Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:54:49 (2230664): wrapper (7.7.26015): starting
13:54:49 (2230664): wrapper: running run_atlas (--nthreads 11)
[2025-10-10 13:54:49] Arguments: --nthreads 11
[2025-10-10 13:54:49] Threads: 11
[2025-10-10 13:54:49] Checking for CVMFS
[2025-10-10 13:54:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:54:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:54:49] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:54:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:54:50] 2.13.2.0 3683012 10234 153060 151556 3 463 34149090 40960001 36653 16776704 0 101641585 99.803 54713531 32561 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 13:54:50] CVMFS is ok
[2025-10-10 13:54:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:54:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:54:50] Further information can be found at the LHC@home message board.
[2025-10-10 13:54:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:54:50] Checking for apptainer binary...
[2025-10-10 13:54:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:54:50] Running /usr/bin/apptainer --version
[2025-10-10 13:54:50] apptainer version 1.4.3-1.el9
[2025-10-10 13:54:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:54:50] c8-7-4.aglt2.org
[2025-10-10 13:54:50] apptainer works
[2025-10-10 13:54:50] Set ATHENA_PROC_NUMBER=11
[2025-10-10 13:54:50] Set ATHENA_CORE_NUMBER=11
[2025-10-10 13:54:50] Starting ATLAS job with PandaID=6837558295
[2025-10-10 13:54:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 14:54:24]  *** The last 200 lines of the pilot log: ***
[2025-10-10 14:54:24]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2025-10-10 14:54:24]  replicas=None
[2025-10-10 14:54:24]  scope=mc23_13p6TeV
[2025-10-10 14:54:24]  status=None
[2025-10-10 14:54:24]  status_code=0
[2025-10-10 14:54:24]  storage_token=
[2025-10-10 14:54:24]  surl=/tmp/boinchome/slots/4/PanDA_Pilot-6837558295/log.46676269._036636.job.log.tgz.1
[2025-10-10 14:54:24]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/86/log.46676269._036636.job.log.tgz.1
[2025-10-10 14:54:24]  workdir=None
[2025-10-10 14:54:24] ]
[2025-10-10 14:54:24] 2025-10-10 18:53:45,728 | INFO     | transferring file log.46676269._036636.job.log.tgz.1 from /tmp/boinchome/slots/4/PanDA_Pilot-6837558295/log.46676269._036636.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 14:54:24] 2025-10-10 18:53:45,729 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/4/PanDA_Pilot-6837558295/log.46676269._036636.job.log.tgz.1 /tmp/boinchome/slots/4/log.46676269._036636.job
[2025-10-10 14:54:24] 2025-10-10 18:53:45,749 | INFO     | adding to output.list: log.46676269._036636.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/e9/86/log.46676269._036636.job.log.tg
[2025-10-10 14:54:24] 2025-10-10 18:53:45,749 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 14:54:24] 2025-10-10 18:53:45,749 | INFO     | summary of transferred files:
[2025-10-10 14:54:24] 2025-10-10 18:53:45,749 | INFO     |  -- lfn=log.46676269._036636.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 14:54:24] 2025-10-10 18:53:45,749 | INFO     | stage-out finished correctly
[2025-10-10 14:54:24] 2025-10-10 18:53:46,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | job 6837558295 has state=finished
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | preparing for final server update for job 6837558295 in state='finished'
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | this job has now completed (state=finished)
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | log transfer has been attempted: DONE
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | job 6837558295 has finished - writing final server update
[2025-10-10 14:54:24] 2025-10-10 18:53:46,565 | INFO     | total number of processed events: 400 (read)
[2025-10-10 14:54:24] 2025-10-10 18:53:46,566 | INFO     | executing command: lscpu
[2025-10-10 14:54:24] 2025-10-10 18:53:46,631 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 14:54:24] 2025-10-10 18:53:47,056 | INFO     | PID=2239822 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-10 14:54:24] 2025-10-10 18:53:47,059 | INFO     | .. there are 42 such processes running
[2025-10-10 14:54:24] 2025-10-10 18:53:47,234 | INFO     | monitor loop #230: job 0:6837558295 is in state 'finished'
[2025-10-10 14:54:24] 2025-10-10 18:53:47,235 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:54:24] 2025-10-10 18:53:48,059 | INFO     | time since job start (3528s) is within the limit (172800.0s)
[2025-10-10 14:54:24] 2025-10-10 18:53:49,739 | INFO     | monitor loop #231: job 0:6837558295 is in state 'finished'
[2025-10-10 14:54:24] 2025-10-10 18:53:49,739 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 14:54:24] 2025-10-10 18:53:50,064 | INFO     | time since job start (3530s) is within the limit (172800.0s)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,643 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 14:54:24] 2025-10-10 18:53:51,650 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1860234374935
