Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2025-10-10 13:42:30 (122764): vboxwrapper version 26210
2025-10-10 13:42:30 (122764): BOINC client version: 7.16.11
2025-10-10 13:42:30 (122764): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2025-10-10 13:42:31 (122764): Successfully copied 'init_data.xml' to the shared directory.
2025-10-10 13:42:31 (122764): Create VM. (boinc_912979eeff98678e, slot#3)
2025-10-10 13:42:31 (122764): Setting Memory Size for VM. (4400MB)
2025-10-10 13:42:32 (122764): Setting CPU Count for VM. (4)
2025-10-10 13:42:32 (122764): Setting Chipset Options for VM.
2025-10-10 13:42:32 (122764): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-10-10 13:42:32 (122764): Setting Boot Options for VM.
2025-10-10 13:42:33 (122764): Setting Network Configuration for NAT. (Driver: virtio)
2025-10-10 13:42:33 (122764): Enabling VM Network Access.
2025-10-10 13:42:33 (122764): Disabling USB Support for VM.
2025-10-10 13:42:34 (122764): Disabling COM Port Support for VM.
2025-10-10 13:42:34 (122764): Disabling LPT Port Support for VM.
2025-10-10 13:42:34 (122764): Disabling Audio Support for VM.
2025-10-10 13:42:35 (122764): Disabling Clipboard Support for VM.
2025-10-10 13:42:35 (122764): Disabling Drag and Drop Support for VM.
2025-10-10 13:42:35 (122764): Adding storage controller(s) to VM.
2025-10-10 13:42:35 (122764): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-10-10 13:42:36 (122764): Adding VirtualBox Guest Additions to VM.
2025-10-10 13:42:36 (122764): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-10-10 13:42:36 (122764): forwarding host port 57840 to guest port 80
2025-10-10 13:42:37 (122764): Enabling remote desktop for VM.
2025-10-10 13:42:37 (122764): Required extension pack not installed, remote desktop not enabled.
2025-10-10 13:42:37 (122764): Enabling shared directory for VM.
2025-10-10 13:42:37 (122764): Starting VM using VBoxManage interface. (boinc_912979eeff98678e, slot#3)
2025-10-10 13:42:41 (122764): Successfully started VM. (PID = '122144')
2025-10-10 13:42:41 (122764): Reporting VM Process ID to BOINC.
2025-10-10 13:42:41 (122764): Guest Log: BIOS: VirtualBox 6.1.12
2025-10-10 13:42:41 (122764): Guest Log: CPUID EDX: 0x178bfbff
2025-10-10 13:42:41 (122764): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-10-10 13:42:41 (122764): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-10-10 13:42:41 (122764): VM state change detected. (old = 'poweredoff', new = 'running')
2025-10-10 13:42:41 (122764): Detected: Web Application Enabled (http://localhost:57840)
2025-10-10 13:42:41 (122764): Preference change detected
2025-10-10 13:42:41 (122764): Setting CPU throttle for VM. (100%)
2025-10-10 13:42:42 (122764): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-10-10 13:42:43 (122764): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-10-10 13:42:43 (122764): Guest Log: BIOS: Booting from Hard Disk...
2025-10-10 13:42:46 (122764): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-10-10 13:42:46 (122764): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-10-10 13:42:46 (122764): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-10-10 13:42:53 (122764): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-10-10 13:42:53 (122764): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-10-10 13:43:00 (122764): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000157 main     Log opened 2025-10-10T13:42:58.023633000Z
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000245 main     OS Product: Linux
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000277 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000305 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000332 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000333 main     Process ID: 1306
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.000333 main     Package type: LINUX_64BITS_GENERIC
2025-10-10 13:43:00 (122764): Guest Log: 00:00:00.002523 main     5.2.32 r132073 started. Verbose level = 0
2025-10-10 13:43:00 (122764): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-10-10 13:43:00 (122764): Guest Log: [INFO] Mounting shared directory
2025-10-10 13:43:00 (122764): Guest Log: [INFO] Checking for init_data.xml
2025-10-10 13:43:04 (122764): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-10-10 13:43:04 (122764): Guest Log: [INFO] Detected branch: prod
2025-10-10 13:43:04 (122764): Guest Log: This is the prod version of the ATLAS job wrapper
2025-10-10 13:43:04 (122764): Guest Log: Copying input files
2025-10-10 13:43:06 (122764): Guest Log: Copied input files into RunAtlas.
