Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
18:10:54 (333981): wrapper (7.7.26015): starting
18:10:54 (333981): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 18:10:54] Arguments: --nthreads 12
[2025-10-10 18:10:54] Threads: 12
[2025-10-10 18:10:54] Checking for CVMFS
[2025-10-10 18:10:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 18:10:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 18:10:54] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 18:10:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 18:10:54] 2.13.2.0 3843265 2166 61008 151564 3 188 6139959 6144000 3668 130560 0 12959657 99.998 195942 550 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-10 18:10:54] CVMFS is ok
[2025-10-10 18:10:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 18:10:54] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-10 18:10:54] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-10 18:10:54] Further information can be found at the LHC@home message board.
[2025-10-10 18:10:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 18:10:54] Checking for apptainer binary...
[2025-10-10 18:10:54] apptainer is not installed, using version from CVMFS
[2025-10-10 18:10:54] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 18:10:55] XeonFire
[2025-10-10 18:10:55] apptainer works
[2025-10-10 18:10:55] Set ATHENA_PROC_NUMBER=12
[2025-10-10 18:10:55] Set ATHENA_CORE_NUMBER=12
[2025-10-10 18:10:55] Starting ATLAS job with PandaID=6837508477
[2025-10-10 18:10:55] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 19:07:31]  *** The last 200 lines of the pilot log: ***
[2025-10-10 19:07:31] 2025-10-11 00:06:28,628 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6837508477/log.46676269._034348.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.466762
[2025-10-10 19:07:31] 2025-10-11 00:06:28,651 | INFO     | adding to output.list: log.46676269._034348.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/d5/34/log.46676269._034348.job.log.tg
[2025-10-10 19:07:31] 2025-10-11 00:06:28,652 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 19:07:31] 2025-10-11 00:06:28,652 | INFO     | summary of transferred files:
[2025-10-10 19:07:31] 2025-10-11 00:06:28,652 | INFO     |  -- lfn=log.46676269._034348.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 19:07:31] 2025-10-11 00:06:28,652 | INFO     | stage-out finished correctly
[2025-10-10 19:07:31] 2025-10-11 00:06:28,927 | INFO     | time since job start (3308s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:29,808 | WARNING  | process 345079 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 19:07:31] 2025-10-11 00:06:29,808 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6837508477/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 19:07:31] 2025-10-11 00:06:30,207 | INFO     | number of running child processes to parent process 345079: 1
[2025-10-10 19:07:31] 2025-10-11 00:06:30,207 | INFO     | maximum number of monitored processes: 6
[2025-10-10 19:07:31] 2025-10-11 00:06:30,930 | INFO     | time since job start (3310s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:32,137 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 19:07:31] 2025-10-11 00:06:32,711 | INFO     | monitor loop #244: job 0:6837508477 is in state 'finished'
[2025-10-10 19:07:31] 2025-10-11 00:06:32,711 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 19:07:31] 2025-10-11 00:06:32,932 | INFO     | time since job start (3312s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:34,938 | INFO     | time since job start (3314s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:35,213 | INFO     | job 6837508477 has state=finished
[2025-10-10 19:07:31] 2025-10-11 00:06:35,213 | INFO     | preparing for final server update for job 6837508477 in state='finished'
[2025-10-10 19:07:31] 2025-10-11 00:06:35,214 | INFO     | this job has now completed (state=finished)
[2025-10-10 19:07:31] 2025-10-11 00:06:35,214 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 19:07:31] 2025-10-11 00:06:35,214 | INFO     | monitor loop #245: job 0:6837508477 is in state 'finished'
[2025-10-10 19:07:31] 2025-10-11 00:06:35,214 | INFO     | log transfer has been attempted: DONE
[2025-10-10 19:07:31] 2025-10-11 00:06:35,215 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 19:07:31] 2025-10-11 00:06:35,215 | INFO     | job 6837508477 has finished - writing final server update
[2025-10-10 19:07:31] 2025-10-11 00:06:35,215 | INFO     | total number of processed events: 400 (read)
[2025-10-10 19:07:31] 2025-10-11 00:06:35,217 | INFO     | executing command: lscpu
[2025-10-10 19:07:31] 2025-10-11 00:06:35,288 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 19:07:31] 2025-10-11 00:06:36,944 | INFO     | time since job start (3316s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:37,718 | INFO     | monitor loop #246: job 0:6837508477 is in state 'finished'
[2025-10-10 19:07:31] 2025-10-11 00:06:37,718 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 19:07:31] 2025-10-11 00:06:38,444 | INFO     | PID=338050 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 19:07:31] 2025-10-11 00:06:38,444 | INFO     | .. there are 5 such processes running
[2025-10-10 19:07:31] 2025-10-11 00:06:39,445 | INFO     | time since job start (3319s) is within the limit (172800.0s)
[2025-10-10 19:07:31] 2025-10-11 00:06:40,222 | INFO     | monitor loop #247: job 0:6837508477 is in state 'finished'
[2025-10-10 19:07:31] 2025-10-11 00:06:40,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 19:07:31] 2025-10-11 00:06:40,783 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 19:07:31] 2025-10-11 00:06:40,798 | INFO     | found 44 cores (22 cores per socket, 2 sockets) HT, CPU MHz: 2309.6312727272725
[2025-10-10 19:07:31] 2025-10-11 00:06:40,813 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6837508477/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 19:07:31] 2025-10-11 00:06:40,814 | INFO     | extracted standard info from prmon json
[2025-10-10 19:07:31] 2025-10-11 00:06:40,814 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 19:07:31] 2025-10-11 00:06:40,814 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 19:07:31] 2025-10-11 00:06:40,815 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 19:07:31] 2025-10-11 00:06:40,815 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 19:07:31] 2025-10-11 00:06:40,816 | INFO     | fitting pss+swap vs Time
[2025-10-10 19:07:31] 2025-10-11 00:06:40,816 | INFO     | sum of square deviations: 32179208.0
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | sum of deviations: 54677899.00000007
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | mean x: 1760139616.0
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | mean y: 2703824.489361702
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | -- intersect: -2988070098.5216365
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | intersect: -2988070098.5216365
[2025-10-10 19:07:31] 2025-10-11 00:06:40,817 | INFO     | chi2: 0.0340969294498409
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | -- intersect: -2988070098.5216365
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | current memory leak: 1.70 B/s (using 47 data points, chi2=0.03)
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | could have reported an average CPU frequency of 2342 MHz (5 samples)
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | ..............................
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | . Timing measurements:
[2025-10-10 19:07:31] 2025-10-11 00:06:40,818 | INFO     | . get job = 0 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . initial setup = 14 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . payload setup = 6 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . stage-in = 0 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . payload execution = 3281 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . stage-out = 0 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | . log creation = 0 s
[2025-10-10 19:07:31] 2025-10-11 00:06:40,819 | INFO     | ..............................
