Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
19:19:39 (482859): wrapper (7.7.26015): starting
19:19:39 (482859): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 19:19:39] Arguments: --nthreads 12
[2025-10-10 19:19:39] Threads: 12
[2025-10-10 19:19:39] Checking for CVMFS
[2025-10-10 19:19:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 19:19:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 19:19:39] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 19:19:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 19:19:40] 2.13.2.0 3843265 2235 59116 151566 2 57 3081483 6144001 3668 130560 0 13355613 99.998 198604 552 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 19:19:40] CVMFS is ok
[2025-10-10 19:19:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 19:19:40] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 19:19:40] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 19:19:40] Further information can be found at the LHC@home message board.
[2025-10-10 19:19:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 19:19:40] Checking for apptainer binary...
[2025-10-10 19:19:40] apptainer is not installed, using version from CVMFS
[2025-10-10 19:19:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 19:19:41] XeonFire
[2025-10-10 19:19:41] apptainer works
[2025-10-10 19:19:41] Set ATHENA_PROC_NUMBER=12
[2025-10-10 19:19:41] Set ATHENA_CORE_NUMBER=12
[2025-10-10 19:19:41] Starting ATLAS job with PandaID=6837509307
[2025-10-10 19:19:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 20:15:20]  *** The last 200 lines of the pilot log: ***
[2025-10-10 20:15:20] 2025-10-11 01:14:09,111 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/log.46676269._034580.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.466762
[2025-10-10 20:15:20] 2025-10-11 01:14:09,131 | INFO     | adding to output.list: log.46676269._034580.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/0d/b9/log.46676269._034580.job.log.tg
[2025-10-10 20:15:20] 2025-10-11 01:14:09,132 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 20:15:20] 2025-10-11 01:14:09,132 | INFO     | summary of transferred files:
[2025-10-10 20:15:20] 2025-10-11 01:14:09,132 | INFO     |  -- lfn=log.46676269._034580.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 20:15:20] 2025-10-11 01:14:09,132 | INFO     | stage-out finished correctly
[2025-10-10 20:15:20] 2025-10-11 01:14:09,240 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 20:15:20] 2025-10-11 01:14:10,672 | INFO     | time since job start (3241s) is within the limit (172800.0s)
[2025-10-10 20:15:20] 2025-10-11 01:14:11,818 | INFO     | job 6837509307 has state=finished
[2025-10-10 20:15:20] 2025-10-11 01:14:11,818 | INFO     | preparing for final server update for job 6837509307 in state='finished'
[2025-10-10 20:15:20] 2025-10-11 01:14:11,819 | INFO     | this job has now completed (state=finished)
[2025-10-10 20:15:20] 2025-10-11 01:14:11,819 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 20:15:20] 2025-10-11 01:14:11,819 | INFO     | log transfer has been attempted: DONE
[2025-10-10 20:15:20] 2025-10-11 01:14:11,819 | INFO     | job 6837509307 has finished - writing final server update
[2025-10-10 20:15:20] 2025-10-11 01:14:11,820 | INFO     | total number of processed events: 400 (read)
[2025-10-10 20:15:20] 2025-10-11 01:14:11,821 | INFO     | executing command: lscpu
[2025-10-10 20:15:20] 2025-10-11 01:14:11,895 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 20:15:20] 2025-10-11 01:14:12,678 | INFO     | time since job start (3243s) is within the limit (172800.0s)
[2025-10-10 20:15:20] 2025-10-11 01:14:13,473 | WARNING  | process 493984 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 20:15:20] 2025-10-11 01:14:13,473 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:15:20] 2025-10-11 01:14:13,475 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:15:20] 2025-10-11 01:14:13,475 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2025-10-10 20:15:20] 2025-10-11 01:14:13,475 | WARNING  | maxPSS not found in memory monitor output
[2025-10-10 20:15:20] 2025-10-11 01:14:13,476 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3721295 B
[2025-10-10 20:15:20] 2025-10-11 01:14:13,476 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15795 B