2025-10-10 13:43:06 (122764): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-10-10 13:43:06 (122764): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-10-10 13:43:06 (122764): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-10-10 13:43:06 (122764): Guest Log: Further information can be found at the LHC@home message board.
2025-10-10 13:43:10 (122764): Guest Log: 00:00:10.010819 timesync vgsvcTimeSyncWorker: Radical guest time change: 21 612 262 307 000ns (GuestNow=1 760 125 390 290 278 000 ns GuestLast=1 760 103 778 027 971 000 ns fSetTimeLastLoop=true )
2025-10-10 13:43:17 (122764): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-10-10 13:43:17 (122764): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-10-10 13:43:17 (122764): Guest Log: 2.6.3.0 1602 0 32208 151559 3 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-10-10 13:43:18 (122764): Guest Log: copied the webapp to /var/www
2025-10-10 13:43:18 (122764): Guest Log: ATHENA_PROC_NUMBER=4
2025-10-10 13:43:18 (122764): Guest Log: ATHENA_CORE_NUMBER=4
2025-10-10 13:43:18 (122764): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-10-10 13:43:19 (122764): Guest Log:  *** Starting ATLAS job. (PandaID=6826120295 taskID=46373048) ***
2025-10-10 15:25:33 (122764): Status Report: Elapsed Time: '6000.209925'
2025-10-10 15:25:33 (122764): Status Report: CPU Time: '21785.312500'
2025-10-10 17:09:01 (122764): Status Report: Elapsed Time: '12000.520193'
2025-10-10 17:09:01 (122764): Status Report: CPU Time: '46075.953125'
2025-10-10 17:38:05 (122764): Guest Log:  *** Job finished ***
2025-10-10 17:38:05 (122764): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | INFO     | PID=5996 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | INFO     | found 0 job(s) in 20 queues
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:01,033 | INFO     | [monitor] control thread has ended
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:04,999 | INFO     | all workflow threads have been joined
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,000 | INFO     | end of generic workflow (traces error code: 0)
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,000 | INFO     | traces error code: 0
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,000 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,099 [wrapper] ==== pilot stdout END ====
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,105 [wrapper] ==== wrapper stdout RESUME ====
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,111 [wrapper] pilotpid: 5996
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,117 [wrapper] Pilot exit status: 0
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,210 [wrapper] pandaids: 6826120295
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,253 [wrapper] cleanup supervisor_pilot 14011 5997
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,260 [wrapper] Test setup, not cleaning
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,267 [wrapper] apfmon messages muted
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,272 [wrapper] ==== wrapper stdout END ====
2025-10-10 17:38:05 (122764): Guest Log: 2025-10-10 23:38:05,278 [wrapper] ==== wrapper stderr END ====
2025-10-10 17:38:05 (122764): Guest Log:  *** Error codes and diagnostics ***
2025-10-10 17:38:05 (122764): Guest Log:     "exeErrorCode": 0,
2025-10-10 17:38:05 (122764): Guest Log:     "exeErrorDiag": "",
2025-10-10 17:38:05 (122764): Guest Log:     "pilotErrorCode": 0,
2025-10-10 17:38:05 (122764): Guest Log:     "pilotErrorDiag": "",
2025-10-10 17:38:05 (122764): Guest Log:  *** Listing of results directory ***
2025-10-10 17:38:05 (122764): Guest Log: total 199984
2025-10-10 17:38:05 (122764): Guest Log: -rw-r--r--. 1 atlas atlas    552446 Sep 30 17:16 pilot3.tar.gz
2025-10-10 17:38:05 (122764): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Sep 30 17:31 queuedata.json
2025-10-10 17:38:05 (122764): Guest Log: -rwx------. 1 atlas atlas     36292 Sep 30 17:32 runpilot2-wrapper.sh