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | 
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | job summary report
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | --------------------------------------------------
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | PanDA job id: 6837508477
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | task id: 46676269
[2025-10-10 19:07:31] 2025-10-11 00:06:41,283 | INFO     | errors: (none)
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | pilot state: finished 
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | transexitcode: 0
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | exeerrorcode: 0
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | exeerrordiag: 
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | exitcode: 0
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | exitmsg: OK
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | cpuconsumptiontime: 33628 s
[2025-10-10 19:07:31] 2025-10-11 00:06:41,284 | INFO     | nevents: 400
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | neventsw: 0
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | pid: 345079
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | pgrp: 345079
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | corecount: 12
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | event service: False
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | sizes: {0: 2348864, 1: 2348864, 5: 2349154, 11: 2349210, 3291: 2374549, 3292: 2383561, 3295: 2383745, 3304: 2383971}
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | --------------------------------------------------
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | 
[2025-10-10 19:07:31] 2025-10-11 00:06:41,285 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-10 19:07:31] 2025-10-11 00:06:41,311 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,311 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,311 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,311 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,312 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 19:07:31] 2025-10-11 00:06:41,313 | INFO     | job 6837508477 has completed (purged errors)
[2025-10-10 19:07:31] 2025-10-11 00:06:41,314 | INFO     | overall cleanup function is called
[2025-10-10 19:07:31] 2025-10-11 00:06:42,323 | INFO     | --- collectZombieJob: --- 10, [345079]
[2025-10-10 19:07:31] 2025-10-11 00:06:42,323 | INFO     | zombie collector waiting for pid 345079
[2025-10-10 19:07:31] 2025-10-11 00:06:42,323 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 19:07:31] 2025-10-11 00:06:42,323 | INFO     | collected zombie processes
[2025-10-10 19:07:31] 2025-10-11 00:06:42,323 | INFO     | will attempt to kill all subprocesses of pid=345079
[2025-10-10 19:07:31] 2025-10-11 00:06:42,739 | INFO     | process IDs to be killed: [345079] (in reverse order)
[2025-10-10 19:07:31] 2025-10-11 00:06:42,864 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 19:07:31] 2025-10-11 00:06:42,864 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 19:07:31] 2025-10-11 00:06:42,874 | INFO     | did not find any defunct processes belonging to 345079
[2025-10-10 19:07:31] 2025-10-11 00:06:42,882 | INFO     | did not find any defunct processes belonging to 345079
[2025-10-10 19:07:31] 2025-10-11 00:06:42,882 | INFO     | ready for new job
[2025-10-10 19:07:31] 2025-10-11 00:06:42,883 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 19:07:31] 2025-10-11 00:06:42,884 | INFO     | ***************************************
[2025-10-10 19:07:31] 2025-10-11 00:06:42,884 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 19:07:31] 2025-10-11 00:06:42,885 | INFO     | ***************************************
[2025-10-10 19:07:31] 2025-10-11 00:06:42,885 | INFO     | 
[2025-10-10 19:07:31] 2025-10-11 00:06:42,889 | INFO     | architecture information:
[2025-10-10 19:07:31] 2025-10-11 00:06:42,890 | INFO     | executing command: cat /etc/os-release
[2025-10-10 19:07:31] 2025-10-11 00:06:42,905 | INFO     | cat /etc/os-release:
[2025-10-10 19:07:31] NAME="CentOS Linux"
[2025-10-10 19:07:31] VERSION="7 (Core)"
[2025-10-10 19:07:31] ID="centos"
[2025-10-10 19:07:31] ID_LIKE="rhel fedora"
[2025-10-10 19:07:31] VERSION_ID="7"
[2025-10-10 19:07:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 19:07:31] ANSI_COLOR="0;31"
[2025-10-10 19:07:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 19:07:31] HOME_URL="https://www.centos.org/"
[2025-10-10 19:07:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 19:07:31] 