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6837558295/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | INFO     | extracted standard info from prmon json
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 14:54:24] 2025-10-10 18:53:51,663 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | fitting pss+swap vs Time
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | sum of square deviations: 41119856.98039215
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | sum of deviations: -306979227.0784314
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | mean x: 1760120756.0196078
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | mean y: 2445083.0784313725
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | -- intersect: 13142580991.266376
[2025-10-10 14:54:24] 2025-10-10 18:53:51,664 | INFO     | intersect: 13142580991.266376
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | chi2: 0.00253115433571397
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | -- intersect: 13142580991.266376
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | current memory leak: -7.47 B/s (using 51 data points, chi2=0.00)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | could have reported an average CPU frequency of 3761 MHz (5 samples)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | ..............................
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . Timing measurements:
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . get job = 0 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . initial setup = 2 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . payload setup = 5 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . stage-in = 0 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . payload execution = 3500 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . stage-out = 0 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | . log creation = 0 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,665 | INFO     | ..............................
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | 
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | job summary report
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | --------------------------------------------------
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | PanDA job id: 6837558295
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | task id: 46676269
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | errors: (none)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | pilot state: finished 
[2025-10-10 14:54:24] 2025-10-10 18:53:51,715 | INFO     | transexitcode: 0
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | exeerrorcode: 0
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | exeerrordiag: 
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | exitcode: 0
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | exitmsg: OK
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | cpuconsumptiontime: 23485 s
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | nevents: 400
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | neventsw: 0
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | pid: 2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | pgrp: 2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | corecount: 11
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | event service: False
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | sizes: {0: 2348800, 4: 2349062, 11: 2349090, 3509: 2374878, 3510: 2383876, 3511: 2383932, 3516: 2384286}
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | --------------------------------------------------
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | 
[2025-10-10 14:54:24] 2025-10-10 18:53:51,716 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | job 6837558295 has completed (purged errors)
[2025-10-10 14:54:24] 2025-10-10 18:53:51,737 | INFO     | overall cleanup function is called
[2025-10-10 14:54:24] 2025-10-10 18:53:52,745 | INFO     | --- collectZombieJob: --- 10, [2263523]
[2025-10-10 14:54:24] 2025-10-10 18:53:52,746 | INFO     | zombie collector waiting for pid 2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:52,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 14:54:24] 2025-10-10 18:53:52,746 | INFO     | collected zombie processes
[2025-10-10 14:54:24] 2025-10-10 18:53:52,746 | INFO     | will attempt to kill all subprocesses of pid=2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:53,206 | INFO     | process IDs to be killed: [2263523] (in reverse order)
[2025-10-10 14:54:24] 2025-10-10 18:53:53,368 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 14:54:24] 2025-10-10 18:53:53,368 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 14:54:24] 2025-10-10 18:53:53,393 | INFO     | did not find any defunct processes belonging to 2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:53,418 | INFO     | did not find any defunct processes belonging to 2263523
[2025-10-10 14:54:24] 2025-10-10 18:53:53,418 | INFO     | ready for new job
