Stderr output

<core_client_version>7.20.5</core_client_version>
<![CDATA[
<stderr_txt>
14:08:19 (829696): wrapper (7.7.26015): starting
14:08:19 (829696): wrapper: running run_atlas (--nthreads 12)
[2025-10-13 14:08:19] Arguments: --nthreads 12
[2025-10-13 14:08:19] Threads: 12
[2025-10-13 14:08:19] Checking for CVMFS
[2025-10-13 14:08:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-13 14:08:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-13 14:08:19] Running cvmfs_config stat atlas.cern.ch
[2025-10-13 14:08:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-13 14:08:20] 2.13.2.0 3226 365 58500 151658 0 188 2616031 4096000 3650 130560 0 2497386 99.998 13646 329 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch DIRECT 1
[2025-10-13 14:08:20] CVMFS is ok
[2025-10-13 14:08:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-13 14:08:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-13 14:08:20] Small home clusters do not require a local http proxy but it is suggested if
[2025-10-13 14:08:20] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-10-13 14:08:20] Further information can be found at the LHC@home message board.
[2025-10-13 14:08:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-13 14:08:20] Checking for apptainer binary...
[2025-10-13 14:08:20] apptainer is not installed, using version from CVMFS
[2025-10-13 14:08:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-13 14:08:20] ng-jupiter
[2025-10-13 14:08:20] apptainer works
[2025-10-13 14:08:20] Set ATHENA_PROC_NUMBER=12
[2025-10-13 14:08:20] Set ATHENA_CORE_NUMBER=12
[2025-10-13 14:08:20] Starting ATLAS job with PandaID=6837509912
[2025-10-13 14:08:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-13 15:17:44]  *** The last 200 lines of the pilot log: ***
[2025-10-13 15:17:44]  surl=/var/lib/boinc-client/slots/3/PanDA_Pilot-6837509912/log.46676269._034797.job.log.tgz.1
[2025-10-13 15:17:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/30/log.46676269._034797.job.log.tgz.1
[2025-10-13 15:17:44]  workdir=None
[2025-10-13 15:17:44] ]
[2025-10-13 15:17:44] 2025-10-13 12:16:47,082 | INFO     | monitor loop #307: job 0:6837509912 is in state 'stageout'
[2025-10-13 15:17:44] 2025-10-13 12:16:47,087 | WARNING  | aborting job monitor tasks since payload process 840765 is not running
[2025-10-13 15:17:44] 2025-10-13 12:16:47,090 | INFO     | transferring file log.46676269._034797.job.log.tgz.1 from /var/lib/boinc-client/slots/3/PanDA_Pilot-6837509912/log.46676269._034797.job.log.tgz.1 to /var/lib/boinc
[2025-10-13 15:17:44] 2025-10-13 12:16:47,090 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/3/PanDA_Pilot-6837509912/log.46676269._034797.job.log.tgz.1 /var/lib/boinc-client/slots/3/log.466762
[2025-10-13 15:17:44] 2025-10-13 12:16:47,106 | INFO     | adding to output.list: log.46676269._034797.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/8d/30/log.46676269._034797.job.log.tg
[2025-10-13 15:17:44] 2025-10-13 12:16:47,107 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-13 15:17:44] 2025-10-13 12:16:47,107 | INFO     | summary of transferred files:
[2025-10-13 15:17:44] 2025-10-13 12:16:47,107 | INFO     |  -- lfn=log.46676269._034797.job.log.tgz.1, status_code=0, status=transferred
[2025-10-13 15:17:44] 2025-10-13 12:16:47,107 | INFO     | stage-out finished correctly
[2025-10-13 15:17:44] 2025-10-13 12:16:48,907 | INFO     | time since job start (4095s) is within the limit (172800.0s)
[2025-10-13 15:17:44] 2025-10-13 12:16:49,075 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-13 15:17:44] 2025-10-13 12:16:49,169 | INFO     | job 6837509912 has state=finished
[2025-10-13 15:17:44] 2025-10-13 12:16:49,170 | INFO     | preparing for final server update for job 6837509912 in state='finished'
[2025-10-13 15:17:44] 2025-10-13 12:16:49,598 | INFO     | monitor loop #308: job 0:6837509912 is in state 'finished'
[2025-10-13 15:17:44] 2025-10-13 12:16:49,598 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:17:44] 2025-10-13 12:16:50,046 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-10-13 15:17:44] 2025-10-13 12:16:50,046 | INFO     | this job has now completed (state=finished)
