Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 15:19:08 (25564): vboxwrapper version 26210
2025-10-10 15:19:08 (25564): BOINC client version: 8.2.5
2025-10-10 15:19:09 (25564): Detected: VirtualBox VboxManage Interface (Version: 7.2.2)
2025-10-10 15:19:09 (25564): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 15:19:09 (25564): Create VM. (boinc_0c51393c422b527a, slot#1)
2025-10-10 15:19:10 (25564): Setting Memory Size for VM. (4300MB)
2025-10-10 15:19:10 (25564): Setting CPU Count for VM. (3)
2025-10-10 15:19:10 (25564): Setting Chipset Options for VM.
2025-10-10 15:19:11 (25564): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 15:19:11 (25564): Setting Boot Options for VM.
2025-10-10 15:19:11 (25564): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 15:19:12 (25564): Enabling VM Network Access.
2025-10-10 15:19:12 (25564): Disabling USB Support for VM.
2025-10-10 15:19:12 (25564): Disabling COM Port Support for VM.
2025-10-10 15:19:12 (25564): Disabling LPT Port Support for VM.
2025-10-10 15:19:13 (25564): Disabling Audio Support for VM.
2025-10-10 15:19:13 (25564): Disabling Clipboard Support for VM.
2025-10-10 15:19:13 (25564): Disabling Drag and Drop Support for VM.
2025-10-10 15:19:13 (25564): Adding storage controller(s) to VM.
2025-10-10 15:19:14 (25564): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 15:19:14 (25564): Adding VirtualBox Guest Additions to VM.
2025-10-10 15:19:14 (25564): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 15:19:15 (25564): forwarding host port 59293 to guest port 80
2025-10-10 15:19:15 (25564): Enabling remote desktop for VM.
2025-10-10 15:19:16 (25564): Enabling shared directory for VM.
2025-10-10 15:19:16 (25564): Starting VM using VBoxManage interface. (boinc_0c51393c422b527a, slot#1)
2025-10-10 15:19:21 (25564): Successfully started VM. (PID = '12092')
2025-10-10 15:19:21 (25564): Reporting VM Process ID to BOINC.
2025-10-10 15:19:21 (25564): Guest Log: BIOS: VirtualBox 7.2.2
2025-10-10 15:19:21 (25564): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 15:19:21 (25564): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 15:19:21 (25564): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 15:19:21 (25564): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 15:19:21 (25564): Detected: Web Application Enabled (http://localhost:59293)
2025-10-10 15:19:21 (25564): Detected: Remote Desktop Enabled (localhost:59294)
2025-10-10 15:19:21 (25564): Preference change detected
2025-10-10 15:19:21 (25564): Setting CPU throttle for VM. (100%)
2025-10-10 15:19:21 (25564): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 15:19:23 (25564): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 15:19:23 (25564): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 15:19:26 (25564): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 15:19:26 (25564): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 15:19:26 (25564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 15:19:30 (25564): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 15:19:30 (25564): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-10-10 15:19:33 (25564): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000065 main     Log opened 2025-10-10T15:19:31.708546000Z
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000127 main     OS Product: Linux
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000146 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000160 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000174 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000175 main     Process ID: 1288
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000175 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 15:19:33 (25564): Guest Log: 00:00:00.000632 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 15:19:33 (25564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 15:19:33 (25564): Guest Log: [INFO] Mounting shared directory
2025-10-10 15:19:33 (25564): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 15:19:36 (25564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 15:19:36 (25564): Guest Log: [INFO] Detected branch: prod
2025-10-10 15:19:36 (25564): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 15:19:36 (25564): Guest Log: Copying input files
2025-10-10 15:19:36 (25564): Guest Log: Copied input files into RunAtlas.
2025-10-10 15:19:36 (25564): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 15:19:36 (25564): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 15:19:36 (25564): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 15:19:36 (25564): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 15:19:43 (25564): Guest Log: 00:00:10.003177 timesync vgsvcTimeSyncWorker: Radical guest time change: 14 411 471 121 000ns (GuestNow=1 760 123 983 181 367 000 ns GuestLast=1 760 109 571 710 246 000 ns fSetTimeLastLoop=true )
2025-10-10 15:20:43 (25564): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 15:20:43 (25564): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 15:20:43 (25564): Guest Log: 2.6.3.0 1567 1 30160 151559 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 15:20:43 (25564): Guest Log: copied the webapp to /var/www
2025-10-10 15:20:43 (25564): Guest Log: ATHENA_PROC_NUMBER=3
2025-10-10 15:20:43 (25564): Guest Log: ATHENA_CORE_NUMBER=3
2025-10-10 15:20:44 (25564): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 15:20:44 (25564): Guest Log:  *** Starting ATLAS job. (PandaID=6837556767 taskID=46676269) ***
2025-10-10 16:59:23 (25564): Status Report: Elapsed Time: '6000.000000'
2025-10-10 16:59:23 (25564): Status Report: CPU Time: '17065.671875'
2025-10-10 17:53:39 (25564): Guest Log:  *** Job finished ***
2025-10-10 17:53:39 (25564): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:14,519 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:14,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:28,427 | INFO     | [monitor] cgroup control has ended
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:29,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140122501310272)>', '<ExcThread(monitor, started 140122200717056)>']