[2025-10-10 14:54:24] 2025-10-10 18:53:53,419 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 14:54:24] 2025-10-10 18:53:53,420 | INFO     | ***************************************
[2025-10-10 14:54:24] 2025-10-10 18:53:53,420 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 14:54:24] 2025-10-10 18:53:53,420 | INFO     | ***************************************
[2025-10-10 14:54:24] 2025-10-10 18:53:53,420 | INFO     | 
[2025-10-10 14:54:24] 2025-10-10 18:53:53,425 | INFO     | architecture information:
[2025-10-10 14:54:24] 2025-10-10 18:53:53,425 | INFO     | executing command: cat /etc/os-release
[2025-10-10 14:54:24] 2025-10-10 18:53:53,448 | INFO     | cat /etc/os-release:
[2025-10-10 14:54:24] NAME="CentOS Linux"
[2025-10-10 14:54:24] VERSION="7 (Core)"
[2025-10-10 14:54:24] ID="centos"
[2025-10-10 14:54:24] ID_LIKE="rhel fedora"
[2025-10-10 14:54:24] VERSION_ID="7"
[2025-10-10 14:54:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 14:54:24] ANSI_COLOR="0;31"
[2025-10-10 14:54:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 14:54:24] HOME_URL="https://www.centos.org/"
[2025-10-10 14:54:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 14:54:24] 
[2025-10-10 14:54:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 14:54:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 14:54:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 14:54:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 14:54:24] 
[2025-10-10 14:54:24] 2025-10-10 18:53:53,448 | INFO     | ***************************************
[2025-10-10 14:54:24] 2025-10-10 18:53:53,950 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | INFO     | sufficient remaining disk space (167697711104 B)
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | INFO     | update_server=False
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:54:24] 2025-10-10 18:53:53,963 | INFO     | aborting loop
[2025-10-10 14:54:24] 2025-10-10 18:53:53,964 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 14:54:24] 2025-10-10 18:53:54,052 | INFO     | all job control threads have been joined
[2025-10-10 14:54:24] 2025-10-10 18:53:54,236 | INFO     | all data control threads have been joined
[2025-10-10 14:54:24] 2025-10-10 18:53:54,968 | INFO     | [job] retrieve thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:54,968 | INFO     | [job] job monitor thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,045 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,057 | INFO     | [job] control thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,242 | INFO     | [data] control thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,312 | INFO     | [job] validate thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,362 | INFO     | all payload control threads have been joined
[2025-10-10 14:54:24] 2025-10-10 18:53:55,703 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,705 | INFO     | [data] copytool_in thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,712 | INFO     | [payload] validate_post thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,719 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:55,969 | INFO     | [data] copytool_out thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:56,078 | INFO     | [payload] failed_post thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:56,366 | INFO     | [payload] control thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:53:56,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 14:54:24] 2025-10-10 18:53:57,008 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 14:54:24] 2025-10-10 18:53:57,736 | INFO     | [job] queue monitor thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:54:01,019 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:54:04,646 | INFO     | job.realtimelogging is not enabled
[2025-10-10 14:54:24] 2025-10-10 18:54:05,652 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 14:54:24] 2025-10-10 18:54:06,032 | INFO     | [monitor] cgroup control has ended
[2025-10-10 14:54:24] 2025-10-10 18:54:06,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139879946446656)>', '<ExcThread(monitor, started 139879090480896)>']
[2025-10-10 14:54:24] 2025-10-10 18:54:11,514 | INFO     | all workflow threads have been joined
[2025-10-10 14:54:24] 2025-10-10 18:54:11,516 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 14:54:24] 2025-10-10 18:54:11,516 | INFO     | traces error code: 0
[2025-10-10 14:54:24] 2025-10-10 18:54:11,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 14:54:24] 2025-10-10 18:54:23,807 | INFO     | PID=2239822 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 14:54:24] 2025-10-10 18:54:23,808 | INFO     | .. there are 41 such processes running
[2025-10-10 14:54:24] 2025-10-10 18:54:23,809 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 14:54:24] 2025-10-10 18:54:23,809 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 14:54:24] 2025-10-10 18:54:23,809 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 14:54:24] 2025-10-10 18:54:23,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 14:54:24] 2025-10-10 18:54:23,809 | INFO     | [monitor] control thread has ended