[2025-10-13 15:17:44] 2025-10-13 12:16:50,047 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-13 15:17:44] 2025-10-13 12:16:50,047 | INFO     | log transfer has been attempted: DONE
[2025-10-13 15:17:44] 2025-10-13 12:16:50,047 | INFO     | job 6837509912 has finished - writing final server update
[2025-10-13 15:17:44] 2025-10-13 12:16:50,048 | INFO     | total number of processed events: 400 (read)
[2025-10-13 15:17:44] 2025-10-13 12:16:50,050 | INFO     | executing command: lscpu
[2025-10-13 15:17:44] 2025-10-13 12:16:50,112 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-13 15:17:44] 2025-10-13 12:16:50,913 | INFO     | time since job start (4097s) is within the limit (172800.0s)
[2025-10-13 15:17:44] 2025-10-13 12:16:52,102 | INFO     | monitor loop #309: job 0:6837509912 is in state 'finished'
[2025-10-13 15:17:44] 2025-10-13 12:16:52,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:17:44] 2025-10-13 12:16:52,919 | INFO     | time since job start (4099s) is within the limit (172800.0s)
[2025-10-13 15:17:44] 2025-10-13 12:16:54,192 | INFO     | PID=833688 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 15:17:44] 2025-10-13 12:16:54,192 | INFO     | .. there are 2 such processes running
[2025-10-13 15:17:44] 2025-10-13 12:16:54,605 | INFO     | monitor loop #310: job 0:6837509912 is in state 'finished'
[2025-10-13 15:17:44] 2025-10-13 12:16:54,605 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-13 15:17:44] 2025-10-13 12:16:55,192 | INFO     | time since job start (4102s) is within the limit (172800.0s)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,156 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-13 15:17:44] 2025-10-13 12:16:56,170 | INFO     | found 36 cores (18 cores per socket, 2 sockets) HT, CPU MHz: 1668.2434722222222
[2025-10-13 15:17:44] 2025-10-13 12:16:56,185 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6837509912/memory_monitor_summary.json (trf name=prmon)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,186 | INFO     | extracted standard info from prmon json
[2025-10-13 15:17:44] 2025-10-13 12:16:56,186 | INFO     | extracted standard memory fields from prmon json
[2025-10-13 15:17:44] 2025-10-13 12:16:56,187 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-13 15:17:44] 2025-10-13 12:16:56,187 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-13 15:17:44] 2025-10-13 12:16:56,187 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-13 15:17:44] 2025-10-13 12:16:56,189 | INFO     | fitting pss+swap vs Time
[2025-10-13 15:17:44] 2025-10-13 12:16:56,190 | INFO     | sum of square deviations: 66959395.0
[2025-10-13 15:17:44] 2025-10-13 12:16:56,190 | INFO     | sum of deviations: 817982427.9999999
[2025-10-13 15:17:44] 2025-10-13 12:16:56,190 | INFO     | mean x: 1760355846.5
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | mean y: 2357080.6333333333
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | -- intersect: -21502319738.266613
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | intersect: -21502319738.266613
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | chi2: 0.03801732470022299
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | -- intersect: -21502319738.266613
[2025-10-13 15:17:44] 2025-10-13 12:16:56,191 | INFO     | current memory leak: 12.22 B/s (using 60 data points, chi2=0.04)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,192 | INFO     | could have reported an average CPU frequency of 2123 MHz (6 samples)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,192 | INFO     | ..............................
[2025-10-13 15:17:44] 2025-10-13 12:16:56,192 | INFO     | . Timing measurements:
[2025-10-13 15:17:44] 2025-10-13 12:16:56,192 | INFO     | . get job = 0 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,192 | INFO     | . initial setup = 2 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | . payload setup = 7 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | . stage-in = 0 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | . payload execution = 4065 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | . stage-out = 0 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | . log creation = 0 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,193 | INFO     | ..............................
