 HITS.46676269._041604.pool.root.1
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas       531 Oct 11 13:06 boinc_task_state.xml
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas      1067 Oct 11 13:07 memory_monitor_summary.json
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas   1560580 Oct 11 13:07 agis_ddmendpoints.agis.ALL.json
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas    787130 Oct 11 13:07 log.46676269._041604.job.log.tgz.1
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas      7850 Oct 11 13:07 heartbeat.json
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas        96 Oct 11 13:07 pilot_heartbeat.json
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas        28 Oct 11 13:07 wrapper_checkpoint.txt
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas      8192 Oct 11 13:07 boinc_mmap_file
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas      5010 Oct 11 13:07 pilotlog.txt
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas   4942387 Oct 11 13:07 log.46676269._041604.job.log.1
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas       357 Oct 11 13:07 output.list
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas       620 Oct 11 13:07 runtime_log
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas   5744640 Oct 11 13:07 result.tar.gz
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas      8789 Oct 11 13:07 runtime_log.err
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas       788 Oct 11 13:07 6HINDmqHVR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDm4qdNDmY837em.diag
[2025-10-11 13:07:58] -rw-r--r--. 1 boincer umatlas     23371 Oct 11 13:07 stderr.txt
[2025-10-11 13:07:58] HITS file was successfully produced:
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas 194992369 Oct 11 13:06 shared/HITS.pool.root.1
[2025-10-11 13:07:58]  *** Contents of shared directory: ***
[2025-10-11 13:07:58] total 411008
[2025-10-11 13:07:58] -rw-r--r--. 3 boincer umatlas 219535905 Oct 11 00:01 ATLAS.root_0
[2025-10-11 13:07:58] -rw-r--r--. 2 boincer umatlas     15120 Oct 11 00:01 start_atlas.sh
[2025-10-11 13:07:58] -rw-r--r--. 2 boincer umatlas    569674 Oct 11 00:01 input.tar.gz
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas 194992369 Oct 11 13:06 HITS.pool.root.1
[2025-10-11 13:07:58] -rw-------. 1 boincer umatlas   5744640 Oct 11 13:07 result.tar.gz
13:08:00 (3683406): run_atlas exited; CPU time 56491.453104
13:08:00 (3683406): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN