Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:12:29 (43385): wrapper (7.7.26015): starting
13:12:29 (43385): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 13:12:29] Arguments: --nthreads 12
[2025-10-10 13:12:29] Threads: 12
[2025-10-10 13:12:29] Checking for CVMFS
[2025-10-10 13:12:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 13:12:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 13:12:29] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 13:12:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 13:12:29] 2.13.2.0 135553 1597 101704 151555 3 196 23760480 32503808 7126 16776704 0 27940611 99.975 2062283 53631 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-10-10 13:12:29] CVMFS is ok
[2025-10-10 13:12:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-10-10 13:12:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-10-10 13:12:29] Further information can be found at the LHC@home message board.
[2025-10-10 13:12:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 13:12:29] Checking for apptainer binary...
[2025-10-10 13:12:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-10-10 13:12:29] Running /usr/bin/apptainer --version
[2025-10-10 13:12:29] apptainer version 1.4.3-1.el9
[2025-10-10 13:12:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 13:12:29] c8-7-2.aglt2.org
[2025-10-10 13:12:29] apptainer works
[2025-10-10 13:12:30] Set ATHENA_PROC_NUMBER=12
[2025-10-10 13:12:30] Set ATHENA_CORE_NUMBER=12
[2025-10-10 13:12:30] Starting ATLAS job with PandaID=6837509805
[2025-10-10 13:12:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 13:41:08]  *** The last 200 lines of the pilot log: ***
[2025-10-10 13:41:08]  status=None
[2025-10-10 13:41:08]  status_code=0
[2025-10-10 13:41:08]  storage_token=
[2025-10-10 13:41:08]  surl=/tmp/boinchome/slots/5/PanDA_Pilot-6837509805/log.46676269._034690.job.log.tgz.1
[2025-10-10 13:41:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/bb/log.46676269._034690.job.log.tgz.1
[2025-10-10 13:41:08]  workdir=None
[2025-10-10 13:41:08] ]
[2025-10-10 13:41:08] 2025-10-10 17:40:29,724 | INFO     | transferring file log.46676269._034690.job.log.tgz.1 from /tmp/boinchome/slots/5/PanDA_Pilot-6837509805/log.46676269._034690.job.log.tgz.1 to /tmp/boinchome/slots/
[2025-10-10 13:41:08] 2025-10-10 17:40:29,724 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/5/PanDA_Pilot-6837509805/log.46676269._034690.job.log.tgz.1 /tmp/boinchome/slots/5/log.46676269._034690.job
[2025-10-10 13:41:08] 2025-10-10 17:40:29,739 | INFO     | adding to output.list: log.46676269._034690.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/25/bb/log.46676269._034690.job.log.tg
[2025-10-10 13:41:08] 2025-10-10 17:40:29,740 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 13:41:08] 2025-10-10 17:40:29,740 | INFO     | summary of transferred files:
[2025-10-10 13:41:08] 2025-10-10 17:40:29,740 | INFO     |  -- lfn=log.46676269._034690.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 13:41:08] 2025-10-10 17:40:29,740 | INFO     | stage-out finished correctly
[2025-10-10 13:41:08] 2025-10-10 17:40:30,235 | INFO     | time since job start (1671s) is within the limit (172800.0s)
[2025-10-10 13:41:08] 2025-10-10 17:40:31,267 | WARNING  | process 63910 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 13:41:08] 2025-10-10 17:40:31,268 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837509805/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 13:41:08] 2025-10-10 17:40:31,585 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 13:41:08] 2025-10-10 17:40:31,641 | INFO     | job 6837509805 has state=finished
[2025-10-10 13:41:08] 2025-10-10 17:40:31,641 | INFO     | preparing for final server update for job 6837509805 in state='finished'
[2025-10-10 13:41:08] 2025-10-10 17:40:31,642 | INFO     | this job has now completed (state=finished)
[2025-10-10 13:41:08] 2025-10-10 17:40:31,642 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 13:41:08] 2025-10-10 17:40:31,642 | INFO     | log transfer has been attempted: DONE
[2025-10-10 13:41:08] 2025-10-10 17:40:31,643 | INFO     | job 6837509805 has finished - writing final server update
[2025-10-10 13:41:08] 2025-10-10 17:40:31,643 | INFO     | total number of processed events: 400 (read)
[2025-10-10 13:41:08] 2025-10-10 17:40:31,644 | INFO     | executing command: lscpu
[2025-10-10 13:41:08] 2025-10-10 17:40:31,709 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 13:41:08] 2025-10-10 17:40:31,749 | INFO     | number of running child processes to parent process 63910: 1
[2025-10-10 13:41:08] 2025-10-10 17:40:31,749 | INFO     | maximum number of monitored processes: 6
[2025-10-10 13:41:08] 2025-10-10 17:40:32,241 | INFO     | time since job start (1673s) is within the limit (172800.0s)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,247 | INFO     | time since job start (1675s) is within the limit (172800.0s)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,252 | INFO     | monitor loop #126: job 0:6837509805 is in state 'finished'
[2025-10-10 13:41:08] 2025-10-10 17:40:34,252 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,579 | INFO     | CPU arch script returned: x86-64-v4