[2025-10-10 19:07:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 19:07:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 19:07:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 19:07:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 19:07:31] 
[2025-10-10 19:07:31] 2025-10-11 00:06:42,905 | INFO     | ***************************************
[2025-10-10 19:07:31] 2025-10-11 00:06:43,408 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-10 19:07:31] 2025-10-11 00:06:43,424 | INFO     | sufficient remaining disk space (1816117903360 B)
[2025-10-10 19:07:31] 2025-10-11 00:06:43,424 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 19:07:31] 2025-10-11 00:06:43,425 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 19:07:31] 2025-10-11 00:06:43,425 | INFO     | update_server=False
[2025-10-10 19:07:31] 2025-10-11 00:06:43,425 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 19:07:31] 2025-10-11 00:06:43,425 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 19:07:31] 2025-10-11 00:06:43,730 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 19:07:31] 2025-10-11 00:06:43,730 | INFO     | aborting loop
[2025-10-10 19:07:31] 2025-10-11 00:06:43,877 | INFO     | all data control threads have been joined
[2025-10-10 19:07:31] 2025-10-11 00:06:44,282 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 19:07:31] 2025-10-11 00:06:44,303 | INFO     | all payload control threads have been joined
[2025-10-10 19:07:31] 2025-10-11 00:06:44,430 | INFO     | [job] retrieve thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:44,433 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:44,657 | INFO     | [data] copytool_in thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:44,683 | INFO     | all job control threads have been joined
[2025-10-10 19:07:31] 2025-10-11 00:06:44,736 | INFO     | [job] job monitor thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:44,758 | INFO     | [payload] validate_post thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:44,883 | INFO     | [data] control thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,151 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,236 | INFO     | [job] validate thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,309 | INFO     | [payload] control thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,574 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,633 | INFO     | [payload] failed_post thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,688 | INFO     | [job] control thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,827 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:45,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 19:07:31] 2025-10-11 00:06:46,288 | INFO     | [data] copytool_out thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:46,938 | INFO     | [job] queue monitor thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:06:47,431 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 19:07:31] 2025-10-11 00:07:12,995 | INFO     | PID=338050 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-10 19:07:31] 2025-10-11 00:07:12,995 | INFO     | .. there are 5 such processes running
[2025-10-10 19:07:31] 2025-10-11 00:07:12,995 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 19:07:31] 2025-10-11 00:07:12,996 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 19:07:31] 2025-10-11 00:07:12,996 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 19:07:31] 2025-10-11 00:07:25,282 | INFO     | [monitor] cgroup control has ended
[2025-10-10 19:07:31] 2025-10-11 00:07:26,569 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137464618911552)>', '<ExcThread(monitor, started 137464068937472)>']
[2025-10-10 19:07:31] 2025-10-11 00:07:27,065 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 19:07:31] 2025-10-11 00:07:27,065 | INFO     | [monitor] control thread has ended
[2025-10-10 19:07:31] 2025-10-11 00:07:31,594 | INFO     | all workflow threads have been joined
[2025-10-10 19:07:31] 2025-10-11 00:07:31,595 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 19:07:31] 2025-10-11 00:07:31,595 | INFO     | traces error code: 0
[2025-10-10 19:07:31] 2025-10-11 00:07:31,595 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 19:07:31] 2025-10-11 00:07:31,696 [wrapper] ==== pilot stdout END ====
[2025-10-10 19:07:31] 2025-10-11 00:07:31,699 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 19:07:31] 2025-10-11 00:07:31,703 [wrapper] pilotpid: 338050
[2025-10-10 19:07:31] 2025-10-11 00:07:31,706 [wrapper] Pilot exit status: 0
[2025-10-10 19:07:31] 2025-10-11 00:07:31,717 [wrapper] pandaids: 6837508477
[2025-10-10 19:07:31] 2025-10-11 00:07:31,786 [wrapper] cleanup supervisor_pilot  450458 338051
