Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:13:37 (2306328): wrapper (7.7.26015): starting
10:13:37 (2306328): wrapper: running run_atlas (--nthreads 3)
[2025-10-11 10:13:37] Arguments: --nthreads 3
[2025-10-11 10:13:37] Threads: 3
[2025-10-11 10:13:37] Checking for CVMFS
[2025-10-11 10:13:37] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 10:13:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 10:13:37] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 10:13:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 10:13:37] 2.9.2.0 185998 6979 88988 151576 0 57 4735076 36864000 12 130560 0 5604060 99.991 236430 889 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 10:13:37] CVMFS is ok
[2025-10-11 10:13:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 10:13:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 10:13:37] Further information can be found at the LHC@home message board.
[2025-10-11 10:13:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 10:13:37] Checking for apptainer binary...
[2025-10-11 10:13:37] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 10:13:37] Running /usr/bin/apptainer --version
[2025-10-11 10:13:37] apptainer version 1.4.1-1.1
[2025-10-11 10:13:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 10:13:37] thA387a
[2025-10-11 10:13:37] apptainer works
[2025-10-11 10:13:37] Set ATHENA_PROC_NUMBER=3
[2025-10-11 10:13:37] Set ATHENA_CORE_NUMBER=3
[2025-10-11 10:13:37] Starting ATLAS job with PandaID=6837557542
[2025-10-11 10:13:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 11:31:54]  *** The last 200 lines of the pilot log: ***
[2025-10-11 11:31:54] 2025-10-11 09:31:12,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | job 6837557542 has completed (purged errors)
[2025-10-11 11:31:54] 2025-10-11 09:31:12,555 | INFO     | overall cleanup function is called
[2025-10-11 11:31:54] 2025-10-11 09:31:13,561 | INFO     | --- collectZombieJob: --- 10, [2316483]
[2025-10-11 11:31:54] 2025-10-11 09:31:13,562 | INFO     | zombie collector waiting for pid 2316483
[2025-10-11 11:31:54] 2025-10-11 09:31:13,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 11:31:54] 2025-10-11 09:31:13,562 | INFO     | collected zombie processes
[2025-10-11 11:31:54] 2025-10-11 09:31:13,562 | INFO     | will attempt to kill all subprocesses of pid=2316483
[2025-10-11 11:31:54] 2025-10-11 09:31:13,604 | INFO     | process IDs to be killed: [2316483] (in reverse order)
[2025-10-11 11:31:54] 2025-10-11 09:31:13,627 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 11:31:54] 2025-10-11 09:31:13,627 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 11:31:54] 2025-10-11 09:31:13,628 | INFO     | did not find any defunct processes belonging to 2316483
[2025-10-11 11:31:54] 2025-10-11 09:31:13,629 | INFO     | did not find any defunct processes belonging to 2316483
[2025-10-11 11:31:54] 2025-10-11 09:31:13,629 | INFO     | ready for new job
[2025-10-11 11:31:54] 2025-10-11 09:31:13,630 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 11:31:54] 2025-10-11 09:31:13,630 | INFO     | ***************************************
[2025-10-11 11:31:54] 2025-10-11 09:31:13,630 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 11:31:54] 2025-10-11 09:31:13,630 | INFO     | ***************************************
[2025-10-11 11:31:54] 2025-10-11 09:31:13,630 | INFO     | 
[2025-10-11 11:31:54] 2025-10-11 09:31:13,631 | INFO     | architecture information:
[2025-10-11 11:31:54] 2025-10-11 09:31:13,631 | INFO     | executing command: cat /etc/os-release
[2025-10-11 11:31:54] 2025-10-11 09:31:13,639 | INFO     | cat /etc/os-release:
[2025-10-11 11:31:54] NAME="CentOS Linux"
[2025-10-11 11:31:54] VERSION="7 (Core)"
[2025-10-11 11:31:54] ID="centos"
[2025-10-11 11:31:54] ID_LIKE="rhel fedora"
[2025-10-11 11:31:54] VERSION_ID="7"
[2025-10-11 11:31:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 11:31:54] ANSI_COLOR="0;31"
[2025-10-11 11:31:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 11:31:54] HOME_URL="https://www.centos.org/"
[2025-10-11 11:31:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 11:31:54] 
[2025-10-11 11:31:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 11:31:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 11:31:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 11:31:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 11:31:54] 