[2025-10-10 20:15:20] 2025-10-11 01:14:13,476 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-10 20:15:20] 2025-10-11 01:14:14,683 | INFO     | time since job start (3245s) is within the limit (172800.0s)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,364 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 20:15:20] 2025-10-11 01:14:16,382 | INFO     | sufficient remaining disk space (1816651628544 B)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,383 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,385 | INFO     | size of work directory /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307: 4011135 B (within 2537553920 B limit)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,385 | INFO     | pfn file=/var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/HITS.46676269._034580.pool.root.1 does not exist (skip from workdir size calculation)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,385 | INFO     | total size of present files: 0 B (workdir size: 4011135 B)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,386 | INFO     | output file size check: skipping output file /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/HITS.46676269._034580.pool.root.1 since it does not exist
[2025-10-10 20:15:20] 2025-10-11 01:14:16,397 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2418.075931818182
[2025-10-10 20:15:20] 2025-10-11 01:14:16,417 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6837509307/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,418 | INFO     | extracted standard info from prmon json
[2025-10-10 20:15:20] 2025-10-11 01:14:16,419 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 20:15:20] 2025-10-11 01:14:16,419 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 20:15:20] 2025-10-11 01:14:16,419 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 20:15:20] 2025-10-11 01:14:16,419 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 20:15:20] 2025-10-11 01:14:16,421 | INFO     | fitting pss+swap vs Time
[2025-10-10 20:15:20] 2025-10-11 01:14:16,422 | INFO     | sum of square deviations: 30168007.5
[2025-10-10 20:15:20] 2025-10-11 01:14:16,422 | INFO     | sum of deviations: -1996197001.0000005
[2025-10-10 20:15:20] 2025-10-11 01:14:16,422 | INFO     | mean x: 1760143713.5
[2025-10-10 20:15:20] 2025-10-11 01:14:16,422 | INFO     | mean y: 2824963.7391304346
[2025-10-10 20:15:20] 2025-10-11 01:14:16,423 | INFO     | -- intersect: 116470364366.78735
[2025-10-10 20:15:20] 2025-10-11 01:14:16,423 | INFO     | intersect: 116470364366.78735
[2025-10-10 20:15:20] 2025-10-11 01:14:16,423 | INFO     | chi2: 0.03133511133197077
[2025-10-10 20:15:20] 2025-10-11 01:14:16,423 | INFO     | -- intersect: 116470364366.78735
[2025-10-10 20:15:20] 2025-10-11 01:14:16,423 | INFO     | current memory leak: -66.17 B/s (using 46 data points, chi2=0.03)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,424 | INFO     | could have reported an average CPU frequency of 2411 MHz (5 samples)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,424 | INFO     | ..............................
[2025-10-10 20:15:20] 2025-10-11 01:14:16,424 | INFO     | . Timing measurements:
[2025-10-10 20:15:20] 2025-10-11 01:14:16,424 | INFO     | . get job = 0 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . initial setup = 17 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . payload setup = 6 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . stage-in = 0 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . payload execution = 3212 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . stage-out = 0 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | . log creation = 0 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,425 | INFO     | ..............................
[2025-10-10 20:15:20] 2025-10-11 01:14:16,531 | INFO     | 
[2025-10-10 20:15:20] 2025-10-11 01:14:16,532 | INFO     | job summary report
[2025-10-10 20:15:20] 2025-10-11 01:14:16,532 | INFO     | --------------------------------------------------
[2025-10-10 20:15:20] 2025-10-11 01:14:16,532 | INFO     | PanDA job id: 6837509307
[2025-10-10 20:15:20] 2025-10-11 01:14:16,532 | INFO     | task id: 46676269
[2025-10-10 20:15:20] 2025-10-11 01:14:16,532 | INFO     | errors: (none)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,533 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 20:15:20] 2025-10-11 01:14:16,533 | INFO     | pilot state: finished 
[2025-10-10 20:15:20] 2025-10-11 01:14:16,533 | INFO     | transexitcode: 0
[2025-10-10 20:15:20] 2025-10-11 01:14:16,533 | INFO     | exeerrorcode: 0
[2025-10-10 20:15:20] 2025-10-11 01:14:16,533 | INFO     | exeerrordiag: 
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | exitcode: 0