[2025-10-10 13:41:08] 2025-10-10 17:40:34,583 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3542.3308906249945
[2025-10-10 13:41:08] 2025-10-10 17:40:34,591 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6837509805/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | INFO     | extracted standard info from prmon json
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 13:41:08] 2025-10-10 17:40:34,592 | INFO     | fitting pss+swap vs Time
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | sum of square deviations: 2474465.0
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | sum of deviations: 77236187.00000001
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | mean x: 1760117266.5
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | mean y: 2360464.1
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | -- intersect: -54936685486.16515
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | intersect: -54936685486.16515
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | chi2: 0.0005640707153789548
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | -- intersect: -54936685486.16515
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | current memory leak: 31.21 B/s (using 20 data points, chi2=0.00)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | could have reported an average CPU frequency of 3567 MHz (4 samples)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | ..............................
[2025-10-10 13:41:08] 2025-10-10 17:40:34,593 | INFO     | . Timing measurements:
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . get job = 0 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . initial setup = 2 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . payload setup = 4 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . stage-in = 0 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . payload execution = 1646 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . stage-out = 0 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | . log creation = 0 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,594 | INFO     | ..............................
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | 
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | job summary report
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | --------------------------------------------------
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | PanDA job id: 6837509805
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | task id: 46676269
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | errors: (none)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | pilot state: finished 
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | transexitcode: 0
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | exeerrorcode: 0
[2025-10-10 13:41:08] 2025-10-10 17:40:34,627 | INFO     | exeerrordiag: 
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | exitcode: 0
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | exitmsg: OK
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | cpuconsumptiontime: 17370 s
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | nevents: 400
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | neventsw: 0
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | pid: 63910
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | pgrp: 63910
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | corecount: 12
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | event service: False
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | sizes: {0: 2348857, 4: 2349119, 11: 2349147, 1654: 2374013, 1656: 2383011, 1658: 2383067, 1661: 2383389}
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | --------------------------------------------------
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | 
[2025-10-10 13:41:08] 2025-10-10 17:40:34,628 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-10-10 13:41:08] 2025-10-10 17:40:34,645 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | job 6837509805 has completed (purged errors)
[2025-10-10 13:41:08] 2025-10-10 17:40:34,646 | INFO     | overall cleanup function is called
[2025-10-10 13:41:08] 2025-10-10 17:40:35,652 | INFO     | --- collectZombieJob: --- 10, [63910]
[2025-10-10 13:41:08] 2025-10-10 17:40:35,653 | INFO     | zombie collector waiting for pid 63910
[2025-10-10 13:41:08] 2025-10-10 17:40:35,653 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 13:41:08] 2025-10-10 17:40:35,653 | INFO     | collected zombie processes
[2025-10-10 13:41:08] 2025-10-10 17:40:35,653 | INFO     | will attempt to kill all subprocesses of pid=63910
[2025-10-10 13:41:08] 2025-10-10 17:40:36,029 | INFO     | process IDs to be killed: [63910] (in reverse order)
[2025-10-10 13:41:08] 2025-10-10 17:40:36,131 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 13:41:08] 2025-10-10 17:40:36,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 13:41:08] 2025-10-10 17:40:36,146 | INFO     | did not find any defunct processes belonging to 63910
[2025-10-10 13:41:08] 2025-10-10 17:40:36,156 | INFO     | did not find any defunct processes belonging to 63910
[2025-10-10 13:41:08] 2025-10-10 17:40:36,156 | INFO     | ready for new job
