Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:46 (1755363): wrapper (7.7.26015): starting
04:36:46 (1755363): wrapper: running run_atlas (--nthreads 2)
[2025-10-11 04:36:46] Arguments: --nthreads 2
[2025-10-11 04:36:46] Threads: 2
[2025-10-11 04:36:46] Checking for CVMFS
[2025-10-11 04:36:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-11 04:36:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-11 04:36:46] Running cvmfs_config stat atlas.cern.ch
[2025-10-11 04:36:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-11 04:36:46] 2.9.2.0 1267943 2122 57992 151569 2 56 31186873 36864001 0 130560 0 1288172 99.988 74411 1069 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-10-11 04:36:46] CVMFS is ok
[2025-10-11 04:36:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-11 04:36:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-11 04:36:46] Further information can be found at the LHC@home message board.
[2025-10-11 04:36:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-11 04:36:46] Checking for apptainer binary...
[2025-10-11 04:36:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-11 04:36:46] Running /usr/bin/apptainer --version
[2025-10-11 04:36:46] apptainer version 1.4.1-1.1
[2025-10-11 04:36:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-11 04:36:46] thA334a
[2025-10-11 04:36:46] apptainer works
[2025-10-11 04:36:46] Set ATHENA_PROC_NUMBER=2
[2025-10-11 04:36:46] Set ATHENA_CORE_NUMBER=2
[2025-10-11 04:36:46] Starting ATLAS job with PandaID=6837509334
[2025-10-11 04:36:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-11 06:40:13]  *** The last 200 lines of the pilot log: ***
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | job 6837509334 has completed (purged errors)
[2025-10-11 06:40:13] 2025-10-11 04:39:44,486 | INFO     | overall cleanup function is called
[2025-10-11 06:40:13] 2025-10-11 04:39:45,492 | INFO     | --- collectZombieJob: --- 10, [1765477]
[2025-10-11 06:40:13] 2025-10-11 04:39:45,493 | INFO     | zombie collector waiting for pid 1765477
[2025-10-11 06:40:13] 2025-10-11 04:39:45,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-11 06:40:13] 2025-10-11 04:39:45,493 | INFO     | collected zombie processes
[2025-10-11 06:40:13] 2025-10-11 04:39:45,493 | INFO     | will attempt to kill all subprocesses of pid=1765477
[2025-10-11 06:40:13] 2025-10-11 04:39:45,526 | INFO     | process IDs to be killed: [1765477] (in reverse order)
[2025-10-11 06:40:13] 2025-10-11 04:39:45,547 | WARNING  | found no corresponding commands to process id(s)
[2025-10-11 06:40:13] 2025-10-11 04:39:45,548 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-11 06:40:13] 2025-10-11 04:39:45,551 | INFO     | did not find any defunct processes belonging to 1765477
[2025-10-11 06:40:13] 2025-10-11 04:39:45,554 | INFO     | did not find any defunct processes belonging to 1765477
[2025-10-11 06:40:13] 2025-10-11 04:39:45,554 | INFO     | ready for new job
[2025-10-11 06:40:13] 2025-10-11 04:39:45,554 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-11 06:40:13] 2025-10-11 04:39:45,556 | INFO     | ***************************************
[2025-10-11 06:40:13] 2025-10-11 04:39:45,556 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-11 06:40:13] 2025-10-11 04:39:45,557 | INFO     | ***************************************
[2025-10-11 06:40:13] 2025-10-11 04:39:45,557 | INFO     | 
[2025-10-11 06:40:13] 2025-10-11 04:39:45,558 | INFO     | architecture information:
[2025-10-11 06:40:13] 2025-10-11 04:39:45,558 | INFO     | executing command: cat /etc/os-release
[2025-10-11 06:40:13] 2025-10-11 04:39:45,585 | INFO     | cat /etc/os-release:
[2025-10-11 06:40:13] NAME="CentOS Linux"
[2025-10-11 06:40:13] VERSION="7 (Core)"
[2025-10-11 06:40:13] ID="centos"
[2025-10-11 06:40:13] ID_LIKE="rhel fedora"
[2025-10-11 06:40:13] VERSION_ID="7"
[2025-10-11 06:40:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-11 06:40:13] ANSI_COLOR="0;31"
[2025-10-11 06:40:13] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-11 06:40:13] HOME_URL="https://www.centos.org/"
[2025-10-11 06:40:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-11 06:40:13] 
[2025-10-11 06:40:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-11 06:40:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-11 06:40:13] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-11 06:40:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-11 06:40:13] 
[2025-10-11 06:40:13] 2025-10-11 04:39:45,586 | INFO     | ***************************************