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | exitmsg: OK
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | cpuconsumptiontime: 33990 s
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | nevents: 400
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | neventsw: 0
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | pid: 493984
[2025-10-10 20:15:20] 2025-10-11 01:14:16,534 | INFO     | pgrp: 493984
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | corecount: 12
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | event service: False
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | sizes: {0: 2348636, 1: 2348835, 6: 2349097, 11: 2349125, 3222: 2374433, 3224: 2383629, 3232: 2383827}
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | --------------------------------------------------
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | 
[2025-10-10 20:15:20] 2025-10-11 01:14:16,535 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-10-10 20:15:20] 2025-10-11 01:14:16,561 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,561 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,562 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,563 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,564 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,564 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 20:15:20] 2025-10-11 01:14:16,564 | INFO     | job 6837509307 has completed (purged errors)
[2025-10-10 20:15:20] 2025-10-11 01:14:16,564 | INFO     | overall cleanup function is called
[2025-10-10 20:15:20] 2025-10-11 01:14:16,960 | INFO     | number of running child processes to parent process 493984: 1
[2025-10-10 20:15:20] 2025-10-11 01:14:16,961 | INFO     | maximum number of monitored processes: 6
[2025-10-10 20:15:20] 2025-10-11 01:14:16,961 | INFO     | aborting job monitoring since job object (job id=6837509307) has expired
[2025-10-10 20:15:20] 2025-10-11 01:14:17,574 | INFO     | --- collectZombieJob: --- 10, [493984]
[2025-10-10 20:15:20] 2025-10-11 01:14:17,575 | INFO     | zombie collector waiting for pid 493984
[2025-10-10 20:15:20] 2025-10-11 01:14:17,575 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 20:15:20] 2025-10-11 01:14:17,575 | INFO     | collected zombie processes
[2025-10-10 20:15:20] 2025-10-11 01:14:17,575 | INFO     | will attempt to kill all subprocesses of pid=493984
[2025-10-10 20:15:20] 2025-10-11 01:14:17,986 | INFO     | process IDs to be killed: [493984] (in reverse order)
[2025-10-10 20:15:20] 2025-10-11 01:14:18,112 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 20:15:20] 2025-10-11 01:14:18,113 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 20:15:20] 2025-10-11 01:14:18,123 | INFO     | did not find any defunct processes belonging to 493984
[2025-10-10 20:15:20] 2025-10-11 01:14:18,131 | INFO     | did not find any defunct processes belonging to 493984
[2025-10-10 20:15:20] 2025-10-11 01:14:18,132 | INFO     | ready for new job
[2025-10-10 20:15:20] 2025-10-11 01:14:18,132 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 20:15:20] 2025-10-11 01:14:18,134 | INFO     | ***************************************
[2025-10-10 20:15:20] 2025-10-11 01:14:18,134 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 20:15:20] 2025-10-11 01:14:18,134 | INFO     | ***************************************
[2025-10-10 20:15:20] 2025-10-11 01:14:18,134 | INFO     | 
[2025-10-10 20:15:20] 2025-10-11 01:14:18,139 | INFO     | architecture information:
[2025-10-10 20:15:20] 2025-10-11 01:14:18,140 | INFO     | executing command: cat /etc/os-release
[2025-10-10 20:15:20] 2025-10-11 01:14:18,155 | INFO     | cat /etc/os-release:
[2025-10-10 20:15:20] NAME="CentOS Linux"
[2025-10-10 20:15:20] VERSION="7 (Core)"
[2025-10-10 20:15:20] ID="centos"
[2025-10-10 20:15:20] ID_LIKE="rhel fedora"
[2025-10-10 20:15:20] VERSION_ID="7"
[2025-10-10 20:15:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 20:15:20] ANSI_COLOR="0;31"
[2025-10-10 20:15:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 20:15:20] HOME_URL="https://www.centos.org/"
[2025-10-10 20:15:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 20:15:20] 
[2025-10-10 20:15:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 20:15:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 20:15:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 20:15:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 20:15:20] 
[2025-10-10 20:15:20] 2025-10-11 01:14:18,155 | INFO     | ***************************************
