Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
16:50:40 (3000388): wrapper (7.7.26015): starting
16:50:40 (3000388): wrapper: running run_atlas (--nthreads 12)
[2025-10-10 16:50:40] Arguments: --nthreads 12
[2025-10-10 16:50:40] Threads: 12
[2025-10-10 16:50:40] Checking for CVMFS
[2025-10-10 16:50:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-10-10 16:50:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-10-10 16:50:40] Running cvmfs_config stat atlas.cern.ch
[2025-10-10 16:50:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-10-10 16:50:41] 2.11.0.0 3299214 444 81272 151555 1 188 4914913 6144000 14715 130560 0 9082672 99.999 20149 227 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2025-10-10 16:50:41] CVMFS is ok
[2025-10-10 16:50:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-10-10 16:50:41] Checking for apptainer binary...
[2025-10-10 16:50:41] apptainer is not installed, using version from CVMFS
[2025-10-10 16:50:41] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-10-10 16:50:41] radiat0r
[2025-10-10 16:50:41] apptainer works
[2025-10-10 16:50:41] Set ATHENA_PROC_NUMBER=12
[2025-10-10 16:50:41] Set ATHENA_CORE_NUMBER=12
[2025-10-10 16:50:41] Starting ATLAS job with PandaID=6837511240
[2025-10-10 16:50:41] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/25 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-10-10 17:44:29]  *** The last 200 lines of the pilot log: ***
[2025-10-10 17:44:29]  workdir=None
[2025-10-10 17:44:29] ]
[2025-10-10 17:44:29] 2025-10-10 17:43:48,351 | INFO     | transferring file log.46676269._035203.job.log.tgz.1 from /var/lib/boinc/slots/25/PanDA_Pilot-6837511240/log.46676269._035203.job.log.tgz.1 to /var/lib/boinc/slots
[2025-10-10 17:44:29] 2025-10-10 17:43:48,352 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/25/PanDA_Pilot-6837511240/log.46676269._035203.job.log.tgz.1 /var/lib/boinc/slots/25/log.46676269._035203.j
[2025-10-10 17:44:29] 2025-10-10 17:43:48,373 | INFO     | adding to output.list: log.46676269._035203.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/52/76/log.46676269._035203.job.log.tg
[2025-10-10 17:44:29] 2025-10-10 17:43:48,373 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2025-10-10 17:44:29] 2025-10-10 17:43:48,374 | INFO     | summary of transferred files:
[2025-10-10 17:44:29] 2025-10-10 17:43:48,374 | INFO     |  -- lfn=log.46676269._035203.job.log.tgz.1, status_code=0, status=transferred
[2025-10-10 17:44:29] 2025-10-10 17:43:48,374 | INFO     | stage-out finished correctly
[2025-10-10 17:44:29] 2025-10-10 17:43:48,440 | INFO     | PID=3005080 has CPU usage=19.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-10-10 17:44:29] 2025-10-10 17:43:48,440 | INFO     | .. there are 17 such processes running
[2025-10-10 17:44:29] 2025-10-10 17:43:48,492 | WARNING  | process 3013223 can no longer be monitored (due to stat problems) - aborting
[2025-10-10 17:44:29] 2025-10-10 17:43:48,492 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6837511240/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:44:29] 2025-10-10 17:43:49,017 | INFO     | number of running child processes to parent process 3013223: 1
[2025-10-10 17:44:29] 2025-10-10 17:43:49,017 | INFO     | maximum number of monitored processes: 6
[2025-10-10 17:44:29] 2025-10-10 17:43:49,110 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-10-10 17:44:29] 2025-10-10 17:43:49,441 | INFO     | time since job start (3173s) is within the limit (172800.0s)
[2025-10-10 17:44:29] 2025-10-10 17:43:51,269 | INFO     | job 6837511240 has state=finished
[2025-10-10 17:44:29] 2025-10-10 17:43:51,269 | INFO     | preparing for final server update for job 6837511240 in state='finished'
[2025-10-10 17:44:29] 2025-10-10 17:43:51,270 | INFO     | this job has now completed (state=finished)
[2025-10-10 17:44:29] 2025-10-10 17:43:51,270 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-10-10 17:44:29] 2025-10-10 17:43:51,270 | INFO     | log transfer has been attempted: DONE