[2025-10-11 11:31:54] 2025-10-11 09:31:13,639 | INFO     | ***************************************
[2025-10-11 11:31:54] 2025-10-11 09:31:14,142 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 11:31:54] 2025-10-11 09:31:14,153 | INFO     | sufficient remaining disk space (254732664832 B)
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | INFO     | update_server=False
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 11:31:54] 2025-10-11 09:31:14,154 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 11:31:54] 2025-10-11 09:31:14,449 | INFO     | all data control threads have been joined
[2025-10-11 11:31:54] 2025-10-11 09:31:14,554 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 11:31:54] 2025-10-11 09:31:14,555 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 11:31:54] 2025-10-11 09:31:14,555 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 11:31:54] 2025-10-11 09:31:14,555 | INFO     | will abort loop
[2025-10-11 11:31:54] 2025-10-11 09:31:15,159 | INFO     | [job] retrieve thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,160 | INFO     | [job] queue monitor thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,190 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 11:31:54] 2025-10-11 09:31:15,390 | INFO     | all payload control threads have been joined
[2025-10-11 11:31:54] 2025-10-11 09:31:15,400 | INFO     | [payload] validate_post thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,455 | INFO     | [data] control thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,460 | INFO     | all job control threads have been joined
[2025-10-11 11:31:54] 2025-10-11 09:31:15,560 | INFO     | [job] job monitor thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,890 | INFO     | [data] copytool_in thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:15,957 | INFO     | [payload] failed_post thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,175 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,396 | INFO     | [payload] control thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,454 | INFO     | [job] validate thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,466 | INFO     | [job] control thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,521 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:16,550 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:17,195 | INFO     | [data] copytool_out thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:18,161 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:24,349 | INFO     | job.realtimelogging is not enabled
[2025-10-11 11:31:54] 2025-10-11 09:31:25,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 11:31:54] 2025-10-11 09:31:48,121 | INFO     | [monitor] cgroup control has ended
[2025-10-11 11:31:54] 2025-10-11 09:31:49,063 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140636299491136)>', '<ExcThread(monitor, started 140635675813632)>']
[2025-10-11 11:31:54] 2025-10-11 09:31:49,329 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 11:31:54] 2025-10-11 09:31:49,330 | INFO     | [monitor] control thread has ended
[2025-10-11 11:31:54] 2025-10-11 09:31:54,088 | INFO     | all workflow threads have been joined
[2025-10-11 11:31:54] 2025-10-11 09:31:54,089 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 11:31:54] 2025-10-11 09:31:54,089 | INFO     | traces error code: 0
[2025-10-11 11:31:54] 2025-10-11 09:31:54,089 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 11:31:54] 2025-10-11 09:31:54,137 [wrapper] ==== pilot stdout END ====
[2025-10-11 11:31:54] 2025-10-11 09:31:54,139 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 11:31:54] 2025-10-11 09:31:54,142 [wrapper] pilotpid: 2310040
[2025-10-11 11:31:54] 2025-10-11 09:31:54,144 [wrapper] Pilot exit status: 0
[2025-10-11 11:31:54] 2025-10-11 09:31:54,151 [wrapper] pandaids: 6837557542
[2025-10-11 11:31:54] 2025-10-11 09:31:54,167 [wrapper] cleanup supervisor_pilot 2328473 2310041
[2025-10-11 11:31:54] 2025-10-11 09:31:54,169 [wrapper] Test setup, not cleaning
[2025-10-11 11:31:54] 2025-10-11 09:31:54,171 [wrapper] apfmon messages muted
[2025-10-11 11:31:54] 2025-10-11 09:31:54,174 [wrapper] ==== wrapper stdout END ====
[2025-10-11 11:31:54] 2025-10-11 09:31:54,176 [wrapper] ==== wrapper stderr END ====