[2025-10-10 20:15:20] 2025-10-11 01:14:18,658 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-10-10 20:15:20] 2025-10-11 01:14:18,676 | INFO     | sufficient remaining disk space (1816656871424 B)
[2025-10-10 20:15:20] 2025-10-11 01:14:18,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 20:15:20] 2025-10-11 01:14:18,677 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 20:15:20] 2025-10-11 01:14:18,677 | INFO     | update_server=False
[2025-10-10 20:15:20] 2025-10-11 01:14:18,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 20:15:20] 2025-10-11 01:14:18,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:15:20] 2025-10-11 01:14:18,678 | INFO     | aborting loop
[2025-10-10 20:15:20] 2025-10-11 01:14:19,290 | INFO     | all payload control threads have been joined
[2025-10-10 20:15:20] 2025-10-11 01:14:19,638 | INFO     | all data control threads have been joined
[2025-10-10 20:15:20] 2025-10-11 01:14:19,680 | INFO     | [job] retrieve thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:19,683 | INFO     | [job] job monitor thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:19,754 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 20:15:20] 2025-10-11 01:14:19,854 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 20:15:20] 2025-10-11 01:14:19,934 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,041 | INFO     | all job control threads have been joined
[2025-10-10 20:15:20] 2025-10-11 01:14:20,187 | INFO     | [job] validate thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,296 | INFO     | [payload] control thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,375 | INFO     | [payload] failed_post thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,500 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,644 | INFO     | [data] control thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,669 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,950 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:20,989 | INFO     | [payload] validate_post thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:21,046 | INFO     | [job] control thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:21,080 | INFO     | [data] copytool_in thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:21,542 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 20:15:20] 2025-10-11 01:14:21,759 | INFO     | [data] copytool_out thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:22,548 | INFO     | [job] queue monitor thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:23,860 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 20:15:20] 2025-10-11 01:14:48,270 | INFO     | PID=486928 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 20:15:20] 2025-10-11 01:14:48,271 | INFO     | .. there are 5 such processes running
[2025-10-10 20:15:20] 2025-10-11 01:14:48,271 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 20:15:20] 2025-10-11 01:14:48,271 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 20:15:20] 2025-10-11 01:14:48,271 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 20:15:20] 2025-10-11 01:15:13,601 | INFO     | [monitor] cgroup control has ended
[2025-10-10 20:15:20] 2025-10-11 01:15:15,537 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 134796003514176)>', '<ExcThread(monitor, started 134795191379712)>']
[2025-10-10 20:15:20] 2025-10-11 01:15:16,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 20:15:20] 2025-10-11 01:15:16,412 | INFO     | [monitor] control thread has ended
[2025-10-10 20:15:20] 2025-10-11 01:15:20,562 | INFO     | all workflow threads have been joined
[2025-10-10 20:15:20] 2025-10-11 01:15:20,562 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 20:15:20] 2025-10-11 01:15:20,563 | INFO     | traces error code: 0
[2025-10-10 20:15:20] 2025-10-11 01:15:20,563 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 20:15:20] 2025-10-11 01:15:20,672 [wrapper] ==== pilot stdout END ====
[2025-10-10 20:15:20] 2025-10-11 01:15:20,676 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 20:15:20] 2025-10-11 01:15:20,679 [wrapper] pilotpid: 486928
[2025-10-10 20:15:20] 2025-10-11 01:15:20,681 [wrapper] Pilot exit status: 0
[2025-10-10 20:15:20] 2025-10-11 01:15:20,693 [wrapper] pandaids: 6837509307
[2025-10-10 20:15:20] 2025-10-11 01:15:20,769 [wrapper] cleanup supervisor_pilot  584123 486929
[2025-10-10 20:15:20] 2025-10-11 01:15:20,773 [wrapper] Test setup, not cleaning