[2025-10-13 15:17:44] 2025-10-13 12:16:56,284 | INFO     | 
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | job summary report
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | --------------------------------------------------
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | PanDA job id: 6837509912
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | task id: 46676269
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | errors: (none)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-13 15:17:44] 2025-10-13 12:16:56,285 | INFO     | pilot state: finished 
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | transexitcode: 0
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | exeerrorcode: 0
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | exeerrordiag: 
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | exitcode: 0
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | exitmsg: OK
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | cpuconsumptiontime: 43758 s
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | nevents: 400
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | neventsw: 0
[2025-10-13 15:17:44] 2025-10-13 12:16:56,286 | INFO     | pid: 840765
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | pgrp: 840765
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | corecount: 12
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | event service: False
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | sizes: {0: 2348864, 6: 2349126, 11: 2349154, 4076: 2375089, 4077: 2384101, 4079: 2384157, 4087: 2384479}
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | --------------------------------------------------
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | 
[2025-10-13 15:17:44] 2025-10-13 12:16:56,287 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-10-13 15:17:44] 2025-10-13 12:16:56,308 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,309 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,310 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,311 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,311 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-13 15:17:44] 2025-10-13 12:16:56,311 | INFO     | job 6837509912 has completed (purged errors)
[2025-10-13 15:17:44] 2025-10-13 12:16:56,311 | INFO     | overall cleanup function is called
[2025-10-13 15:17:44] 2025-10-13 12:16:57,320 | INFO     | --- collectZombieJob: --- 10, [840765]
[2025-10-13 15:17:44] 2025-10-13 12:16:57,320 | INFO     | zombie collector waiting for pid 840765
[2025-10-13 15:17:44] 2025-10-13 12:16:57,321 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-13 15:17:44] 2025-10-13 12:16:57,321 | INFO     | collected zombie processes
[2025-10-13 15:17:44] 2025-10-13 12:16:57,321 | INFO     | will attempt to kill all subprocesses of pid=840765
[2025-10-13 15:17:44] 2025-10-13 12:16:57,518 | INFO     | process IDs to be killed: [840765] (in reverse order)
[2025-10-13 15:17:44] 2025-10-13 12:16:57,570 | WARNING  | found no corresponding commands to process id(s)
[2025-10-13 15:17:44] 2025-10-13 12:16:57,571 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-13 15:17:44] 2025-10-13 12:16:57,576 | INFO     | did not find any defunct processes belonging to 840765
[2025-10-13 15:17:44] 2025-10-13 12:16:57,582 | INFO     | did not find any defunct processes belonging to 840765
[2025-10-13 15:17:44] 2025-10-13 12:16:57,582 | INFO     | ready for new job
[2025-10-13 15:17:44] 2025-10-13 12:16:57,582 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-13 15:17:44] 2025-10-13 12:16:57,584 | INFO     | ***************************************
[2025-10-13 15:17:44] 2025-10-13 12:16:57,584 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-13 15:17:44] 2025-10-13 12:16:57,584 | INFO     | ***************************************
[2025-10-13 15:17:44] 2025-10-13 12:16:57,584 | INFO     | 
[2025-10-13 15:17:44] 2025-10-13 12:16:57,588 | INFO     | architecture information:
[2025-10-13 15:17:44] 2025-10-13 12:16:57,589 | INFO     | executing command: cat /etc/os-release
[2025-10-13 15:17:44] 2025-10-13 12:16:57,605 | INFO     | cat /etc/os-release:
[2025-10-13 15:17:44] NAME="CentOS Linux"
[2025-10-13 15:17:44] VERSION="7 (Core)"
[2025-10-13 15:17:44] ID="centos"
[2025-10-13 15:17:44] ID_LIKE="rhel fedora"
[2025-10-13 15:17:44] VERSION_ID="7"
[2025-10-13 15:17:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-13 15:17:44] ANSI_COLOR="0;31"
[2025-10-13 15:17:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-13 15:17:44] HOME_URL="https://www.centos.org/"
[2025-10-13 15:17:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-13 15:17:44] 