[2025-10-10 14:54:24] 2025-10-10 18:54:23,938 [wrapper] ==== pilot stdout END ====
[2025-10-10 14:54:24] 2025-10-10 18:54:23,941 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 14:54:24] 2025-10-10 18:54:23,946 [wrapper] pilotpid: 2239822
[2025-10-10 14:54:24] 2025-10-10 18:54:23,951 [wrapper] Pilot exit status: 0
[2025-10-10 14:54:24] 2025-10-10 18:54:23,981 [wrapper] pandaids: 6837558295
[2025-10-10 14:54:24] 2025-10-10 18:54:24,110 [wrapper] cleanup supervisor_pilot 2531011 2239824
[2025-10-10 14:54:24] 2025-10-10 18:54:24,120 [wrapper] Test setup, not cleaning
[2025-10-10 14:54:24] 2025-10-10 18:54:24,124 [wrapper] apfmon messages muted
[2025-10-10 14:54:24] 2025-10-10 18:54:24,139 [wrapper] ==== wrapper stdout END ====
[2025-10-10 14:54:24] 2025-10-10 18:54:24,141 [wrapper] ==== wrapper stderr END ====
[2025-10-10 14:54:24]  *** Error codes and diagnostics ***
[2025-10-10 14:54:24]     "exeErrorCode": 0,
[2025-10-10 14:54:24]     "exeErrorDiag": "",
[2025-10-10 14:54:24]     "pilotErrorCode": 0,
[2025-10-10 14:54:24]     "pilotErrorDiag": "",
[2025-10-10 14:54:24]  *** Listing of results directory ***
[2025-10-10 14:54:24] total 413332
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 05:49 pilot3.tar.gz
[2025-10-10 14:54:24] -rwx------. 1 boincer umatlas     36292 Oct 10 06:20 runpilot2-wrapper.sh
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 06:20 queuedata.json
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas       100 Oct 10 13:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 14:54:24] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 13:54 run_atlas
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas       105 Oct 10 13:54 job.xml
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas 223017303 Oct 10 13:54 EVNT.46676267._001489.pool.root.1
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:54 start_atlas.sh
[2025-10-10 14:54:24] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 13:54 shared
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas    569670 Oct 10 13:54 input.tar.gz
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas         0 Oct 10 13:54 boinc_lockfile
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas      2546 Oct 10 13:54 pandaJob.out
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas    975525 Oct 10 13:54 agis_schedconf.cvmfs.json
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas   1560580 Oct 10 13:54 agis_ddmendpoints.agis.ALL.json
[2025-10-10 14:54:24] drwx------. 5 boincer umatlas      4096 Oct 10 13:55 pilot3
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas      7160 Oct 10 14:45 init_data.xml
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas 194654660 Oct 10 14:53 HITS.46676269._036636.pool.root.1
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas       529 Oct 10 14:53 boinc_task_state.xml
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas      1033 Oct 10 14:53 memory_monitor_summary.json
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas    337790 Oct 10 14:53 log.46676269._036636.job.log.tgz.1
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas      7768 Oct 10 14:53 heartbeat.json
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 14:54 boinc_mmap_file
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas        27 Oct 10 14:54 wrapper_checkpoint.txt
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas       823 Oct 10 14:54 pilotlog.txt
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas        95 Oct 10 14:54 pilot_heartbeat.json
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas    500249 Oct 10 14:54 log.46676269._036636.job.log.1
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas       357 Oct 10 14:54 output.list
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas       620 Oct 10 14:54 runtime_log
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas    860160 Oct 10 14:54 result.tar.gz
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas       650 Oct 10 14:54 TYjNDmFQPR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDme0cNDmwZ5KEo.diag
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas      8695 Oct 10 14:54 runtime_log.err
[2025-10-10 14:54:24] -rw-r--r--. 1 boincer umatlas     21945 Oct 10 14:54 stderr.txt
[2025-10-10 14:54:24] HITS file was successfully produced:
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas 194654660 Oct 10 14:53 shared/HITS.pool.root.1
[2025-10-10 14:54:24]  *** Contents of shared directory: ***
[2025-10-10 14:54:24] total 409308
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas 223017303 Oct 10 13:54 ATLAS.root_0
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:54 start_atlas.sh
[2025-10-10 14:54:24] -rw-r--r--. 2 boincer umatlas    569670 Oct 10 13:54 input.tar.gz
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas 194654660 Oct 10 14:53 HITS.pool.root.1
[2025-10-10 14:54:24] -rw-------. 1 boincer umatlas    860160 Oct 10 14:54 result.tar.gz
14:54:25 (2230664): run_atlas exited; CPU time 23593.559931
14:54:25 (2230664): called boinc_finish(0)

</stderr_txt>
]]>

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