[2025-10-10 20:15:20] 2025-10-11 01:15:20,776 [wrapper] apfmon messages muted
[2025-10-10 20:15:20] 2025-10-11 01:15:20,785 [wrapper] ==== wrapper stdout END ====
[2025-10-10 20:15:20] 2025-10-11 01:15:20,789 [wrapper] ==== wrapper stderr END ====
[2025-10-10 20:15:20]  *** Error codes and diagnostics ***
[2025-10-10 20:15:20]     "exeErrorCode": 0,
[2025-10-10 20:15:20]     "exeErrorDiag": "",
[2025-10-10 20:15:20]     "pilotErrorCode": 0,
[2025-10-10 20:15:20]     "pilotErrorDiag": "",
[2025-10-10 20:15:20]  *** Listing of results directory ***
[2025-10-10 20:15:20] total 414204
[2025-10-10 20:15:20] -rw-r--r-- 1 mark mark    557409 Oct 10 02:12 pilot3.tar.gz
[2025-10-10 20:15:20] -rwx------ 1 mark mark     36292 Oct 10 02:23 runpilot2-wrapper.sh
[2025-10-10 20:15:20] -rw-r--r-- 1 mark mark      5112 Oct 10 02:23 queuedata.json
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark       100 Oct 10 19:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 20:15:20] -rwxr-xr-x 1 mark mark      7986 Oct 10 19:19 run_atlas
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark       105 Oct 10 19:19 job.xml
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark 224571438 Oct 10 19:19 EVNT.46676267._001407.pool.root.1
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark     15120 Oct 10 19:19 start_atlas.sh
[2025-10-10 20:15:20] drwxrwx--x 2 mark mark      4096 Oct 10 19:19 shared
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark    569674 Oct 10 19:19 input.tar.gz
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark      9229 Oct 10 19:19 init_data.xml
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark         0 Oct 10 19:19 boinc_setup_complete
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark         0 Oct 10 19:19 boinc_lockfile
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark      2546 Oct 10 19:19 pandaJob.out
[2025-10-10 20:15:20] -rw------- 1 mark mark    975525 Oct 10 19:19 agis_schedconf.cvmfs.json
[2025-10-10 20:15:20] -rw------- 1 mark mark   1560580 Oct 10 19:20 agis_ddmendpoints.agis.ALL.json
[2025-10-10 20:15:20] drwx------ 5 mark mark      4096 Oct 10 19:20 pilot3
[2025-10-10 20:15:20] -rw------- 1 mark mark 193976894 Oct 10 20:13 HITS.46676269._034580.pool.root.1
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark       529 Oct 10 20:13 boinc_task_state.xml
[2025-10-10 20:15:20] -rw------- 1 mark mark      1033 Oct 10 20:14 memory_monitor_summary.json
[2025-10-10 20:15:20] -rw------- 1 mark mark        95 Oct 10 20:14 pilot_heartbeat.json
[2025-10-10 20:15:20] -rw------- 1 mark mark    351238 Oct 10 20:14 log.46676269._034580.job.log.tgz.1
[2025-10-10 20:15:20] -rw------- 1 mark mark      7787 Oct 10 20:14 heartbeat.json
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark      8192 Oct 10 20:15 boinc_mmap_file
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark        27 Oct 10 20:15 wrapper_checkpoint.txt
[2025-10-10 20:15:20] -rw------- 1 mark mark      4831 Oct 10 20:15 pilotlog.txt
[2025-10-10 20:15:20] -rw------- 1 mark mark    492207 Oct 10 20:15 log.46676269._034580.job.log.1
[2025-10-10 20:15:20] -rw------- 1 mark mark       357 Oct 10 20:15 output.list
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark       620 Oct 10 20:15 runtime_log
[2025-10-10 20:15:20] -rw------- 1 mark mark    860160 Oct 10 20:15 result.tar.gz
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark      8759 Oct 10 20:15 runtime_log.err
[2025-10-10 20:15:20] -rw------- 1 mark mark       645 Oct 10 20:15 dhiLDmjeMR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmZjcNDmM1EaKo.diag
[2025-10-10 20:15:20] -rw-rw-r-- 1 mark mark     22778 Oct 10 20:15 stderr.txt
[2025-10-10 20:15:20] HITS file was successfully produced:
[2025-10-10 20:15:20] -rw------- 1 mark mark 193976894 Oct 10 20:13 shared/HITS.pool.root.1
[2025-10-10 20:15:20]  *** Contents of shared directory: ***
[2025-10-10 20:15:20] total 410168
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark 224571438 Oct 10 19:19 ATLAS.root_0
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark     15120 Oct 10 19:19 start_atlas.sh
[2025-10-10 20:15:20] -rw-r--r-- 2 mark mark    569674 Oct 10 19:19 input.tar.gz
[2025-10-10 20:15:20] -rw------- 1 mark mark 193976894 Oct 10 20:13 HITS.pool.root.1
[2025-10-10 20:15:20] -rw------- 1 mark mark    860160 Oct 10 20:15 result.tar.gz
20:15:21 (482859): run_atlas exited; CPU time 34114.326013
20:15:21 (482859): called boinc_finish(0)

</stderr_txt>
]]>

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