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:30,093 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:30,093 | INFO     | [monitor] control thread has ended
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,366 | INFO     | all workflow threads have been joined
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,366 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,366 | INFO     | traces error code: 0
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,366 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,431 [wrapper] ==== pilot stdout END ====
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,434 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,436 [wrapper] pilotpid: 5950
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,438 [wrapper] Pilot exit status: 0
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,477 [wrapper] pandaids: 6837556767
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,494 [wrapper] cleanup supervisor_pilot  7863 5951
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,497 [wrapper] Test setup, not cleaning
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,500 [wrapper] apfmon messages muted
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,502 [wrapper] ==== wrapper stdout END ====
2025-10-10 17:53:39 (25564): Guest Log: 2025-10-10 21:53:34,505 [wrapper] ==== wrapper stderr END ====
2025-10-10 17:53:39 (25564): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 17:53:39 (25564): Guest Log:     "exeErrorCode": 0,
2025-10-10 17:53:39 (25564): Guest Log:     "exeErrorDiag": "",
2025-10-10 17:53:39 (25564): Guest Log:     "pilotErrorCode": 0,
2025-10-10 17:53:39 (25564): Guest Log:     "pilotErrorDiag": "",
2025-10-10 17:53:39 (25564): Guest Log:  *** Listing of results directory ***
2025-10-10 17:53:39 (25564): Guest Log: total 197652
2025-10-10 17:53:39 (25564): Guest Log: -rw-r--r--. 1 atlas atlas    557409 Oct 10 09:06 pilot3.tar.gz
2025-10-10 17:53:39 (25564): Guest Log: -rwx------. 1 atlas atlas     36292 Oct 10 09:34 runpilot2-wrapper.sh
2025-10-10 17:53:39 (25564): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Oct 10 09:34 queuedata.json
2025-10-10 17:53:39 (25564): Guest Log: -rwxr-xr-x. 1 atlas atlas      9027 Oct 10 19:19 init_data.xml
2025-10-10 17:53:39 (25564): Guest Log: -rwxr-xr-x. 1 atlas atlas    569677 Oct 10 19:19 input.tar.gz
2025-10-10 17:53:39 (25564): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 19:19 start_atlas.sh
2025-10-10 17:53:39 (25564): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 19:19 EVNT.46676267._001471.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 17:53:39 (25564): Guest Log: -rw-r--r--. 1 atlas atlas      2549 Oct 10 19:20 pandaJob.out
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas    975541 Oct 10 19:21 agis_schedconf.cvmfs.json
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 19:21 agis_ddmendpoints.agis.ALL.json
2025-10-10 17:53:39 (25564): Guest Log: drwx------. 5 atlas atlas      4096 Oct 10 19:21 pilot3
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas 195446124 Oct 10 21:52 HITS.46676269._036188.pool.root.1
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 21:52 pilot_heartbeat.json
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas      1024 Oct 10 21:52 memory_monitor_summary.json
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas    296559 Oct 10 21:52 log.46676269._036188.job.log.tgz.1
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas      7778 Oct 10 21:52 heartbeat.json
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas      4877 Oct 10 21:53 pilotlog.txt
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas   1258363 Oct 10 21:53 log.46676269._036188.job.log.1
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 21:53 output.list
2025-10-10 17:53:39 (25564): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 21:53 runtime_log
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas   1576960 Oct 10 21:53 result.tar.gz
2025-10-10 17:53:39 (25564): Guest Log: -rw-r--r--. 1 atlas atlas      8636 Oct 10 21:53 runtime_log.err
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas       652 Oct 10 21:53 7xkNDmChOR8n9Rq4apOajLDm4fhM0noT9bVof3QYDmajPMDm3qCAom.diag
2025-10-10 17:53:39 (25564): Guest Log: Looking for outputfile HITS.46676269._036188.pool.root.1
2025-10-10 17:53:39 (25564): Guest Log: HITS file was successfully produced
2025-10-10 17:53:39 (25564): Guest Log: -rw-------. 1 atlas atlas 195446124 Oct 10 21:52 /home/atlas/RunAtlas/HITS.46676269._036188.pool.root.1
2025-10-10 17:53:39 (25564): Guest Log: Successfully finished the ATLAS job!
2025-10-10 17:53:39 (25564): Guest Log: Copying the results back to the shared directory!
2025-10-10 17:53:39 (25564): Guest Log:  *** Contents of shared directory: ***
2025-10-10 17:53:39 (25564): Guest Log: total 410328
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root 222544344 Oct 10 19:19 ATLAS.root_0
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root 195446124 Oct 10  2025 HITS.pool.root.1
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root      9027 Oct 10 19:19 init_data.xml
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root    569677 Oct 10 17:31 input.tar.gz
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root   1576960 Oct 10  2025 result.tar.gz
2025-10-10 17:53:39 (25564): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 17:31 start_atlas.sh
2025-10-10 17:53:39 (25564): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 17:53:39 (25564): VM Completion File Detected.
2025-10-10 17:53:39 (25564): Powering off VM.
2025-10-10 17:53:40 (25564): Successfully stopped VM.
2025-10-10 17:53:40 (25564): Deregistering VM. (boinc_0c51393c422b527a, slot#1)
2025-10-10 17:53:40 (25564): Removing network bandwidth throttle group from VM.
2025-10-10 17:53:40 (25564): Removing VM from VirtualBox.
2025-10-10 17:53:45 (25564): called boinc_finish(0)

</stderr_txt>
]]>

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