[2025-10-13 15:17:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-13 15:17:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-13 15:17:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-13 15:17:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-13 15:17:44] 
[2025-10-13 15:17:44] 2025-10-13 12:16:57,606 | INFO     | ***************************************
[2025-10-13 15:17:44] 2025-10-13 12:16:58,109 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-10-13 15:17:44] 2025-10-13 12:16:58,125 | INFO     | sufficient remaining disk space (2949744951296 B)
[2025-10-13 15:17:44] 2025-10-13 12:16:58,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-13 15:17:44] 2025-10-13 12:16:58,126 | INFO     | current server update state: UPDATING_FINAL
[2025-10-13 15:17:44] 2025-10-13 12:16:58,126 | INFO     | update_server=False
[2025-10-13 15:17:44] 2025-10-13 12:16:58,126 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-13 15:17:44] 2025-10-13 12:16:58,127 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:17:44] 2025-10-13 12:16:58,127 | INFO     | aborting loop
[2025-10-13 15:17:44] 2025-10-13 12:16:58,127 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-13 15:17:44] 2025-10-13 12:16:58,127 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-13 15:17:44] 2025-10-13 12:16:58,139 | INFO     | all data control threads have been joined
[2025-10-13 15:17:44] 2025-10-13 12:16:58,270 | INFO     | all payload control threads have been joined
[2025-10-13 15:17:44] 2025-10-13 12:16:59,132 | INFO     | [job] retrieve thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,133 | INFO     | [job] job monitor thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,133 | INFO     | [job] queue monitor thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,144 | INFO     | [data] control thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,183 | INFO     | [payload] validate_post thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,196 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,276 | INFO     | [payload] control thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,316 | INFO     | [payload] failed_post thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,507 | INFO     | [data] copytool_in thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,548 | INFO     | [job] validate thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,679 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-13 15:17:44] 2025-10-13 12:16:59,683 | INFO     | all job control threads have been joined
[2025-10-13 15:17:44] 2025-10-13 12:16:59,785 | INFO     | [payload] execute_payloads thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,847 | INFO     | [job] create_data_payload thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:16:59,879 | INFO     | [payload] validate_pre thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:17:00,134 | INFO     | [data] copytool_out thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:17:00,689 | INFO     | [job] control thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:17:03,685 | INFO     | [data] queue_monitor thread has finished
[2025-10-13 15:17:44] 2025-10-13 12:17:28,536 | INFO     | PID=833688 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-10-13 15:17:44] 2025-10-13 12:17:28,536 | INFO     | .. there are 2 such processes running
[2025-10-13 15:17:44] 2025-10-13 12:17:28,536 | INFO     | found 0 job(s) in 20 queues
[2025-10-13 15:17:44] 2025-10-13 12:17:28,536 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-13 15:17:44] 2025-10-13 12:17:28,536 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-13 15:17:44] 2025-10-13 12:17:39,256 | INFO     | [monitor] cgroup control has ended
[2025-10-13 15:17:44] 2025-10-13 12:17:39,632 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139918934001472)>', '<ExcThread(monitor, started 139918022014720)>']
[2025-10-13 15:17:44] 2025-10-13 12:17:40,597 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-13 15:17:44] 2025-10-13 12:17:40,598 | INFO     | [monitor] control thread has ended
[2025-10-13 15:17:44] 2025-10-13 12:17:44,658 | INFO     | all workflow threads have been joined
[2025-10-13 15:17:44] 2025-10-13 12:17:44,658 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-13 15:17:44] 2025-10-13 12:17:44,658 | INFO     | traces error code: 0
[2025-10-13 15:17:44] 2025-10-13 12:17:44,659 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-13 15:17:44] 2025-10-13 12:17:44,764 [wrapper] ==== pilot stdout END ====
[2025-10-13 15:17:44] 2025-10-13 12:17:44,767 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-13 15:17:44] 2025-10-13 12:17:44,770 [wrapper] pilotpid: 833688
[2025-10-13 15:17:44] 2025-10-13 12:17:44,773 [wrapper] Pilot exit status: 0