[2025-10-10 13:41:08] 2025-10-10 17:40:36,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 13:41:08] 2025-10-10 17:40:36,157 | INFO     | ***************************************
[2025-10-10 13:41:08] 2025-10-10 17:40:36,157 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 13:41:08] 2025-10-10 17:40:36,157 | INFO     | ***************************************
[2025-10-10 13:41:08] 2025-10-10 17:40:36,157 | INFO     | 
[2025-10-10 13:41:08] 2025-10-10 17:40:36,172 | INFO     | architecture information:
[2025-10-10 13:41:08] 2025-10-10 17:40:36,172 | INFO     | executing command: cat /etc/os-release
[2025-10-10 13:41:08] 2025-10-10 17:40:36,181 | INFO     | cat /etc/os-release:
[2025-10-10 13:41:08] NAME="CentOS Linux"
[2025-10-10 13:41:08] VERSION="7 (Core)"
[2025-10-10 13:41:08] ID="centos"
[2025-10-10 13:41:08] ID_LIKE="rhel fedora"
[2025-10-10 13:41:08] VERSION_ID="7"
[2025-10-10 13:41:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 13:41:08] ANSI_COLOR="0;31"
[2025-10-10 13:41:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 13:41:08] HOME_URL="https://www.centos.org/"
[2025-10-10 13:41:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 13:41:08] 
[2025-10-10 13:41:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 13:41:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 13:41:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 13:41:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 13:41:08] 
[2025-10-10 13:41:08] 2025-10-10 17:40:36,181 | INFO     | ***************************************
[2025-10-10 13:41:08] 2025-10-10 17:40:36,684 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-10-10 13:41:08] 2025-10-10 17:40:36,693 | INFO     | sufficient remaining disk space (90761592832 B)
[2025-10-10 13:41:08] 2025-10-10 17:40:36,693 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 13:41:08] 2025-10-10 17:40:36,693 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 13:41:08] 2025-10-10 17:40:36,693 | INFO     | update_server=False
[2025-10-10 13:41:08] 2025-10-10 17:40:36,693 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 13:41:08] 2025-10-10 17:40:36,755 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-10-10 13:41:08] 2025-10-10 17:40:36,756 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-10-10 13:41:08] 2025-10-10 17:40:36,756 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:41:08] 2025-10-10 17:40:36,756 | INFO     | will abort loop
[2025-10-10 13:41:08] 2025-10-10 17:40:37,241 | INFO     | all data control threads have been joined
[2025-10-10 13:41:08] 2025-10-10 17:40:37,535 | INFO     | all payload control threads have been joined
[2025-10-10 13:41:08] 2025-10-10 17:40:37,647 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 13:41:08] 2025-10-10 17:40:37,698 | INFO     | [job] retrieve thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:37,761 | INFO     | [job] job monitor thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:37,802 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 13:41:08] 2025-10-10 17:40:37,877 | INFO     | [payload] failed_post thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,149 | INFO     | all job control threads have been joined
[2025-10-10 13:41:08] 2025-10-10 17:40:38,229 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,247 | INFO     | [data] control thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,541 | INFO     | [payload] control thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,564 | INFO     | [job] validate thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,599 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,744 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:38,858 | INFO     | [payload] validate_post thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:39,017 | INFO     | [data] copytool_in thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:39,151 | INFO     | [job] control thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:39,637 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 13:41:08] 2025-10-10 17:40:39,808 | INFO     | [data] copytool_out thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:40,642 | INFO     | [job] queue monitor thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:40,875 | INFO     | [monitor] cgroup control has ended
[2025-10-10 13:41:08] 2025-10-10 17:40:41,653 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:47,011 | INFO     | job.realtimelogging is not enabled
[2025-10-10 13:41:08] 2025-10-10 17:40:48,016 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 13:41:08] 2025-10-10 17:40:50,104 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140197100201792)>', '<ExcThread(monitor, started 140196741879552)>']
[2025-10-10 13:41:08] 2025-10-10 17:40:55,128 | INFO     | all workflow threads have been joined
[2025-10-10 13:41:08] 2025-10-10 17:40:55,129 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 13:41:08] 2025-10-10 17:40:55,129 | INFO     | traces error code: 0
[2025-10-10 13:41:08] 2025-10-10 17:40:55,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 13:41:08] 2025-10-10 17:41:07,835 | INFO     | PID=48411 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | INFO     | .. there are 10 such processes running
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 13:41:08] 2025-10-10 17:41:07,836 | INFO     | [monitor] control thread has ended