[2025-10-10 17:44:29] 2025-10-10 17:43:51,270 | INFO     | job 6837511240 has finished - writing final server update
[2025-10-10 17:44:29] 2025-10-10 17:43:51,270 | INFO     | total number of processed events: 400 (read)
[2025-10-10 17:44:29] 2025-10-10 17:43:51,272 | INFO     | executing command: lscpu
[2025-10-10 17:44:29] 2025-10-10 17:43:51,422 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-10-10 17:44:29] 2025-10-10 17:43:51,447 | INFO     | time since job start (3175s) is within the limit (172800.0s)
[2025-10-10 17:44:29] 2025-10-10 17:43:51,518 | INFO     | monitor loop #222: job 0:6837511240 is in state 'finished'
[2025-10-10 17:44:29] 2025-10-10 17:43:51,519 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:44:29] 2025-10-10 17:43:53,451 | INFO     | time since job start (3177s) is within the limit (172800.0s)
[2025-10-10 17:44:29] 2025-10-10 17:43:54,022 | INFO     | monitor loop #223: job 0:6837511240 is in state 'finished'
[2025-10-10 17:44:29] 2025-10-10 17:43:54,022 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:44:29] 2025-10-10 17:43:55,455 | INFO     | time since job start (3179s) is within the limit (172800.0s)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,525 | INFO     | monitor loop #224: job 0:6837511240 is in state 'finished'
[2025-10-10 17:44:29] 2025-10-10 17:43:56,525 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,839 | INFO     | CPU arch script returned: x86-64-v3
[2025-10-10 17:44:29] 2025-10-10 17:43:56,868 | INFO     | found 128 cores (64 cores per socket, 2 sockets) HT, CPU MHz: 2198.0396406249993
[2025-10-10 17:44:29] 2025-10-10 17:43:56,920 | INFO     | using path: /var/lib/boinc/slots/25/PanDA_Pilot-6837511240/memory_monitor_summary.json (trf name=prmon)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,921 | INFO     | extracted standard info from prmon json
[2025-10-10 17:44:29] 2025-10-10 17:43:56,921 | INFO     | extracted standard memory fields from prmon json
[2025-10-10 17:44:29] 2025-10-10 17:43:56,921 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-10-10 17:44:29] 2025-10-10 17:43:56,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-10-10 17:44:29] 2025-10-10 17:43:56,922 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | fitting pss+swap vs Time
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | sum of square deviations: 28242390.0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | sum of deviations: 608817698.0000001
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | mean x: 1760116738.0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | mean y: 2662879.5555555555
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | -- intersect: -37939955313.89158
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | intersect: -37939955313.89158
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | chi2: 0.0019424711844314593
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | -- intersect: -37939955313.89158
[2025-10-10 17:44:29] 2025-10-10 17:43:56,923 | INFO     | current memory leak: 21.56 B/s (using 45 data points, chi2=0.00)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | could have reported an average CPU frequency of 2344 MHz (5 samples)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | ..............................
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . Timing measurements:
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . get job = 0 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . initial setup = 1 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . payload setup = 8 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . stage-in = 0 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . payload execution = 3138 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . stage-out = 1 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | . log creation = 0 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,924 | INFO     | ..............................