[2025-10-13 15:17:44] 2025-10-13 12:17:44,783 [wrapper] pandaids: 6837509912
[2025-10-13 15:17:44] 2025-10-13 12:17:44,819 [wrapper] cleanup supervisor_pilot  871019 833689
[2025-10-13 15:17:44] 2025-10-13 12:17:44,821 [wrapper] Test setup, not cleaning
[2025-10-13 15:17:44] 2025-10-13 12:17:44,823 [wrapper] apfmon messages muted
[2025-10-13 15:17:44] 2025-10-13 12:17:44,826 [wrapper] ==== wrapper stdout END ====
[2025-10-13 15:17:44] 2025-10-13 12:17:44,829 [wrapper] ==== wrapper stderr END ====
[2025-10-13 15:17:44]  *** Error codes and diagnostics ***
[2025-10-13 15:17:44]     "exeErrorCode": 0,
[2025-10-13 15:17:44]     "exeErrorDiag": "",
[2025-10-13 15:17:44]     "pilotErrorCode": 0,
[2025-10-13 15:17:44]     "pilotErrorDiag": "",
[2025-10-13 15:17:44]  *** Listing of results directory ***
[2025-10-13 15:17:44] total 415340
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc    557409 Oct 10 10:47 pilot3.tar.gz
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc      5112 Oct 10 10:52 queuedata.json
[2025-10-13 15:17:44] -rwx------ 1 boinc boinc     36292 Oct 10 10:53 runpilot2-wrapper.sh
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc       100 Oct 13 14:08 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-13 15:17:44] -rwxr-xr-x 1 boinc boinc      7986 Oct 13 14:08 run_atlas
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc       105 Oct 13 14:08 job.xml
[2025-10-13 15:17:44] drwxrwx--x 2 boinc boinc      4096 Oct 13 14:08 shared
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc    569682 Oct 13 14:08 input.tar.gz
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc      6598 Oct 13 14:08 init_data.xml
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc 221556871 Oct 13 14:08 EVNT.46676267._001415.pool.root.1
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:08 start_atlas.sh
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc         0 Oct 13 14:08 boinc_lockfile
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc      2550 Oct 13 14:08 pandaJob.out
[2025-10-13 15:17:44] -rw------- 1 boinc boinc    972497 Oct 13 14:08 agis_schedconf.cvmfs.json
[2025-10-13 15:17:44] -rw------- 1 boinc boinc   1560580 Oct 13 14:08 agis_ddmendpoints.agis.ALL.json
[2025-10-13 15:17:44] drwx------ 5 boinc boinc      4096 Oct 13 14:08 pilot3
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc       529 Oct 13 15:16 boinc_task_state.xml
[2025-10-13 15:17:44] -rw------- 1 boinc boinc 197841500 Oct 13 15:16 HITS.46676269._034797.pool.root.1
[2025-10-13 15:17:44] -rw------- 1 boinc boinc      1025 Oct 13 15:16 memory_monitor_summary.json
[2025-10-13 15:17:44] -rw------- 1 boinc boinc        95 Oct 13 15:16 pilot_heartbeat.json
[2025-10-13 15:17:44] -rw------- 1 boinc boinc    383535 Oct 13 15:16 log.46676269._034797.job.log.tgz.1
[2025-10-13 15:17:44] -rw------- 1 boinc boinc      7778 Oct 13 15:16 heartbeat.json
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc      8192 Oct 13 15:17 boinc_mmap_file
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc        27 Oct 13 15:17 wrapper_checkpoint.txt
[2025-10-13 15:17:44] -rw------- 1 boinc boinc      4831 Oct 13 15:17 pilotlog.txt
[2025-10-13 15:17:44] -rw------- 1 boinc boinc    617048 Oct 13 15:17 log.46676269._034797.job.log.1
[2025-10-13 15:17:44] -rw------- 1 boinc boinc       357 Oct 13 15:17 output.list
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc       620 Oct 13 15:17 runtime_log
[2025-10-13 15:17:44] -rw------- 1 boinc boinc   1024000 Oct 13 15:17 result.tar.gz
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc      9015 Oct 13 15:17 runtime_log.err
[2025-10-13 15:17:44] -rw------- 1 boinc boinc       729 Oct 13 15:17 nyULDmb7MR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmelcNDm7sQDNo.diag
[2025-10-13 15:17:44] -rw-r--r-- 1 boinc boinc     22567 Oct 13 15:17 stderr.txt
[2025-10-13 15:17:44] HITS file was successfully produced:
[2025-10-13 15:17:44] -rw------- 1 boinc boinc 197841500 Oct 13 15:16 shared/HITS.pool.root.1
[2025-10-13 15:17:44]  *** Contents of shared directory: ***
[2025-10-13 15:17:44] total 411160
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc    569682 Oct 13 14:08 input.tar.gz
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc 221556871 Oct 13 14:08 ATLAS.root_0
[2025-10-13 15:17:44] -rw-r--r-- 2 boinc boinc     15120 Oct 13 14:08 start_atlas.sh
[2025-10-13 15:17:44] -rw------- 1 boinc boinc 197841500 Oct 13 15:16 HITS.pool.root.1
[2025-10-13 15:17:44] -rw------- 1 boinc boinc   1024000 Oct 13 15:17 result.tar.gz
15:17:46 (829696): run_atlas exited; CPU time 43882.776640
15:17:46 (829696): called boinc_finish(0)

</stderr_txt>
]]>

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