[2025-10-11 11:31:54]  *** Error codes and diagnostics ***
[2025-10-11 11:31:54]     "exeErrorCode": 0,
[2025-10-11 11:31:54]     "exeErrorDiag": "",
[2025-10-11 11:31:54]     "pilotErrorCode": 0,
[2025-10-11 11:31:54]     "pilotErrorDiag": "",
[2025-10-11 11:31:54]  *** Listing of results directory ***
[2025-10-11 11:31:54] total 407968
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc    557409 Oct 10 11:06 pilot3.tar.gz
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc      5112 Oct 10 11:42 queuedata.json
[2025-10-11 11:31:54] -rwx------ 1 boinc boinc     36292 Oct 10 11:43 runpilot2-wrapper.sh
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc       100 Oct 11 10:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 11:31:54] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 10:13 run_atlas
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc       105 Oct 11 10:13 job.xml
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc 223157756 Oct 11 10:13 EVNT.46676267._001479.pool.root.1
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc    569682 Oct 11 10:13 input.tar.gz
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc     15120 Oct 11 10:13 start_atlas.sh
[2025-10-11 11:31:54] drwxrwx--x 2 boinc boinc      4096 Oct 11 10:13 shared
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc         0 Oct 11 10:13 boinc_setup_complete
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc      6438 Oct 11 10:13 init_data.xml
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc         0 Oct 11 10:13 boinc_lockfile
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc      2549 Oct 11 10:13 pandaJob.out
[2025-10-11 11:31:54] -rw------- 1 boinc boinc    975525 Oct 11 10:13 agis_schedconf.cvmfs.json
[2025-10-11 11:31:54] -rw------- 1 boinc boinc   1560580 Oct 11 10:13 agis_ddmendpoints.agis.ALL.json
[2025-10-11 11:31:54] drwx------ 5 boinc boinc      4096 Oct 11 10:13 pilot3
[2025-10-11 11:31:54] -rw------- 1 boinc boinc 188855640 Oct 11 11:30 HITS.46676269._036390.pool.root.1
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc       529 Oct 11 11:30 boinc_task_state.xml
[2025-10-11 11:31:54] -rw------- 1 boinc boinc      1023 Oct 11 11:31 memory_monitor_summary.json
[2025-10-11 11:31:54] -rw------- 1 boinc boinc    240586 Oct 11 11:31 log.46676269._036390.job.log.tgz.1
[2025-10-11 11:31:54] -rw------- 1 boinc boinc        95 Oct 11 11:31 pilot_heartbeat.json
[2025-10-11 11:31:54] -rw------- 1 boinc boinc      7767 Oct 11 11:31 heartbeat.json
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc      8192 Oct 11 11:31 boinc_mmap_file
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc        27 Oct 11 11:31 wrapper_checkpoint.txt
[2025-10-11 11:31:54] -rw------- 1 boinc boinc      4814 Oct 11 11:31 pilotlog.txt
[2025-10-11 11:31:54] -rw------- 1 boinc boinc    686563 Oct 11 11:31 log.46676269._036390.job.log.1
[2025-10-11 11:31:54] -rw------- 1 boinc boinc       357 Oct 11 11:31 output.list
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc       620 Oct 11 11:31 runtime_log
[2025-10-11 11:31:54] -rw------- 1 boinc boinc    942080 Oct 11 11:31 result.tar.gz
[2025-10-11 11:31:54] -rw------- 1 boinc boinc       659 Oct 11 11:31 x9gKDmdpOR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmDzcNDmM473Qm.diag
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc      8782 Oct 11 11:31 runtime_log.err
[2025-10-11 11:31:54] -rw-r--r-- 1 boinc boinc     12386 Oct 11 11:31 stderr.txt
[2025-10-11 11:31:54] HITS file was successfully produced:
[2025-10-11 11:31:54] -rw------- 1 boinc boinc 188855640 Oct 11 11:30 shared/HITS.pool.root.1
[2025-10-11 11:31:54]  *** Contents of shared directory: ***
[2025-10-11 11:31:54] total 403864
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc 223157756 Oct 11 10:13 ATLAS.root_0
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc    569682 Oct 11 10:13 input.tar.gz
[2025-10-11 11:31:54] -rw-r--r-- 2 boinc boinc     15120 Oct 11 10:13 start_atlas.sh
[2025-10-11 11:31:54] -rw------- 1 boinc boinc 188855640 Oct 11 11:30 HITS.pool.root.1
[2025-10-11 11:31:54] -rw------- 1 boinc boinc    942080 Oct 11 11:31 result.tar.gz
11:31:55 (2306328): run_atlas exited; CPU time 13234.291239
11:31:55 (2306328): called boinc_finish(0)

</stderr_txt>
]]>

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