[2025-10-10 17:44:29] 2025-10-10 17:43:56,992 | INFO     | 
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | job summary report
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | --------------------------------------------------
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | PanDA job id: 6837511240
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | task id: 46676269
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | errors: (none)
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | status: LOG_TRANSFER = DONE 
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | pilot state: finished 
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | transexitcode: 0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | exeerrorcode: 0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | exeerrordiag: 
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | exitcode: 0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,993 | INFO     | exitmsg: OK
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | cpuconsumptiontime: 33721 s
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | nevents: 400
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | neventsw: 0
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | pid: 3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | pgrp: 3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | corecount: 12
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | event service: False
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | sizes: {0: 2348687, 1: 2348886, 8: 2349148, 11: 2349176, 3151: 2374719, 3153: 2383719, 3154: 2383903, 3161: 2384129}
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | --------------------------------------------------
[2025-10-10 17:44:29] 2025-10-10 17:43:56,994 | INFO     | 
[2025-10-10 17:44:29] 2025-10-10 17:43:56,995 | INFO     | executing command: ls -lF /var/lib/boinc/slots/25
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue jobs had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue data_in had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue data_out had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue completed_jobids has 1 job(s)
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | job 6837511240 has completed (purged errors)
[2025-10-10 17:44:29] 2025-10-10 17:43:57,021 | INFO     | overall cleanup function is called
[2025-10-10 17:44:29] 2025-10-10 17:43:58,030 | INFO     | --- collectZombieJob: --- 10, [3013223]
[2025-10-10 17:44:29] 2025-10-10 17:43:58,031 | INFO     | zombie collector waiting for pid 3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:58,031 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-10-10 17:44:29] 2025-10-10 17:43:58,031 | INFO     | collected zombie processes
[2025-10-10 17:44:29] 2025-10-10 17:43:58,031 | INFO     | will attempt to kill all subprocesses of pid=3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:58,611 | INFO     | process IDs to be killed: [3013223] (in reverse order)
[2025-10-10 17:44:29] 2025-10-10 17:43:58,801 | WARNING  | found no corresponding commands to process id(s)
[2025-10-10 17:44:29] 2025-10-10 17:43:58,802 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-10-10 17:44:29] 2025-10-10 17:43:58,822 | INFO     | did not find any defunct processes belonging to 3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:58,838 | INFO     | did not find any defunct processes belonging to 3013223
[2025-10-10 17:44:29] 2025-10-10 17:43:58,838 | INFO     | ready for new job
[2025-10-10 17:44:29] 2025-10-10 17:43:58,838 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-10-10 17:44:29] 2025-10-10 17:43:58,841 | INFO     | ***************************************
[2025-10-10 17:44:29] 2025-10-10 17:43:58,841 | INFO     | ***  PanDA Pilot version 3.11.0.29  ***
[2025-10-10 17:44:29] 2025-10-10 17:43:58,841 | INFO     | ***************************************
[2025-10-10 17:44:29] 2025-10-10 17:43:58,842 | INFO     | 
[2025-10-10 17:44:29] 2025-10-10 17:43:58,875 | INFO     | architecture information:
[2025-10-10 17:44:29] 2025-10-10 17:43:58,876 | INFO     | executing command: cat /etc/os-release
[2025-10-10 17:44:29] 2025-10-10 17:43:58,894 | INFO     | cat /etc/os-release:
[2025-10-10 17:44:29] NAME="CentOS Linux"
[2025-10-10 17:44:29] VERSION="7 (Core)"
[2025-10-10 17:44:29] ID="centos"
[2025-10-10 17:44:29] ID_LIKE="rhel fedora"
[2025-10-10 17:44:29] VERSION_ID="7"
[2025-10-10 17:44:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-10-10 17:44:29] ANSI_COLOR="0;31"
[2025-10-10 17:44:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-10-10 17:44:29] HOME_URL="https://www.centos.org/"
[2025-10-10 17:44:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-10-10 17:44:29] 