[2025-10-11 06:40:13] 2025-10-11 04:39:46,088 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-10-11 06:40:13] 2025-10-11 04:39:46,101 | INFO     | sufficient remaining disk space (492760465408 B)
[2025-10-11 06:40:13] 2025-10-11 04:39:46,101 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-11 06:40:13] 2025-10-11 04:39:46,101 | INFO     | current server update state: UPDATING_FINAL
[2025-10-11 06:40:13] 2025-10-11 04:39:46,101 | INFO     | update_server=False
[2025-10-11 06:40:13] 2025-10-11 04:39:46,101 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-11 06:40:13] 2025-10-11 04:39:46,102 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-10-11 06:40:13] 2025-10-11 04:39:46,102 | INFO     | found 0 job(s) in 20 queues
[2025-10-11 06:40:13] 2025-10-11 04:39:46,102 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-11 06:40:13] 2025-10-11 04:39:46,102 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-11 06:40:13] 2025-10-11 04:39:46,202 | INFO     | all data control threads have been joined
[2025-10-11 06:40:13] 2025-10-11 04:39:46,476 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-11 06:40:13] 2025-10-11 04:39:46,476 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-11 06:40:13] 2025-10-11 04:39:46,476 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:40:13] 2025-10-11 04:39:46,476 | INFO     | will abort loop
[2025-10-11 06:40:13] 2025-10-11 04:39:46,803 | INFO     | all job control threads have been joined
[2025-10-11 06:40:13] 2025-10-11 04:39:47,107 | INFO     | [job] retrieve thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,182 | INFO     | all payload control threads have been joined
[2025-10-11 06:40:13] 2025-10-11 04:39:47,208 | INFO     | [data] control thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,248 | INFO     | [payload] validate_post thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,429 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-11 06:40:13] 2025-10-11 04:39:47,479 | INFO     | [payload] failed_post thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,481 | INFO     | [job] job monitor thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,683 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-11 06:40:13] 2025-10-11 04:39:47,808 | INFO     | [job] control thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:47,853 | INFO     | [data] copytool_in thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:48,118 | INFO     | [payload] execute_payloads thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:48,188 | INFO     | [payload] control thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:48,391 | INFO     | [job] validate thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:48,432 | INFO     | [job] create_data_payload thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:48,453 | INFO     | [payload] validate_pre thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:49,100 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-11 06:40:13] 2025-10-11 04:39:49,432 | INFO     | [data] copytool_out thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:50,106 | INFO     | [job] queue monitor thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:51,690 | INFO     | [data] queue_monitor thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:39:56,530 | INFO     | job.realtimelogging is not enabled
[2025-10-11 06:40:13] 2025-10-11 04:39:57,536 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-11 06:40:13] 2025-10-11 04:40:07,694 | INFO     | [monitor] cgroup control has ended
[2025-10-11 06:40:13] 2025-10-11 04:40:08,651 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140126927566656)>', '<ExcThread(monitor, started 140126411790080)>']
[2025-10-11 06:40:13] 2025-10-11 04:40:09,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-11 06:40:13] 2025-10-11 04:40:09,226 | INFO     | [monitor] control thread has ended
[2025-10-11 06:40:13] 2025-10-11 04:40:13,677 | INFO     | all workflow threads have been joined
[2025-10-11 06:40:13] 2025-10-11 04:40:13,677 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-11 06:40:13] 2025-10-11 04:40:13,678 | INFO     | traces error code: 0
[2025-10-11 06:40:13] 2025-10-11 04:40:13,678 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-11 06:40:13] 2025-10-11 04:40:13,720 [wrapper] ==== pilot stdout END ====
[2025-10-11 06:40:13] 2025-10-11 04:40:13,722 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-11 06:40:13] 2025-10-11 04:40:13,725 [wrapper] pilotpid: 1759066
[2025-10-11 06:40:13] 2025-10-11 04:40:13,727 [wrapper] Pilot exit status: 0
[2025-10-11 06:40:13] 2025-10-11 04:40:13,733 [wrapper] pandaids: 6837509334
[2025-10-11 06:40:13] 2025-10-11 04:40:13,745 [wrapper] cleanup supervisor_pilot 1780670 1759067