[2025-10-10 13:41:08] 2025-10-10 17:41:07,942 [wrapper] ==== pilot stdout END ====
[2025-10-10 13:41:08] 2025-10-10 17:41:07,944 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 13:41:08] 2025-10-10 17:41:07,947 [wrapper] pilotpid: 48411
[2025-10-10 13:41:08] 2025-10-10 17:41:07,949 [wrapper] Pilot exit status: 0
[2025-10-10 13:41:08] 2025-10-10 17:41:07,958 [wrapper] pandaids: 6837509805
[2025-10-10 13:41:08] 2025-10-10 17:41:08,053 [wrapper] cleanup supervisor_pilot  186929 48413
[2025-10-10 13:41:08] 2025-10-10 17:41:08,056 [wrapper] Test setup, not cleaning
[2025-10-10 13:41:08] 2025-10-10 17:41:08,058 [wrapper] apfmon messages muted
[2025-10-10 13:41:08] 2025-10-10 17:41:08,060 [wrapper] ==== wrapper stdout END ====
[2025-10-10 13:41:08] 2025-10-10 17:41:08,062 [wrapper] ==== wrapper stderr END ====
[2025-10-10 13:41:08]  *** Error codes and diagnostics ***
[2025-10-10 13:41:08]     "exeErrorCode": 0,
[2025-10-10 13:41:08]     "exeErrorDiag": "",
[2025-10-10 13:41:08]     "pilotErrorCode": 0,
[2025-10-10 13:41:08]     "pilotErrorDiag": "",
[2025-10-10 13:41:08]  *** Listing of results directory ***
[2025-10-10 13:41:08] total 406116
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas    557409 Oct 10 03:47 pilot3.tar.gz
[2025-10-10 13:41:08] -rwx------. 1 boincer umatlas     36292 Oct 10 03:49 runpilot2-wrapper.sh
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas      5112 Oct 10 03:49 queuedata.json
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas       100 Oct 10 13:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 13:41:08] -rwxr-xr-x. 1 boincer umatlas      7986 Oct 10 13:12 run_atlas
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas       105 Oct 10 13:12 job.xml
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas 218811995 Oct 10 13:12 EVNT.46676267._001411.pool.root.1
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:12 start_atlas.sh
[2025-10-10 13:41:08] drwxrwx--x. 2 boincer umatlas      4096 Oct 10 13:12 shared
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas    569676 Oct 10 13:12 input.tar.gz
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas         0 Oct 10 13:12 boinc_lockfile
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas      2550 Oct 10 13:12 pandaJob.out
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas    975525 Oct 10 13:12 agis_schedconf.cvmfs.json
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas   1560580 Oct 10 13:12 agis_ddmendpoints.agis.ALL.json
[2025-10-10 13:41:08] drwx------. 5 boincer umatlas      4096 Oct 10 13:12 pilot3
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas      7161 Oct 10 13:36 init_data.xml
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas 191914272 Oct 10 13:40 HITS.46676269._034690.pool.root.1
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas        95 Oct 10 13:40 pilot_heartbeat.json
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas       529 Oct 10 13:40 boinc_task_state.xml
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas      1031 Oct 10 13:40 memory_monitor_summary.json
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas    340835 Oct 10 13:40 log.46676269._034690.job.log.tgz.1
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas      7767 Oct 10 13:40 heartbeat.json
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas      8192 Oct 10 13:41 boinc_mmap_file
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas        27 Oct 10 13:41 wrapper_checkpoint.txt
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas       821 Oct 10 13:41 pilotlog.txt
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas    277937 Oct 10 13:41 log.46676269._034690.job.log.1
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas       357 Oct 10 13:41 output.list
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas       620 Oct 10 13:41 runtime_log
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas    634880 Oct 10 13:41 result.tar.gz
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas       648 Oct 10 13:41 T8OMDmg3MR8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmpkcNDmOgwRfn.diag
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas      8695 Oct 10 13:41 runtime_log.err
[2025-10-10 13:41:08] -rw-r--r--. 1 boincer umatlas     21951 Oct 10 13:41 stderr.txt
[2025-10-10 13:41:08] HITS file was successfully produced:
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas 191914272 Oct 10 13:40 shared/HITS.pool.root.1
[2025-10-10 13:41:08]  *** Contents of shared directory: ***
[2025-10-10 13:41:08] total 402308
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas 218811995 Oct 10 13:12 ATLAS.root_0
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas     15120 Oct 10 13:12 start_atlas.sh
[2025-10-10 13:41:08] -rw-r--r--. 2 boincer umatlas    569676 Oct 10 13:12 input.tar.gz
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas 191914272 Oct 10 13:40 HITS.pool.root.1
[2025-10-10 13:41:08] -rw-------. 1 boincer umatlas    634880 Oct 10 13:41 result.tar.gz
13:41:09 (43385): run_atlas exited; CPU time 17410.992550
13:41:09 (43385): called boinc_finish(0)

</stderr_txt>
]]>

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