2025-10-10 17:38:05 (122764): Guest Log: -rwxr-xr-x. 1 atlas atlas     12101 Oct 10 19:43 init_data.xml
2025-10-10 17:38:05 (122764): Guest Log: -rwxr-xr-x. 1 atlas atlas    565604 Oct 10 19:43 input.tar.gz
2025-10-10 17:38:05 (122764): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Oct 10 19:43 start_atlas.sh
2025-10-10 17:38:05 (122764): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Oct 10 19:43 EVNT.46373045._002183.pool.root.1 -> /data/./ATLAS.root_0
2025-10-10 17:38:05 (122764): Guest Log: -rw-r--r--. 1 atlas atlas      2538 Oct 10 19:43 pandaJob.out
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas    975541 Oct 10 19:44 agis_schedconf.cvmfs.json
2025-10-10 17:38:05 (122764): Guest Log: drwx------. 4 atlas atlas      4096 Oct 10 19:44 pilot3
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas 196492056 Oct 10 23:36 HITS.46373048._067304.pool.root.1
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas      1032 Oct 10 23:37 memory_monitor_summary.json
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas   1560580 Oct 10 23:37 agis_ddmendpoints.agis.ALL.json
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas    382660 Oct 10 23:37 log.46373048._067304.job.log.tgz.1
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas      7827 Oct 10 23:37 heartbeat.json
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas        95 Oct 10 23:37 pilot_heartbeat.json
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas      4805 Oct 10 23:38 pilotlog.txt
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas   1852158 Oct 10 23:38 log.46373048._067304.job.log.1
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas       357 Oct 10 23:38 output.list
2025-10-10 17:38:05 (122764): Guest Log: -rw-r--r--. 1 atlas atlas       620 Oct 10 23:38 runtime_log
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas   2252800 Oct 10 23:38 result.tar.gz
2025-10-10 17:38:05 (122764): Guest Log: -rw-r--r--. 1 atlas atlas      8679 Oct 10 23:38 runtime_log.err
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas       671 Oct 10 23:38 2XnMDmXOtN8n9Rq4apOajLDm4fhM0noT9bVof3QYDmxd6LDmtRuFvm.diag
2025-10-10 17:38:05 (122764): Guest Log: Looking for outputfile HITS.46373048._067304.pool.root.1
2025-10-10 17:38:05 (122764): Guest Log: HITS file was successfully produced
2025-10-10 17:38:05 (122764): Guest Log: -rw-------. 1 atlas atlas 196492056 Oct 10 23:36 /home/atlas/RunAtlas/HITS.46373048._067304.pool.root.1
2025-10-10 17:38:06 (122764): Guest Log: Successfully finished the ATLAS job!
2025-10-10 17:38:06 (122764): Guest Log: Copying the results back to the shared directory!
2025-10-10 17:38:07 (122764): Guest Log:  *** Contents of shared directory: ***
2025-10-10 17:38:07 (122764): Guest Log: total 410120
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root 220614827 Oct 10 19:42 ATLAS.root_0
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root 196492056 Oct 10 23:38 HITS.pool.root.1
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root     12101 Oct 10 19:42 init_data.xml
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root    565604 Oct 10 17:35 input.tar.gz
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root   2252800 Oct 10 23:38 result.tar.gz
2025-10-10 17:38:07 (122764): Guest Log: -rwxrwxrwx. 1 root root     15120 Oct 10 17:35 start_atlas.sh
2025-10-10 17:38:07 (122764): Guest Log:  *** Success! Shutting down the machine. ***
2025-10-10 17:38:07 (122764): VM Completion File Detected.
2025-10-10 17:38:07 (122764): Powering off VM.
2025-10-10 17:38:08 (122764): Successfully stopped VM.
2025-10-10 17:38:08 (122764): Deregistering VM. (boinc_912979eeff98678e, slot#3)
2025-10-10 17:38:08 (122764): Removing network bandwidth throttle group from VM.
2025-10-10 17:38:08 (122764): Removing VM from VirtualBox.
2025-10-10 17:38:14 (122764): called boinc_finish(0)

</stderr_txt>
]]>

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