[2025-10-10 17:44:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-10-10 17:44:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-10-10 17:44:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-10-10 17:44:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-10-10 17:44:29] 
[2025-10-10 17:44:29] 2025-10-10 17:43:58,895 | INFO     | ***************************************
[2025-10-10 17:44:29] 2025-10-10 17:43:59,398 | INFO     | executing command: df -mP /var/lib/boinc/slots/25
[2025-10-10 17:44:29] 2025-10-10 17:43:59,425 | INFO     | sufficient remaining disk space (1726780276736 B)
[2025-10-10 17:44:29] 2025-10-10 17:43:59,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-10-10 17:44:29] 2025-10-10 17:43:59,426 | INFO     | current server update state: UPDATING_FINAL
[2025-10-10 17:44:29] 2025-10-10 17:43:59,426 | INFO     | update_server=False
[2025-10-10 17:44:29] 2025-10-10 17:43:59,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-10-10 17:44:29] 2025-10-10 17:43:59,427 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-10-10 17:44:29] 2025-10-10 17:43:59,594 | INFO     | all job control threads have been joined
[2025-10-10 17:44:29] 2025-10-10 17:43:59,714 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-10-10 17:44:29] 2025-10-10 17:43:59,907 | INFO     | all data control threads have been joined
[2025-10-10 17:44:29] 2025-10-10 17:44:00,034 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:44:29] 2025-10-10 17:44:00,034 | INFO     | aborting loop
[2025-10-10 17:44:29] 2025-10-10 17:44:00,323 | INFO     | all payload control threads have been joined
[2025-10-10 17:44:29] 2025-10-10 17:44:00,432 | INFO     | [job] retrieve thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,531 | INFO     | [job] create_data_payload thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,600 | INFO     | [job] control thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,656 | INFO     | [data] copytool_in thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,702 | INFO     | [monitor] cgroup control has ended
[2025-10-10 17:44:29] 2025-10-10 17:44:00,786 | INFO     | [payload] validate_post thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,818 | INFO     | [payload] validate_pre thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:00,913 | INFO     | [data] control thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,040 | INFO     | [job] job monitor thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,054 | INFO     | [payload] failed_post thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,329 | INFO     | [payload] control thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,391 | INFO     | [payload] execute_payloads thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,432 | INFO     | [data] copytool_out thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:01,773 | INFO     | [job] validate thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:02,004 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-10-10 17:44:29] 2025-10-10 17:44:03,009 | INFO     | [job] queue monitor thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:03,718 | INFO     | [data] queue_monitor thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:09,877 | INFO     | job.realtimelogging is not enabled
[2025-10-10 17:44:29] 2025-10-10 17:44:10,882 | INFO     | [payload] run_realtimelog thread has finished
[2025-10-10 17:44:29] 2025-10-10 17:44:12,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562382587712)>', '<ExcThread(monitor, started 140562090927872)>']
[2025-10-10 17:44:29] 2025-10-10 17:44:17,460 | INFO     | all workflow threads have been joined
[2025-10-10 17:44:29] 2025-10-10 17:44:17,460 | INFO     | end of generic workflow (traces error code: 0)
[2025-10-10 17:44:29] 2025-10-10 17:44:17,460 | INFO     | traces error code: 0
[2025-10-10 17:44:29] 2025-10-10 17:44:17,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-10-10 17:44:29] 2025-10-10 17:44:29,291 | INFO     | PID=3005080 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-10-10 17:44:29] 2025-10-10 17:44:29,291 | INFO     | .. there are 16 such processes running
[2025-10-10 17:44:29] 2025-10-10 17:44:29,292 | INFO     | found 0 job(s) in 20 queues
[2025-10-10 17:44:29] 2025-10-10 17:44:29,292 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-10-10 17:44:29] 2025-10-10 17:44:29,292 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-10-10 17:44:29] 2025-10-10 17:44:29,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-10-10 17:44:29] 2025-10-10 17:44:29,292 | INFO     | [monitor] control thread has ended
[2025-10-10 17:44:29] 2025-10-10 17:44:29,423 [wrapper] ==== pilot stdout END ====
[2025-10-10 17:44:29] 2025-10-10 17:44:29,426 [wrapper] ==== wrapper stdout RESUME ====
[2025-10-10 17:44:29] 2025-10-10 17:44:29,428 [wrapper] pilotpid: 3005080