[2025-10-11 06:40:13] 2025-10-11 04:40:13,747 [wrapper] Test setup, not cleaning
[2025-10-11 06:40:13] 2025-10-11 04:40:13,749 [wrapper] apfmon messages muted
[2025-10-11 06:40:13] 2025-10-11 04:40:13,751 [wrapper] ==== wrapper stdout END ====
[2025-10-11 06:40:13] 2025-10-11 04:40:13,753 [wrapper] ==== wrapper stderr END ====
[2025-10-11 06:40:13]  *** Error codes and diagnostics ***
[2025-10-11 06:40:13]     "exeErrorCode": 0,
[2025-10-11 06:40:13]     "exeErrorDiag": "",
[2025-10-11 06:40:13]     "pilotErrorCode": 0,
[2025-10-11 06:40:13]     "pilotErrorDiag": "",
[2025-10-11 06:40:13]  *** Listing of results directory ***
[2025-10-11 06:40:13] total 411504
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc    557409 Oct 10 09:12 pilot3.tar.gz
[2025-10-11 06:40:13] -rwx------ 1 boinc boinc     36292 Oct 10 09:38 runpilot2-wrapper.sh
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc      5112 Oct 10 09:38 queuedata.json
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc       100 Oct 11 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-11 06:40:13] -rwxr-xr-x 1 boinc boinc      7986 Oct 11 04:36 run_atlas
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc       105 Oct 11 04:36 job.xml
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc 222310452 Oct 11 04:36 EVNT.46676267._001408.pool.root.1
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc    569678 Oct 11 04:36 input.tar.gz
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:36 start_atlas.sh
[2025-10-11 06:40:13] drwxrwx--x 2 boinc boinc      4096 Oct 11 04:36 shared
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:36 boinc_setup_complete
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc      6207 Oct 11 04:36 init_data.xml
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc         0 Oct 11 04:36 boinc_lockfile
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc      2549 Oct 11 04:36 pandaJob.out
[2025-10-11 06:40:13] -rw------- 1 boinc boinc    975509 Oct 11 04:36 agis_schedconf.cvmfs.json
[2025-10-11 06:40:13] -rw------- 1 boinc boinc   1560580 Oct 11 04:36 agis_ddmendpoints.agis.ALL.json
[2025-10-11 06:40:13] drwx------ 5 boinc boinc      4096 Oct 11 04:36 pilot3
[2025-10-11 06:40:13] -rw------- 1 boinc boinc 192524195 Oct 11 06:39 HITS.46676269._034607.pool.root.1
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc       529 Oct 11 06:39 boinc_task_state.xml
[2025-10-11 06:40:13] -rw------- 1 boinc boinc        95 Oct 11 06:39 pilot_heartbeat.json
[2025-10-11 06:40:13] -rw------- 1 boinc boinc      1015 Oct 11 06:39 memory_monitor_summary.json
[2025-10-11 06:40:13] -rw------- 1 boinc boinc    262247 Oct 11 06:39 log.46676269._034607.job.log.tgz.1
[2025-10-11 06:40:13] -rw------- 1 boinc boinc      7754 Oct 11 06:39 heartbeat.json
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc      8192 Oct 11 06:40 boinc_mmap_file
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc        27 Oct 11 06:40 wrapper_checkpoint.txt
[2025-10-11 06:40:13] -rw------- 1 boinc boinc      4814 Oct 11 06:40 pilotlog.txt
[2025-10-11 06:40:13] -rw------- 1 boinc boinc   1063742 Oct 11 06:40 log.46676269._034607.job.log.1
[2025-10-11 06:40:13] -rw------- 1 boinc boinc       357 Oct 11 06:40 output.list
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc       620 Oct 11 06:40 runtime_log
[2025-10-11 06:40:13] -rw------- 1 boinc boinc   1341440 Oct 11 06:40 result.tar.gz
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc      8782 Oct 11 06:40 runtime_log.err
[2025-10-11 06:40:13] -rw------- 1 boinc boinc       660 Oct 11 06:40 5EQODmasMR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmzjcNDmjGQLkm.diag
[2025-10-11 06:40:13] -rw-r--r-- 1 boinc boinc     11971 Oct 11 06:40 stderr.txt
[2025-10-11 06:40:13] HITS file was successfully produced:
[2025-10-11 06:40:13] -rw------- 1 boinc boinc 192524195 Oct 11 06:39 shared/HITS.pool.root.1
[2025-10-11 06:40:13]  *** Contents of shared directory: ***
[2025-10-11 06:40:13] total 407012
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc 222310452 Oct 11 04:36 ATLAS.root_0
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc    569678 Oct 11 04:36 input.tar.gz
[2025-10-11 06:40:13] -rw-r--r-- 2 boinc boinc     15120 Oct 11 04:36 start_atlas.sh
[2025-10-11 06:40:13] -rw------- 1 boinc boinc 192524195 Oct 11 06:39 HITS.pool.root.1
[2025-10-11 06:40:13] -rw------- 1 boinc boinc   1341440 Oct 11 06:40 result.tar.gz
06:40:15 (1755363): run_atlas exited; CPU time 14321.097853
06:40:15 (1755363): called boinc_finish(0)

</stderr_txt>
]]>

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