[2025-10-10 19:07:31] 2025-10-11 00:07:31,790 [wrapper] Test setup, not cleaning
[2025-10-10 19:07:31] 2025-10-11 00:07:31,793 [wrapper] apfmon messages muted
[2025-10-10 19:07:31] 2025-10-11 00:07:31,797 [wrapper] ==== wrapper stdout END ====
[2025-10-10 19:07:31] 2025-10-11 00:07:31,800 [wrapper] ==== wrapper stderr END ====
[2025-10-10 19:07:31]  *** Error codes and diagnostics ***
[2025-10-10 19:07:31]     "exeErrorCode": 0,
[2025-10-10 19:07:31]     "exeErrorDiag": "",
[2025-10-10 19:07:31]     "pilotErrorCode": 0,
[2025-10-10 19:07:31]     "pilotErrorDiag": "",
[2025-10-10 19:07:31]  *** Listing of results directory ***
[2025-10-10 19:07:31] total 412832
[2025-10-10 19:07:31] -rw-r--r-- 1 mark mark    557409 Oct 10 01:56 pilot3.tar.gz
[2025-10-10 19:07:31] -rw-r--r-- 1 mark mark      5112 Oct 10 02:07 queuedata.json
[2025-10-10 19:07:31] -rwx------ 1 mark mark     36292 Oct 10 02:07 runpilot2-wrapper.sh
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark       100 Oct 10 18:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 19:07:31] -rwxr-xr-x 1 mark mark      7986 Oct 10 18:10 run_atlas
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark       105 Oct 10 18:10 job.xml
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark 223409073 Oct 10 18:10 EVNT.46676267._001397.pool.root.1
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark     15120 Oct 10 18:10 start_atlas.sh
[2025-10-10 19:07:31] drwxrwx--x 2 mark mark      4096 Oct 10 18:10 shared
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark    569684 Oct 10 18:10 input.tar.gz
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark      9229 Oct 10 18:10 init_data.xml
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark         0 Oct 10 18:10 boinc_setup_complete
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark         0 Oct 10 18:10 boinc_lockfile
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark      2550 Oct 10 18:10 pandaJob.out
[2025-10-10 19:07:31] -rw------- 1 mark mark    975517 Oct 10 18:11 agis_schedconf.cvmfs.json
[2025-10-10 19:07:31] -rw------- 1 mark mark   1560580 Oct 10 18:11 agis_ddmendpoints.agis.ALL.json
[2025-10-10 19:07:31] drwx------ 5 mark mark      4096 Oct 10 18:11 pilot3
[2025-10-10 19:07:31] -rw------- 1 mark mark 193669355 Oct 10 19:05 HITS.46676269._034348.pool.root.1
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark       529 Oct 10 19:05 boinc_task_state.xml
[2025-10-10 19:07:31] -rw------- 1 mark mark        95 Oct 10 19:06 pilot_heartbeat.json
[2025-10-10 19:07:31] -rw------- 1 mark mark      1032 Oct 10 19:06 memory_monitor_summary.json
[2025-10-10 19:07:31] -rw------- 1 mark mark    373813 Oct 10 19:06 log.46676269._034348.job.log.tgz.1
[2025-10-10 19:07:31] -rw------- 1 mark mark      7786 Oct 10 19:06 heartbeat.json
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark      8192 Oct 10 19:07 boinc_mmap_file
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark        27 Oct 10 19:07 wrapper_checkpoint.txt
[2025-10-10 19:07:31] -rw------- 1 mark mark      4831 Oct 10 19:07 pilotlog.txt
[2025-10-10 19:07:31] -rw------- 1 mark mark    501440 Oct 10 19:07 log.46676269._034348.job.log.1
[2025-10-10 19:07:31] -rw------- 1 mark mark       357 Oct 10 19:07 output.list
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark       620 Oct 10 19:07 runtime_log
[2025-10-10 19:07:31] -rw------- 1 mark mark    890880 Oct 10 19:07 result.tar.gz
[2025-10-10 19:07:31] -rw------- 1 mark mark       644 Oct 10 19:07 Y1tLDmEPMR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmbhcNDmD470Mo.diag
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark      8759 Oct 10 19:07 runtime_log.err
[2025-10-10 19:07:31] -rw-rw-r-- 1 mark mark     22587 Oct 10 19:07 stderr.txt
[2025-10-10 19:07:31] HITS file was successfully produced:
[2025-10-10 19:07:31] -rw------- 1 mark mark 193669355 Oct 10 19:05 shared/HITS.pool.root.1
[2025-10-10 19:07:31]  *** Contents of shared directory: ***
[2025-10-10 19:07:31] total 408764
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark 223409073 Oct 10 18:10 ATLAS.root_0
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark     15120 Oct 10 18:10 start_atlas.sh
[2025-10-10 19:07:31] -rw-r--r-- 2 mark mark    569684 Oct 10 18:10 input.tar.gz
[2025-10-10 19:07:31] -rw------- 1 mark mark 193669355 Oct 10 19:05 HITS.pool.root.1
[2025-10-10 19:07:31] -rw------- 1 mark mark    890880 Oct 10 19:07 result.tar.gz
19:07:33 (333981): run_atlas exited; CPU time 33747.875658
19:07:33 (333981): called boinc_finish(0)

</stderr_txt>
]]>

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