[2025-10-10 17:44:29] 2025-10-10 17:44:29,433 [wrapper] Pilot exit status: 0
[2025-10-10 17:44:29] 2025-10-10 17:44:29,444 [wrapper] pandaids: 6837511240
[2025-10-10 17:44:29] 2025-10-10 17:44:29,582 [wrapper] cleanup supervisor_pilot 3193405 3005081
[2025-10-10 17:44:29] 2025-10-10 17:44:29,585 [wrapper] Test setup, not cleaning
[2025-10-10 17:44:29] 2025-10-10 17:44:29,588 [wrapper] apfmon messages muted
[2025-10-10 17:44:29] 2025-10-10 17:44:29,591 [wrapper] ==== wrapper stdout END ====
[2025-10-10 17:44:29] 2025-10-10 17:44:29,592 [wrapper] ==== wrapper stderr END ====
[2025-10-10 17:44:29]  *** Error codes and diagnostics ***
[2025-10-10 17:44:29]     "exeErrorCode": 0,
[2025-10-10 17:44:29]     "exeErrorDiag": "",
[2025-10-10 17:44:29]     "pilotErrorCode": 0,
[2025-10-10 17:44:29]     "pilotErrorDiag": "",
[2025-10-10 17:44:29]  *** Listing of results directory ***
[2025-10-10 17:44:29] total 410576
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc    557409 Oct 10 08:04 pilot3.tar.gz
[2025-10-10 17:44:29] -rwx------ 1 boinc boinc     36292 Oct 10 08:15 runpilot2-wrapper.sh
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc      5112 Oct 10 08:15 queuedata.json
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc       100 Oct 10 16:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-10-10 17:44:29] -rwxr-xr-x 1 boinc boinc      7986 Oct 10 16:50 run_atlas
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc       105 Oct 10 16:50 job.xml
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc 218867623 Oct 10 16:50 EVNT.46676267._001431.pool.root.1
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:50 start_atlas.sh
[2025-10-10 17:44:29] drwxrwx--x 2 boinc boinc      4096 Oct 10 16:50 shared
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc    569680 Oct 10 16:50 input.tar.gz
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc      9396 Oct 10 16:50 init_data.xml
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:50 boinc_setup_complete
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc         0 Oct 10 16:50 boinc_lockfile
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc      2550 Oct 10 16:50 pandaJob.out
[2025-10-10 17:44:29] -rw------- 1 boinc boinc    975525 Oct 10 16:50 agis_schedconf.cvmfs.json
[2025-10-10 17:44:29] -rw------- 1 boinc boinc   1560580 Oct 10 16:50 agis_ddmendpoints.agis.ALL.json
[2025-10-10 17:44:29] drwx------ 5 boinc boinc      4096 Oct 10 16:50 pilot3
[2025-10-10 17:44:29] -rw------- 1 boinc boinc 195949879 Oct 10 17:43 HITS.46676269._035203.pool.root.1
[2025-10-10 17:44:29] -rw------- 1 boinc boinc      1028 Oct 10 17:43 memory_monitor_summary.json
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc       530 Oct 10 17:43 boinc_task_state.xml
[2025-10-10 17:44:29] -rw------- 1 boinc boinc    377674 Oct 10 17:43 log.46676269._035203.job.log.tgz.1
[2025-10-10 17:44:29] -rw------- 1 boinc boinc        95 Oct 10 17:43 pilot_heartbeat.json
[2025-10-10 17:44:29] -rw------- 1 boinc boinc      7755 Oct 10 17:43 heartbeat.json
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc        27 Oct 10 17:44 wrapper_checkpoint.txt
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc      8192 Oct 10 17:44 boinc_mmap_file
[2025-10-10 17:44:29] -rw------- 1 boinc boinc       823 Oct 10 17:44 pilotlog.txt
[2025-10-10 17:44:29] -rw------- 1 boinc boinc    471800 Oct 10 17:44 log.46676269._035203.job.log.1
[2025-10-10 17:44:29] -rw------- 1 boinc boinc       357 Oct 10 17:44 output.list
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc       620 Oct 10 17:44 runtime_log
[2025-10-10 17:44:29] -rw------- 1 boinc boinc    870400 Oct 10 17:44 result.tar.gz
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc      8672 Oct 10 17:44 runtime_log.err
[2025-10-10 17:44:29] -rw------- 1 boinc boinc       644 Oct 10 17:44 h6XLDmeSNR8n9Rq4apOajLDm4fhM0noT9bVof3QYDm7bPMDmkksTwn.diag
[2025-10-10 17:44:29] -rw-r--r-- 1 boinc boinc     22078 Oct 10 17:44 stderr.txt
[2025-10-10 17:44:29] HITS file was successfully produced:
[2025-10-10 17:44:29] -rw------- 1 boinc boinc 195949879 Oct 10 17:43 shared/HITS.pool.root.1
[2025-10-10 17:44:29]  *** Contents of shared directory: ***
[2025-10-10 17:44:29] total 406536
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc 218867623 Oct 10 16:50 ATLAS.root_0
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc     15120 Oct 10 16:50 start_atlas.sh
[2025-10-10 17:44:29] -rw-r--r-- 2 boinc boinc    569680 Oct 10 16:50 input.tar.gz
[2025-10-10 17:44:29] -rw------- 1 boinc boinc 195949879 Oct 10 17:43 HITS.pool.root.1
[2025-10-10 17:44:29] -rw------- 1 boinc boinc    870400 Oct 10 17:44 result.tar.gz
17:44:31 (3000388): run_atlas exited; CPU time 33897.711675
17:44:31 (3000388): called boinc_finish(0)

</stderr_txt>
]]>

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